FFCP PHASE1:Hg19::chr5:134734841..134734864,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9555 | |EntrezGene=9555 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4740 | |HGNC=4740 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_ENST00000508785_5end | |association_with_transcript=2bp_to_ENST00000508785_5end | ||
|cluster_id=chr5:134734841..134734864,- | |||
|coexpression_cluster_id=C4465 | |||
|description=CAGE_peak_3_at_H2AFY_5end | |description=CAGE_peak_3_at_H2AFY_5end | ||
|id=chr5:134734841..134734864,- | |id=chr5:134734841..134734864,- | ||
|ontology_enrichment_celltype=CL:0000037!4.15e-27!172;CL:0000566!4.15e-27!172;CL:0000988!1.21e-25!182;CL:0002032!7.42e-25!165;CL:0000837!7.42e-25!165;CL:0000738!7.50e-24!140;CL:0002087!2.99e-21!119;CL:0002031!7.15e-21!124;CL:0000763!1.30e-17!112;CL:0000049!1.30e-17!112;CL:0000766!2.55e-17!76;CL:0002009!3.10e-15!65;CL:0002194!1.05e-14!63;CL:0000576!1.05e-14!63;CL:0000040!1.05e-14!63;CL:0000559!1.05e-14!63;CL:0000557!1.07e-14!71;CL:0000839!1.83e-14!70;CL:0000860!1.60e-10!45;CL:0002057!2.10e-09!42;CL:0000945!2.70e-07!24;CL:0000826!2.70e-07!24;CL:0000542!4.16e-07!53;CL:0000051!4.16e-07!53 | |ontology_enrichment_celltype=CL:0000037!4.15e-27!172;CL:0000566!4.15e-27!172;CL:0000988!1.21e-25!182;CL:0002032!7.42e-25!165;CL:0000837!7.42e-25!165;CL:0000738!7.50e-24!140;CL:0002087!2.99e-21!119;CL:0002031!7.15e-21!124;CL:0000763!1.30e-17!112;CL:0000049!1.30e-17!112;CL:0000766!2.55e-17!76;CL:0002009!3.10e-15!65;CL:0002194!1.05e-14!63;CL:0000576!1.05e-14!63;CL:0000040!1.05e-14!63;CL:0000559!1.05e-14!63;CL:0000557!1.07e-14!71;CL:0000839!1.83e-14!70;CL:0000860!1.60e-10!45;CL:0002057!2.10e-09!42;CL:0000945!2.70e-07!24;CL:0000826!2.70e-07!24;CL:0000542!4.16e-07!53;CL:0000051!4.16e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000576;5.07e-08;48!CL:0000945;1.42e-07;24!CL:0000860;2.70e-07;33!CL:0002057;2.70e-07;33!CL:0000473;3.04e-07;39!CL:0000234;3.04e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.82e-26,168;CL:0000988,1.84e-25,177;CL:0002032,4.79e-24,161;CL:0000837,4.79e-24,161;CL:0000738,4.57e-23,136;CL:0002087,1.69e-20,115;CL:0002031,4.06e-20,120;CL:0000763,6.91e-17,108;CL:0000049,6.91e-17,108;CL:0000766,1.23e-16,72;CL:0002009,1.42e-14,61;CL:0002194,4.81e-14,59;CL:0000576,4.81e-14,59;CL:0000040,4.81e-14,59;CL:0000559,4.81e-14,59;CL:0000557,5.06e-14,67;CL:0000839,8.64e-14,66;CL:0000473,1.68e-10,48;CL:0000234,1.68e-10,48;CL:0000860,2.10e-09,42;CL:0002057,2.10e-09,42;CL:0000945,2.70e-07,24;CL:0000826,2.70e-07,24;CL:0000542,4.16e-07,53;CL:0000051,4.16e-07,53 | |||
|ontology_enrichment_development_v019=CL:0002057;3.25e-07;42 | |||
|ontology_enrichment_disease=DOID:162!2.72e-10!235;DOID:14566!7.01e-09!239;DOID:0050686!1.05e-08!137;DOID:2531!1.31e-08!51;DOID:0060083!1.31e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.77e-10,235;DOID:14566,7.14e-09,239;DOID:0050686,1.08e-08,137;DOID:2531,1.31e-08,51;DOID:0060083,1.31e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.15e-15!102;UBERON:0003061!3.15e-15!102;UBERON:0002371!1.40e-13!80;UBERON:0002193!1.17e-12!112;UBERON:0001474!1.23e-12!86;UBERON:0002405!3.36e-10!115;UBERON:0004765!7.18e-09!101;UBERON:0001434!7.18e-09!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.59e-14,98;UBERON:0003061,1.59e-14,98;UBERON:0002371,6.75e-13,76;UBERON:0002193,5.50e-12,108;UBERON:0001474,5.86e-12,82;UBERON:0002405,1.75e-11,93;UBERON:0004765,1.70e-08,90;UBERON:0001434,5.33e-07,100 | |||
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| ||
|short_description=p3@H2AFY | |short_description=p3@H2AFY | ||
}} | }} |
Latest revision as of 18:04, 24 September 2015
Short description: | p3@H2AFY |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_H2AFY_5end |
Coexpression cluster: | C4465_lymphoma_chronic_acute_granulocyte_merkel_carcinosarcoma_Burkitt |
Association with transcript: | 2bp_to_ENST00000508785_5end |
EntrezGene: | H2AFY |
HGNC: | 4740 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.82e-26 | 168 |
hematopoietic cell | 1.84e-25 | 177 |
hematopoietic oligopotent progenitor cell | 4.79e-24 | 161 |
hematopoietic multipotent progenitor cell | 4.79e-24 | 161 |
leukocyte | 4.57e-23 | 136 |
nongranular leukocyte | 1.69e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 4.06e-20 | 120 |
myeloid cell | 6.91e-17 | 108 |
common myeloid progenitor | 6.91e-17 | 108 |
myeloid leukocyte | 1.23e-16 | 72 |
macrophage dendritic cell progenitor | 1.42e-14 | 61 |
monopoietic cell | 4.81e-14 | 59 |
monocyte | 4.81e-14 | 59 |
monoblast | 4.81e-14 | 59 |
promonocyte | 4.81e-14 | 59 |
granulocyte monocyte progenitor cell | 5.06e-14 | 67 |
myeloid lineage restricted progenitor cell | 8.64e-14 | 66 |
defensive cell | 1.68e-10 | 48 |
phagocyte | 1.68e-10 | 48 |
classical monocyte | 2.10e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.10e-09 | 42 |
lymphocyte of B lineage | 2.70e-07 | 24 |
pro-B cell | 2.70e-07 | 24 |
lymphocyte | 4.16e-07 | 53 |
common lymphoid progenitor | 4.16e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.59e-14 | 98 |
blood island | 1.59e-14 | 98 |
bone marrow | 6.75e-13 | 76 |
hemolymphoid system | 5.50e-12 | 108 |
bone element | 5.86e-12 | 82 |
immune system | 1.75e-11 | 93 |
skeletal element | 1.70e-08 | 90 |
skeletal system | 5.33e-07 | 100 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.77e-10 | 235 |
disease of cellular proliferation | 7.14e-09 | 239 |
organ system cancer | 1.08e-08 | 137 |
hematologic cancer | 1.31e-08 | 51 |
immune system cancer | 1.31e-08 | 51 |