FFCP PHASE1:Hg19::chr12:69201923..69202028,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:69201923..69202028,+
|short_description=p1@MDM2
|description=CAGE_peak_1_at_MDM2_5end
|association_with_transcript=0bp_to_ENST00000258149,ENST00000311440,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4193 | |EntrezGene=4193 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6973 | |HGNC=6973 | ||
|TSSclassifier=strong | |||
|UniProt=E9PF57,Q96DS0,Q00987 | |UniProt=E9PF57,Q96DS0,Q00987 | ||
|association_with_transcript=0bp_to_ENST00000258149,ENST00000311440,ENST00000356290,ENST00000358483,ENST00000393412,ENST00000428863,ENST00000462284,ENST00000540827,ENST00000544648,NM_002392,uc001sui.2,uc001suk.2,uc009zqw.2,uc009zqx.2,uc009zri.2_5end | |||
|cluster_id=chr12:69201923..69202028,+ | |||
|coexpression_cluster_id=C153 | |||
|description=CAGE_peak_1_at_MDM2_5end | |||
|id=chr12:69201923..69202028,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.23e-31!140;CL:0000037!3.70e-29!172;CL:0000566!3.70e-29!172;CL:0002032!5.29e-28!165;CL:0000837!5.29e-28!165;CL:0002087!5.28e-27!119;CL:0000988!8.27e-27!182;CL:0002031!2.17e-25!124;CL:0000766!8.97e-17!76;CL:0000763!6.93e-16!112;CL:0000049!6.93e-16!112;CL:0002057!3.71e-15!42;CL:0002194!2.21e-14!63;CL:0000576!2.21e-14!63;CL:0000040!2.21e-14!63;CL:0000559!2.21e-14!63;CL:0000839!2.98e-14!70;CL:0000860!9.84e-14!45;CL:0002009!1.38e-13!65;CL:0000557!3.41e-13!71;CL:0000838!5.09e-12!52;CL:0000542!9.31e-12!53;CL:0000051!9.31e-12!53;CL:0000945!1.88e-07!24;CL:0000826!1.88e-07!24;CL:0000219!6.36e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.26e-13;33!CL:0002057;2.26e-13;33!CL:0000576;6.62e-11;48!CL:0000473;1.22e-10;39!CL:0000234;1.22e-10;39!CL:0002087;4.26e-09;104!CL:0000766;3.40e-08;69!CL:0000542;7.62e-08;53!CL:0000738;9.78e-08;136!CL:0000945;1.99e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.36e-32,136;CL:0000037,8.61e-30,168;CL:0002032,1.21e-28,161;CL:0000837,1.21e-28,161;CL:0000988,3.94e-28,177;CL:0002087,6.77e-28,115;CL:0002031,3.42e-26,120;CL:0000766,1.14e-17,72;CL:0000763,1.88e-16,108;CL:0000049,1.88e-16,108;CL:0002194,2.59e-15,59;CL:0000576,2.59e-15,59;CL:0000040,2.59e-15,59;CL:0000559,2.59e-15,59;CL:0000860,3.71e-15,42;CL:0002057,3.71e-15,42;CL:0000839,4.43e-15,66;CL:0002009,1.95e-14,61;CL:0000473,3.62e-14,48;CL:0000234,3.62e-14,48;CL:0000557,6.01e-14,67;CL:0000838,5.09e-12,52;CL:0000542,9.31e-12,53;CL:0000051,9.31e-12,53;CL:0000945,1.88e-07,24;CL:0000826,1.88e-07,24;CL:0000219,2.32e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.97e-11;42!CL:0000051;7.62e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.50e-14!102;UBERON:0003061!1.50e-14!102;UBERON:0002193!2.66e-11!112;UBERON:0001474!5.19e-11!86;UBERON:0002371!3.95e-10!80;UBERON:0004765!1.62e-07!101;UBERON:0001434!1.62e-07!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.00e-15,98;UBERON:0003061,4.00e-15,98;UBERON:0002193,1.05e-11,108;UBERON:0001474,1.59e-11,82;UBERON:0002371,1.23e-10,76;UBERON:0002405,1.01e-08,93;UBERON:0004765,6.19e-08,90;UBERON:0001434,4.34e-07,100 | |||
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| ||
|short_description=p1@MDM2 | |||
}} | }} |
Latest revision as of 03:55, 20 September 2015
Short description: | p1@MDM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MDM2_5end |
Coexpression cluster: | C153_rhabdomyosarcoma_liposarcoma_pancreatic_somatostatinoma_Reticulocytes_lymphoma_testicular |
Association with transcript: | 0bp_to_ENST00000258149, ENST00000311440, ENST00000356290, ENST00000358483, ENST00000393412, ENST00000428863, ENST00000462284, ENST00000540827, ENST00000544648, NM_002392, uc001sui.2, uc001suk.2, uc009zqw.2, uc009zqx.2, uc009zri.2_5end |
EntrezGene: | MDM2 |
HGNC: | 6973 |
UniProt: | E9PF57Q96DS0Q00987 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.36e-32 | 136 |
hematopoietic stem cell | 8.61e-30 | 168 |
hematopoietic oligopotent progenitor cell | 1.21e-28 | 161 |
hematopoietic multipotent progenitor cell | 1.21e-28 | 161 |
hematopoietic cell | 3.94e-28 | 177 |
nongranular leukocyte | 6.77e-28 | 115 |
hematopoietic lineage restricted progenitor cell | 3.42e-26 | 120 |
myeloid leukocyte | 1.14e-17 | 72 |
myeloid cell | 1.88e-16 | 108 |
common myeloid progenitor | 1.88e-16 | 108 |
monopoietic cell | 2.59e-15 | 59 |
monocyte | 2.59e-15 | 59 |
monoblast | 2.59e-15 | 59 |
promonocyte | 2.59e-15 | 59 |
classical monocyte | 3.71e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.71e-15 | 42 |
myeloid lineage restricted progenitor cell | 4.43e-15 | 66 |
macrophage dendritic cell progenitor | 1.95e-14 | 61 |
defensive cell | 3.62e-14 | 48 |
phagocyte | 3.62e-14 | 48 |
granulocyte monocyte progenitor cell | 6.01e-14 | 67 |
lymphoid lineage restricted progenitor cell | 5.09e-12 | 52 |
lymphocyte | 9.31e-12 | 53 |
common lymphoid progenitor | 9.31e-12 | 53 |
lymphocyte of B lineage | 1.88e-07 | 24 |
pro-B cell | 1.88e-07 | 24 |
motile cell | 2.32e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.00e-15 | 98 |
blood island | 4.00e-15 | 98 |
hemolymphoid system | 1.05e-11 | 108 |
bone element | 1.59e-11 | 82 |
bone marrow | 1.23e-10 | 76 |
immune system | 1.01e-08 | 93 |
skeletal element | 6.19e-08 | 90 |
skeletal system | 4.34e-07 | 100 |