FFCP PHASE1:Hg19::chr1:31907100..31907130,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:31907100..31907130,+ | |||
|coexpression_cluster_id=C3969 | |||
|description=CAGE_peak_at_chr1:31907100..31907130,+ | |description=CAGE_peak_at_chr1:31907100..31907130,+ | ||
|id=chr1:31907100..31907130,+ | |id=chr1:31907100..31907130,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.31e-12!254;CL:0002076!7.06e-12!43;CL:0000223!1.23e-11!59;CL:0000220!2.39e-11!246;CL:0002321!2.91e-11!248;CL:0002077!3.31e-09!33;CL:0002159!6.76e-07!13 | |ontology_enrichment_celltype=CL:0000066!2.31e-12!254;CL:0002076!7.06e-12!43;CL:0000223!1.23e-11!59;CL:0000220!2.39e-11!246;CL:0002321!2.91e-11!248;CL:0002077!3.31e-09!33;CL:0002159!6.76e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.16e-11;42!CL:0002159;2.25e-10;14!CL:0000244;2.43e-10;4!CL:0000731;2.43e-10;4!CL:0002368;2.62e-09;13!CL:0002231;1.05e-08;3!CL:0002567;2.53e-08;3!CL:0002621;7.05e-08;3!CL:0002077;4.00e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.21e-15,42;CL:0000223,5.03e-11,58;CL:0000244,1.74e-10,4;CL:0000731,1.74e-10,4;CL:0002159,2.13e-10,14;CL:0002368,2.32e-09,13;CL:0002231,9.68e-09,3;CL:0002621,2.72e-08,3;CL:0002567,3.15e-08,3;CL:0002077,6.84e-08,34;CL:0000066,5.69e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000223;7.65e-08;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!9.34e-19!169;UBERON:0000925!9.34e-19!169;UBERON:0006595!9.34e-19!169;UBERON:0003102!1.95e-18!95;UBERON:0001007!1.27e-13!155;UBERON:0001555!1.27e-13!155;UBERON:0007026!1.27e-13!155;UBERON:0000161!2.85e-13!35;UBERON:0000165!4.72e-10!28;UBERON:0000930!4.72e-10!28;UBERON:0001444!9.27e-10!48;UBERON:0000077!2.46e-09!130;UBERON:0000475!3.49e-09!365;UBERON:0001004!8.69e-09!72;UBERON:0004921!1.31e-08!129;UBERON:0004185!1.31e-08!129;UBERON:0000166!1.49e-08!21;UBERON:0002100!1.67e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0003729;1.67e-10;13!UBERON:0000161;1.79e-10;19!UBERON:0000166;1.79e-10;19!UBERON:0000486;3.63e-09;12!UBERON:0006947;2.66e-08;3!UBERON:0004054;2.66e-08;3!UBERON:0000365;2.91e-08;5!UBERON:0001949;7.05e-08;3!UBERON:0001828;1.74e-07;8!UBERON:0003937;3.09e-07;12!UBERON:0005399;3.09e-07;12!UBERON:0005910;7.12e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.73e-13,99;UBERON:0000161,1.03e-11,36;UBERON:0004119,2.52e-11,160;UBERON:0000925,2.52e-11,160;UBERON:0006595,2.52e-11,160;UBERON:0003729,7.32e-11,13;UBERON:0006554,8.53e-11,47;UBERON:0001008,1.75e-10,48;UBERON:0000166,5.40e-09,22;UBERON:0000365,2.24e-08,5;UBERON:0001949,2.72e-08,3;UBERON:0006947,2.72e-08,3;UBERON:0004054,2.72e-08,3;UBERON:0001004,2.98e-08,74;UBERON:0001828,9.69e-08,8;UBERON:0003937,2.94e-07,12;UBERON:0005399,2.94e-07,12;UBERON:0000033,5.67e-07,56;UBERON:0005910,5.76e-07,6;UBERON:0005157,6.32e-07,47;UBERON:0000153,7.01e-07,62;UBERON:0007811,7.01e-07,62;UBERON:0003064,7.43e-07,28 | |||
|phase1_expression=0.54503513781167,1.07050261945492,0.986680828671798,0,0.446961094427288,0,2.53299878168311,1.26343974685366,0.261185628199839,0,1.39560233594486,0,0.527533956456907,0.123766352960047,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0.229240217243854,0.0821005894499457,0.157421562627358,0,0,0,5.51652734687356,0.90361775633475,2.9580320813343,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0.236482229888585,0.344745680736619,0,0,0,0.272906150057846,0,0,0,0,0.329851300186716,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0.486634870302636,0.189069634328136,0.221729397462564,0.087834785693126,0.458426764241994,2.18577172975525,1.11235332835329,0,0,0.531831842075461,0,0,0,0.39752481473341,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0.805658634218294,0.760272105718513,0.488124115096339,0.367663080345869,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0.12663051166458,0,0,0.354668382198357,0,0,0.74000264525148,0,0.134710672069688,0,0,0,0,6.24320153660641,0.570471821544449,0,0.23486899728753,0.323745888736263,0,0.61246251376468,0.368502951935304,0.516628905878827,4.75201142912821,1.23633464639278,0,1.43723628363248,0,0.500474079487857,0.831192346452549,0.438977620880838,0.30648779579902,0.45071417671979,0,0.179389635688862,0.213557388818567,0,0,0.206105058476878,0,0.18611685633159,0,0.194874010322397,0.252433774244115,0.0920498986422993,0.323292113637624,0.355009592516614,0.302256294682921,0.169560592310488,1.73934767846967,1.90922284413584,3.15485054927904,0.121973706129595,0,0.232387885739037,1.0366105501537,0.252320850875628,0,0,0.643240938192885,1.38134921352481,0.928735856063958,0.721879481669586,0,0,0,0.441175890929576,0,0.474541238222193,0.134831308160164,0,0.38474715694639,0.738155454624648,0,0,0,0,9.82827216677626,0.590789906681404,0,0.491953754172454,0.343135620597051,8.12152112023829,0,1.50793458617446,0.648119116109707,0.651616610620649,1.03993478527958,0,0.115930404975077,0,0.144366447761074,0,0.380508304469197,0,0,0,0.234004265139238,0.148631162288728,0.93733833986777,1.34385702559088,3.82792762554443,0.626909658919938,1.16253575405585,1.53353071666084,0,0,0.414656231081544,0,0.25248486685276,0.063497894292169,1.14596527667483,3.51652341630141,3.4214489204541,0.205654985406647,0,0,0,0,0.07333828582095,0,3.57656445851882,0,0.531876233169741,0,0,0,0,0,0,0,0.65147236858747,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.434343920002738,0,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0.414415513436035,0,1.00034104211935,0,0,0.356857977594324,0,0.234282829985426,0.601892199455438,2.27407504055985,1.03473071292505,0,0,0.955719759148911,0.587403472388222,0.686286847621712,0,0,0,0.909382714338778,1.66435439510497,1.5119514666484,0.248107807818777,0,0,1.15325234330131,0.511707249066704,0.965123526861645,0,0.462629081407967,0.532685175939381,0.492762936082855,6.23105315020345,0.581051892299796,1.32945394550784,11.8298817478938,9.66850383826911,0.459257792658427,1.27463817604702,2.36023946926963,0.902399225814824,0.15403067420883,0,0,0.316654886678627,1.13733384070897,0.170093705276516,0,0,0,1.00337954770971,0,0,0,0,0,0,0,0,1.13345112812495,0,0.165018999841176,4.01985876597321,3.90036147621913,0,0.193341436584244,0.462145851343933,0.307007349452259,0,0,0,0.170453254832202,0.445160178233687,5.78497203763423,3.0750410778417,0.127612712494584,2.73126008309985,1.85938219718914,0,0,0,0.532306030317022,0,0.37064843820784,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0.235624804691373,0.606547444719948,0,0,0.48763373908959,0.243713489631284,1.05650146756755,0.9554993798559,0.707027159768564,1.13008116620243,0.551365343546124,0.66343897524122,1.31535265576129,1.15755106853338,0,0,0,0,0,0.0982490410131212,0,0,0.422215270595328,0,0.379473173765715,0.349934720244983,0.769776901804097,4.69211592875051,6.53345909167936,1.97701981631236,5.16606447205476,1.68471475667626,3.99087138183008,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0.102268682502155,0.246169610922139,0,0,0,0,0.493217028184668,0,0,0,0,0,0,0.524759999977174,1.44999915086959,0,0,0,1.72371686620732,0,0,0,0,0,0.110579259931225,0,0,0,0.278847488557207,0.230850775511391,0.113942055847001,0,0.628303510868405,0.108647371922008,0.31900115973192,2.83952539545773,2.13213910407454,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,1.06149077404007,0.611030144933625,0,0,0,0,0,0,0,0.391329237864179,0,1.18375320854817,0,0,0,0.150323419414493,0.207376382794494,0,0,0,0,0,0,0.694238953340524,0.783939179315021,0.609414446062818,2.44617335538842,0,0.0967563312890851,0,0,0.484945082442097,0,0.225980740780532,0.137041924646751,0,0,0.195551382734803,0.160317640503067,0.85381197895741,0,0,0,0.686379991447858,0.14405479798815,0,1.1784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| ||
|short_description=p@chr1:31907100..31907130,+ | |short_description=p@chr1:31907100..31907130,+ | ||
}} | }} |
Latest revision as of 07:11, 28 July 2015
Short description: | p@chr1:31907100..31907130, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:31907100..31907130, + |
Coexpression cluster: | C3969_Prostate_Keratinocyte_liver_Small_Tracheal_Hepatocyte_Fibroblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.21e-15 | 42 |
endodermal cell | 5.03e-11 | 58 |
transitional epithelial cell | 1.74e-10 | 4 |
urothelial cell | 1.74e-10 | 4 |
general ecto-epithelial cell | 2.13e-10 | 14 |
respiratory epithelial cell | 2.32e-09 | 13 |
epithelial cell of prostate | 9.68e-09 | 3 |
gingival epithelial cell | 2.72e-08 | 3 |
light melanocyte | 3.15e-08 | 3 |
ecto-epithelial cell | 6.84e-08 | 34 |
epithelial cell | 5.69e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.73e-13 | 99 |
orifice | 1.03e-11 | 36 |
endoderm-derived structure | 2.52e-11 | 160 |
endoderm | 2.52e-11 | 160 |
presumptive endoderm | 2.52e-11 | 160 |
mouth mucosa | 7.32e-11 | 13 |
urinary system structure | 8.53e-11 | 47 |
renal system | 1.75e-10 | 48 |
oral opening | 5.40e-09 | 22 |
urothelium | 2.24e-08 | 5 |
gingival epithelium | 2.72e-08 | 3 |
male genital duct | 2.72e-08 | 3 |
internal male genitalia | 2.72e-08 | 3 |
respiratory system | 2.98e-08 | 74 |
gingiva | 9.69e-08 | 8 |
sex gland | 2.94e-07 | 12 |
male reproductive gland | 2.94e-07 | 12 |
head | 5.67e-07 | 56 |
transitional epithelium | 5.76e-07 | 6 |
epithelial fold | 6.32e-07 | 47 |
anterior region of body | 7.01e-07 | 62 |
craniocervical region | 7.01e-07 | 62 |
intermediate mesoderm | 7.43e-07 | 28 |