FFCP PHASE1:Hg19::chr5:73109313..73109326,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64283 | |EntrezGene=64283 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt=B5MDA3 | |UniProt=B5MDA3 | ||
|association_with_transcript=-16bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end | |association_with_transcript=-16bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end | ||
|cluster_id=chr5:73109313..73109326,+ | |||
|coexpression_cluster_id=C4518 | |||
|description=CAGE_peak_4_at_RGNEF_5end | |description=CAGE_peak_4_at_RGNEF_5end | ||
|id=chr5:73109313..73109326,+ | |id=chr5:73109313..73109326,+ | ||
|ontology_enrichment_celltype=CL:1000497!3.95e-11!18;CL:0002518!3.95e-11!18;CL:1000507!4.15e-10!12;CL:1000494!4.15e-10!12;CL:1000449!1.08e-08!16;CL:0000223!1.81e-07!59;CL:0002076!2.57e-07!43;CL:0002681!5.29e-07!13;CL:0002584!5.29e-07!13;CL:0000066!9.95e-07!254 | |ontology_enrichment_celltype=CL:1000497!3.95e-11!18;CL:0002518!3.95e-11!18;CL:1000507!4.15e-10!12;CL:1000494!4.15e-10!12;CL:1000449!1.08e-08!16;CL:0000223!1.81e-07!59;CL:0002076!2.57e-07!43;CL:0002681!5.29e-07!13;CL:0002584!5.29e-07!13;CL:0000066!9.95e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:1000497;1.62e-22;17!CL:0002518;1.62e-22;17!CL:1000507;2.99e-20;10!CL:1000494;2.99e-20;10!CL:1000449;1.84e-13;15!CL:0000239;1.04e-11;3!CL:1000615;1.04e-11;3!CL:0002306;1.04e-11;3!CL:0000511;8.32e-10;1!CL:0002625;8.32e-10;1!CL:0000216;8.32e-10;1!CL:0000313;8.32e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,1.33e-22,17;CL:0002518,1.33e-22,17;CL:1000507,2.93e-20,10;CL:1000494,2.93e-20,10;CL:1000449,1.82e-13,15;CL:0000239,1.10e-11,3;CL:1000615,1.10e-11,3;CL:0002306,1.10e-11,3;CL:0000313,7.98e-10,1;CL:0000511,8.68e-10,1;CL:0002625,8.68e-10,1;CL:0000216,8.68e-10,1 | |||
|ontology_enrichment_development_v019=UBERON:0003918;3.62e-13;10!UBERON:0007687;3.62e-13;10 | |||
|ontology_enrichment_disease=DOID:120!5.96e-13!27;DOID:193!1.09e-11!29;DOID:2394!3.59e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:120;1.33e-22;27!DOID:193;5.89e-21;29!DOID:4468;1.83e-17;2!DOID:2152;8.32e-10;1!DOID:2394;2.86e-09;14!DOID:4362;2.81e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:120,1.52e-22,27;DOID:193,6.65e-21,29;DOID:4468,1.76e-17,2;DOID:2152,7.98e-10,1;DOID:2394,2.95e-09,14;DOID:4362,3.14e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0003133!3.56e-14!48;UBERON:0005156!5.52e-14!59;UBERON:0000990!5.52e-14!59;UBERON:0002113!2.09e-13!27;UBERON:0003918!2.09e-13!27;UBERON:0005095!2.09e-13!27;UBERON:0007687!2.09e-13!27;UBERON:0003100!2.64e-12!41;UBERON:0000489!7.22e-12!32;UBERON:0003134!1.39e-11!37;UBERON:0000474!1.39e-11!37;UBERON:0004876!3.79e-11!20;UBERON:0003886!9.28e-11!63;UBERON:0001008!1.16e-10!45;UBERON:0000080!1.18e-10!18;UBERON:0002120!1.18e-10!18;UBERON:0004875!1.18e-10!18;UBERON:0005721!1.18e-10!18;UBERON:0005754!1.18e-10!18;UBERON:0007297!1.18e-10!18;UBERON:0000058!2.00e-10!26;UBERON:0009773!4.15e-10!12;UBERON:0001231!4.15e-10!12;UBERON:0004810!4.15e-10!12;UBERON:0006554!7.68e-10!44;UBERON:0002553!9.30e-10!70;UBERON:0006555!1.20e-09!17;UBERON:0005103!1.20e-09!17;UBERON:0000083!1.20e-09!17;UBERON:0009201!1.20e-09!17;UBERON:0004819!1.20e-09!17;UBERON:0006553!1.20e-09!17;UBERON:0003074!1.20e-09!17;UBERON:0003060!1.20e-09!17;UBERON:0000991!5.78e-09!21;UBERON:0009196!5.78e-09!21;UBERON:0009117!5.78e-09!21;UBERON:0005564!5.78e-09!21;UBERON:0003064!8.64e-09!37;UBERON:0004211!1.08e-08!16;UBERON:0001285!1.08e-08!16;UBERON:0007684!1.08e-08!16;UBERON:0003220!1.08e-08!16;UBERON:0004208!1.08e-08!16;UBERON:0000464!1.11e-08!104;UBERON:0003887!1.23e-08!21;UBERON:0004176!2.12e-08!22;UBERON:0000466!2.87e-08!126;UBERON:0000992!3.67e-08!13;UBERON:0002417!8.42e-08!61;UBERON:0000916!8.42e-08!61;UBERON:0004175!1.47e-07!25;UBERON:0001225!5.29e-07!13;UBERON:0008987!5.29e-07!13;UBERON:0005172!6.38e-07!55;UBERON:0005173!6.38e-07!55;UBERON:0005904!8.81e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;5.35e-26;24!UBERON:0011143;5.35e-26;24!UBERON:0000489;2.71e-21;29!UBERON:0006554;1.53e-20;30!UBERON:0001008;1.53e-20;30!UBERON:0004211;2.99e-20;10!UBERON:0009773;2.99e-20;10!UBERON:0001231;2.99e-20;10!UBERON:0004810;2.99e-20;10!UBERON:0004909;7.06e-18;2!UBERON:0006555;1.84e-13;15!UBERON:0004819;1.84e-13;15!UBERON:0001285;1.84e-13;15!UBERON:0007684;1.84e-13;15!UBERON:0006853;1.04e-11;3!UBERON:0007685;1.04e-11;3!UBERON:0004134;1.04e-11;3!UBERON:0003133;8.17e-10;44!UBERON:0001136;8.32e-10;1!UBERON:0001343;8.32e-10;1!UBERON:0004911;8.32e-10;1!UBERON:0004910;8.32e-10;1!UBERON:0004813;8.32e-10;1!UBERON:0001000;4.15e-09;1!UBERON:0005352;4.15e-09;1!UBERON:0005904;4.79e-09;4!UBERON:0005172;1.88e-07;52!UBERON:0005173;1.88e-07;52!UBERON:0003134;2.84e-07;33!UBERON:0002118;3.91e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,5.70e-24,26;UBERON:0003918,5.70e-24,26;UBERON:0011143,5.70e-24,26;UBERON:0005095,5.70e-24,26;UBERON:0007687,5.70e-24,26;UBERON:0004810,2.93e-20,10;UBERON:0000489,6.78e-20,31;UBERON:0004909,7.07e-18,2;UBERON:0004211,1.82e-13,15;UBERON:0009773,1.82e-13,15;UBERON:0001231,1.82e-13,15;UBERON:0001285,1.82e-13,15;UBERON:0007684,1.82e-13,15;UBERON:0004208,1.82e-13,15;UBERON:0006554,1.14e-12,47;UBERON:0006555,1.29e-12,16;UBERON:0004819,1.29e-12,16;UBERON:0001008,2.23e-12,48;UBERON:0006853,1.10e-11,3;UBERON:0007685,1.10e-11,3;UBERON:0004134,1.10e-11,3;UBERON:0005172,7.46e-11,54;UBERON:0005173,7.46e-11,54;UBERON:0004911,7.98e-10,1;UBERON:0001136,8.68e-10,1;UBERON:0001343,8.68e-10,1;UBERON:0004910,8.68e-10,1;UBERON:0005154,8.68e-10,1;UBERON:0005295,8.68e-10,1;UBERON:0004813,8.68e-10,1;UBERON:0005297,8.68e-10,1;UBERON:0005294,8.68e-10,1;UBERON:0010141,8.68e-10,1;UBERON:0005891,8.68e-10,1;UBERON:0002417,1.24e-09,60;UBERON:0000916,1.24e-09,60;UBERON:0003133,1.42e-09,48;UBERON:0001000,4.87e-09,1;UBERON:0005352,4.87e-09,1;UBERON:0005904,5.30e-09,4;UBERON:0003103,2.42e-08,68;UBERON:0005156,1.36e-07,59;UBERON:0000990,1.36e-07,59;UBERON:0003134,2.82e-07,37;UBERON:0000474,2.82e-07,37;UBERON:0002118,3.67e-07,5;UBERON:0009569,6.97e-07,112 | |||
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| ||
|short_description=p4@RGNEF | |short_description=p4@RGNEF | ||
}} | }} |
Latest revision as of 16:18, 18 September 2015
Short description: | p4@RGNEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RGNEF_5end |
Coexpression cluster: | C4518_Renal_renal_serous_kidney_Sertoli_mesothelioma_mesenchymal |
Association with transcript: | -16bp_to_ENST00000296799, NM_001244364, uc011csr.1_5end |
EntrezGene: | RGNEF |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 1.33e-22 | 17 |
kidney epithelial cell | 1.33e-22 | 17 |
kidney tubule cell | 2.93e-20 | 10 |
nephron tubule epithelial cell | 2.93e-20 | 10 |
epithelial cell of nephron | 1.82e-13 | 15 |
brush border epithelial cell | 1.10e-11 | 3 |
kidney cortex tubule cell | 1.10e-11 | 3 |
epithelial cell of proximal tubule | 1.10e-11 | 3 |
serous secreting cell | 7.98e-10 | 1 |
androgen binding protein secreting cell | 8.68e-10 | 1 |
seminiferous tubule epithelial cell | 8.68e-10 | 1 |
Sertoli cell | 8.68e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 1.52e-22 | 27 |
reproductive organ cancer | 6.65e-21 | 29 |
clear cell adenocarcinoma | 1.76e-17 | 2 |
ovary epithelial cancer | 7.98e-10 | 1 |
ovarian cancer | 2.95e-09 | 14 |
cervical cancer | 3.14e-07 | 5 |