FFCP PHASE1:Hg19::chr6:49534004..49534016,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:49534004..49534016,+ | |||
|coexpression_cluster_id=C1506 | |||
|description=CAGE_peak_at_chr6:49534004..49534016,+ | |description=CAGE_peak_at_chr6:49534004..49534016,+ | ||
|id=chr6:49534004..49534016,+ | |id=chr6:49534004..49534016,+ | ||
|ontology_enrichment_celltype=CL:0002139!4.19e-58!24;CL:0000115!1.35e-38!35;CL:0000071!1.66e-38!18;CL:0002546!1.66e-38!18;CL:0002078!6.87e-30!44;CL:0000213!3.60e-22!57;CL:0000215!3.60e-22!57;CL:0005020!1.15e-21!6;CL:0002138!1.15e-21!6;CL:0005022!1.15e-21!6;CL:0002544!4.57e-21!6;CL:0002144!1.87e-16!3;CL:1000413!5.73e-14!9;CL:0002543!7.84e-14!6;CL:0002545!2.73e-11!2;CL:0000076!2.13e-09!62;CL:0000222!1.25e-08!119;CL:0002618!9.66e-08!3 | |ontology_enrichment_celltype=CL:0002139!4.19e-58!24;CL:0000115!1.35e-38!35;CL:0000071!1.66e-38!18;CL:0002546!1.66e-38!18;CL:0002078!6.87e-30!44;CL:0000213!3.60e-22!57;CL:0000215!3.60e-22!57;CL:0005020!1.15e-21!6;CL:0002138!1.15e-21!6;CL:0005022!1.15e-21!6;CL:0002544!4.57e-21!6;CL:0002144!1.87e-16!3;CL:1000413!5.73e-14!9;CL:0002543!7.84e-14!6;CL:0002545!2.73e-11!2;CL:0000076!2.13e-09!62;CL:0000222!1.25e-08!119;CL:0002618!9.66e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.55e-75;24!CL:0002138;2.51e-63;6!CL:0000115;1.09e-36;36!CL:0002078;6.15e-33;45!CL:0000071;2.76e-30;18!CL:0002144;1.43e-21;3!CL:0000213;2.25e-21;58!CL:0000215;2.25e-21;58!CL:0002544;3.95e-11;6!CL:0002543;3.95e-11;6!CL:0002545;5.93e-09;2!CL:1000413;1.02e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.18e-75,24;CL:0005020,7.06e-63,6;CL:0002138,7.06e-63,6;CL:0005022,7.06e-63,6;CL:0000115,3.27e-50,36;CL:0002078,5.07e-40,45;CL:0000213,7.16e-31,58;CL:0000215,7.16e-31,58;CL:0000071,1.49e-30,18;CL:0002546,1.49e-30,18;CL:0002144,8.53e-22,3;CL:0000222,2.60e-14,121;CL:0002543,2.91e-11,6;CL:0002544,3.75e-11,6;CL:0002545,6.94e-09,2;CL:0000076,1.37e-08,63;CL:1000413,9.85e-08,9 | |||
|ontology_enrichment_development_v019=CL:0005022;2.51e-63;6!CL:0002546;2.76e-30;18!CL:0000222;3.78e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.66e-38!18;UBERON:0004638!1.66e-38!18;UBERON:0004852!1.66e-38!18;UBERON:0000487!4.83e-31!22;UBERON:0006914!5.19e-27!25;UBERON:0000055!1.24e-17!69;UBERON:0001915!1.87e-16!3;UBERON:0001982!1.87e-16!3;UBERON:0001473!3.45e-16!8;UBERON:0004536!3.45e-16!8;UBERON:0006558!3.45e-16!8;UBERON:0002049!6.59e-15!79;UBERON:0007798!6.59e-15!79;UBERON:0003915!5.73e-14!9;UBERON:0004700!5.73e-14!9;UBERON:0001917!5.73e-14!9;UBERON:0002465!6.78e-13!10;UBERON:0005800!2.73e-11!2;UBERON:0001515!2.73e-11!2;UBERON:0004535!6.50e-11!110;UBERON:0001009!1.62e-10!113;UBERON:0003127!1.81e-10!2;UBERON:0001981!8.61e-10!60;UBERON:0007500!8.61e-10!60;UBERON:0004537!8.61e-10!60;UBERON:0006965!8.61e-10!60;UBERON:0001638!3.01e-09!9;UBERON:0003920!3.01e-09!9;UBERON:0004582!3.01e-09!9;UBERON:0002046!3.76e-09!5;UBERON:0004117!3.76e-09!5;UBERON:0007689!3.76e-09!5;UBERON:0007123!3.76e-09!5;UBERON:0003091!3.76e-09!5;UBERON:0004872!1.87e-07!84;UBERON:0003914!2.49e-07!118;UBERON:0000477!9.39e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;1.40e-47;8!UBERON:0004536;1.40e-47;8!UBERON:0006558;1.40e-47;8!UBERON:0002465;4.04e-38;10!UBERON:0004638;2.76e-30;18!UBERON:0001986;2.76e-30;18!UBERON:0004852;2.76e-30;18!UBERON:0000487;9.08e-25;22!UBERON:0006914;8.75e-22;25!UBERON:0010523;1.43e-21;3!UBERON:0001915;1.43e-21;3!UBERON:0001982;1.43e-21;3!UBERON:0000055;5.69e-19;65!UBERON:0000490;1.85e-15;33!UBERON:0002405;3.30e-14;27!UBERON:0002049;2.64e-13;75!UBERON:0007798;2.64e-13;75!UBERON:0005800;5.93e-09;2!UBERON:0001515;5.93e-09;2!UBERON:0002193;4.22e-08;42!UBERON:0001638;1.02e-07;9!UBERON:0003920;1.02e-07;9!UBERON:0003915;1.02e-07;9!UBERON:0004700;1.02e-07;9!UBERON:0001917;1.02e-07;9!UBERON:0004582;1.02e-07;9!UBERON:0004535;2.13e-07;109!UBERON:0001009;6.01e-07;112 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,3.05e-47,8;UBERON:0004536,3.05e-47,8;UBERON:0006558,3.05e-47,8;UBERON:0002465,7.51e-38,10;UBERON:0004638,1.49e-30,18;UBERON:0001986,1.49e-30,18;UBERON:0004852,1.49e-30,18;UBERON:0000055,3.31e-26,68;UBERON:0000487,5.52e-25,22;UBERON:0002049,9.85e-23,78;UBERON:0007798,9.85e-23,78;UBERON:0006914,5.65e-22,25;UBERON:0010523,8.53e-22,3;UBERON:0001915,8.53e-22,3;UBERON:0001982,8.53e-22,3;UBERON:0004535,5.36e-16,109;UBERON:0001009,1.53e-15,112;UBERON:0007500,3.43e-09,59;UBERON:0001981,3.43e-09,59;UBERON:0004537,3.43e-09,59;UBERON:0006965,3.43e-09,59;UBERON:0005800,6.94e-09,2;UBERON:0001515,6.94e-09,2;UBERON:0004111,4.90e-08,240;UBERON:0001638,8.31e-08,9;UBERON:0003920,8.31e-08,9;UBERON:0004582,8.31e-08,9;UBERON:0003915,9.85e-08,9;UBERON:0004700,9.85e-08,9;UBERON:0001917,9.85e-08,9 | |||
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|short_description=p@chr6:49534004..49534016,+ | |short_description=p@chr6:49534004..49534016,+ | ||
}} | }} |
Latest revision as of 02:14, 31 July 2015
Short description: | p@chr6:49534004..49534016, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:49534004..49534016, + |
Coexpression cluster: | C1506_Endothelial_Lymphatic_Hepatic_Renal_breast_heart_thyroid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.18e-75 | 24 |
lymphangioblast | 7.06e-63 | 6 |
endothelial cell of lymphatic vessel | 7.06e-63 | 6 |
vascular lymphangioblast | 7.06e-63 | 6 |
endothelial cell | 3.27e-50 | 36 |
meso-epithelial cell | 5.07e-40 | 45 |
lining cell | 7.16e-31 | 58 |
barrier cell | 7.16e-31 | 58 |
blood vessel endothelial cell | 1.49e-30 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.49e-30 | 18 |
capillary endothelial cell | 8.53e-22 | 3 |
mesodermal cell | 2.60e-14 | 121 |
vein endothelial cell | 2.91e-11 | 6 |
aortic endothelial cell | 3.75e-11 | 6 |
thoracic aorta endothelial cell | 6.94e-09 | 2 |
squamous epithelial cell | 1.37e-08 | 63 |
endothelial cell of artery | 9.85e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 3.05e-47 | 8 |
lymph vasculature | 3.05e-47 | 8 |
lymphatic part of lymphoid system | 3.05e-47 | 8 |
lymphoid system | 7.51e-38 | 10 |
blood vessel endothelium | 1.49e-30 | 18 |
endothelium | 1.49e-30 | 18 |
cardiovascular system endothelium | 1.49e-30 | 18 |
vessel | 3.31e-26 | 68 |
simple squamous epithelium | 5.52e-25 | 22 |
vasculature | 9.85e-23 | 78 |
vascular system | 9.85e-23 | 78 |
squamous epithelium | 5.65e-22 | 25 |
microcirculatory vessel | 8.53e-22 | 3 |
endothelium of capillary | 8.53e-22 | 3 |
capillary | 8.53e-22 | 3 |
cardiovascular system | 5.36e-16 | 109 |
circulatory system | 1.53e-15 | 112 |
epithelial tube open at both ends | 3.43e-09 | 59 |
blood vessel | 3.43e-09 | 59 |
blood vasculature | 3.43e-09 | 59 |
vascular cord | 3.43e-09 | 59 |
segment of aorta | 6.94e-09 | 2 |
thoracic aorta | 6.94e-09 | 2 |
anatomical conduit | 4.90e-08 | 240 |
vein | 8.31e-08 | 9 |
venous blood vessel | 8.31e-08 | 9 |
venous system | 8.31e-08 | 9 |
endothelial tube | 9.85e-08 | 9 |
arterial system endothelium | 9.85e-08 | 9 |
endothelium of artery | 9.85e-08 | 9 |