FFCP PHASE1:Hg19::chr6:75796102..75796109,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1303 | |EntrezGene=1303 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2188 | |HGNC=2188 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=111bp_to_AK057081_5end | |association_with_transcript=111bp_to_AK057081_5end | ||
|cluster_id=chr6:75796102..75796109,- | |||
|coexpression_cluster_id=C259 | |||
|description=CAGE_peak_8_at_COL12A1_5end | |description=CAGE_peak_8_at_COL12A1_5end | ||
|id=chr6:75796102..75796109,- | |id=chr6:75796102..75796109,- | ||
|ontology_enrichment_celltype=CL:0000055!1.51e-16!180;CL:0000057!2.88e-16!75;CL:0002620!2.43e-10!23;CL:0000499!3.96e-10!27;CL:0002334!1.84e-08!12;CL:0000048!1.63e-07!430;CL:0000723!2.29e-07!436;CL:0000034!4.49e-07!444 | |ontology_enrichment_celltype=CL:0000055!1.51e-16!180;CL:0000057!2.88e-16!75;CL:0002620!2.43e-10!23;CL:0000499!3.96e-10!27;CL:0002334!1.84e-08!12;CL:0000048!1.63e-07!430;CL:0000723!2.29e-07!436;CL:0000034!4.49e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0002620;3.63e-25;23!CL:0002334;1.22e-18;12!CL:0000153;1.30e-17;9!CL:0000447;1.30e-17;9!CL:0002580;3.03e-15;3!CL:0002615;5.06e-15;3!CL:0002579;1.11e-14;3!CL:0000135;2.11e-14;3!CL:0000388;2.11e-14;3!CL:0000136;8.01e-13;13!CL:0000138;1.59e-12;6!CL:0000499;1.45e-11;28!CL:0002617;9.77e-11;2!CL:0000327;2.52e-10;15!CL:0000057;1.95e-08;73!CL:0002537;3.12e-08;5!CL:0000214;9.35e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,2.66e-25,23;CL:0000057,9.45e-24,76;CL:0002334,1.20e-18,12;CL:0000153,1.26e-17,9;CL:0000447,1.26e-17,9;CL:0002580,3.25e-15,3;CL:0002615,4.96e-15,3;CL:0002579,9.94e-15,3;CL:0000135,2.72e-14,3;CL:0000388,2.72e-14,3;CL:0000134,2.71e-13,354;CL:0002320,7.15e-13,361;CL:0000058,1.91e-12,6;CL:0000138,1.91e-12,6;CL:0000499,1.54e-11,28;CL:0000219,2.17e-11,386;CL:0000136,5.03e-11,15;CL:0002617,1.00e-10,2;CL:0000048,2.26e-10,427;CL:0000327,2.48e-10,15;CL:0000723,4.13e-10,433;CL:0000034,9.03e-10,441;CL:0002537,3.88e-08,5;CL:0000214,7.60e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!2.87e-07!5;DOID:450!2.87e-07!5;DOID:66!2.87e-07!5;DOID:423!2.87e-07!5;DOID:0080000!2.87e-07!5;DOID:11722!2.87e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;1.24e-14;5!DOID:450;1.24e-14;5!DOID:66;1.24e-14;5!DOID:423;1.24e-14;5!DOID:0080000;1.24e-14;5!DOID:11722;1.24e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.38e-14,5;DOID:450,1.38e-14,5;DOID:66,1.38e-14,5;DOID:423,1.38e-14,5;DOID:0080000,1.38e-14,5;DOID:11722,1.38e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0003102!2.42e-10!95;UBERON:0003688!1.81e-09!6;UBERON:0002358!1.81e-09!6;UBERON:0003684!1.81e-09!6;UBERON:0001178!1.81e-09!6;UBERON:0002199!3.37e-08!45;UBERON:0002416!3.37e-08!45;UBERON:0002097!3.80e-08!40;UBERON:0000475!6.90e-08!365;UBERON:0000486!1.50e-07!82;UBERON:0001134!3.37e-07!61;UBERON:0002036!3.37e-07!61;UBERON:0003082!3.37e-07!61;UBERON:0004457!3.69e-07!12;UBERON:0000042!3.69e-07!12;UBERON:0002385!9.46e-07!63;UBERON:0001015!9.46e-07!63;UBERON:0000383!9.46e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;8.89e-32;9!UBERON:0000042;8.89e-32;9!UBERON:0003688;6.30e-28;6!UBERON:0002358;6.30e-28;6!UBERON:0003684;6.30e-28;6!UBERON:0001178;6.30e-28;6!UBERON:0001443;4.95e-15;11!UBERON:0007846;2.11e-14;3!UBERON:0000043;2.11e-14;3!UBERON:0007845;2.11e-14;3!UBERON:0000310;5.80e-12;10!UBERON:0002097;1.97e-11;41!UBERON:0005406;8.27e-11;2!UBERON:0002199;4.20e-10;46!UBERON:0002416;4.20e-10;46!UBERON:0003102;6.18e-07;50!UBERON:0006915;9.35e-07;3!UBERON:0007616;9.35e-07;3!UBERON:0002217;9.35e-07;3!UBERON:0002018;9.35e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,5.50e-28,6;UBERON:0002358,5.50e-28,6;UBERON:0003684,5.50e-28,6;UBERON:0001178,5.50e-28,6;UBERON:0004457,1.21e-23,12;UBERON:0000042,1.21e-23,12;UBERON:0002097,2.00e-15,41;UBERON:0001443,4.55e-15,11;UBERON:0007846,2.72e-14,3;UBERON:0000043,2.72e-14,3;UBERON:0007845,2.72e-14,3;UBERON:0002199,1.89e-13,46;UBERON:0002416,1.89e-13,46;UBERON:0002384,2.68e-12,371;UBERON:0000310,6.08e-12,10;UBERON:0005406,8.28e-11,2;UBERON:0004923,9.54e-09,66;UBERON:0006915,7.60e-07,3;UBERON:0007616,7.60e-07,3;UBERON:0002217,7.60e-07,3;UBERON:0002018,7.60e-07,3 | |||
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| ||
|short_description=p8@COL12A1 | |short_description=p8@COL12A1 | ||
}} | }} |
Latest revision as of 19:26, 19 September 2015
Short description: | p8@COL12A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_COL12A1_5end |
Coexpression cluster: | C259_Preadipocyte_Adipocyte_Fibroblast_Chondrocyte_tenocyte_normal_Ewing |
Association with transcript: | 111bp_to_AK057081_5end |
EntrezGene: | COL12A1 |
HGNC: | 2188 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 2.66e-25 | 23 |
fibroblast | 9.45e-24 | 76 |
preadipocyte | 1.20e-18 | 12 |
GAG secreting cell | 1.26e-17 | 9 |
carbohydrate secreting cell | 1.26e-17 | 9 |
preadipocyte of the breast | 3.25e-15 | 3 |
adipocyte of omentum tissue | 4.96e-15 | 3 |
omentum preadipocyte | 9.94e-15 | 3 |
fibrocyte | 2.72e-14 | 3 |
tendon cell | 2.72e-14 | 3 |
mesenchymal cell | 2.71e-13 | 354 |
connective tissue cell | 7.15e-13 | 361 |
chondroblast | 1.91e-12 | 6 |
chondrocyte | 1.91e-12 | 6 |
stromal cell | 1.54e-11 | 28 |
motile cell | 2.17e-11 | 386 |
fat cell | 5.03e-11 | 15 |
adipocyte of breast | 1.00e-10 | 2 |
multi fate stem cell | 2.26e-10 | 427 |
extracellular matrix secreting cell | 2.48e-10 | 15 |
somatic stem cell | 4.13e-10 | 433 |
stem cell | 9.03e-10 | 441 |
amnion mesenchymal stem cell | 3.88e-08 | 5 |
synovial cell | 7.60e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 5.50e-28 | 6 |
peritoneum | 5.50e-28 | 6 |
abdominal cavity | 5.50e-28 | 6 |
visceral peritoneum | 5.50e-28 | 6 |
cavity lining | 1.21e-23 | 12 |
serous membrane | 1.21e-23 | 12 |
skin of body | 2.00e-15 | 41 |
chest | 4.55e-15 | 11 |
dense regular connective tissue | 2.72e-14 | 3 |
tendon | 2.72e-14 | 3 |
regular connective tissue | 2.72e-14 | 3 |
integument | 1.89e-13 | 46 |
integumental system | 1.89e-13 | 46 |
connective tissue | 2.68e-12 | 371 |
breast | 6.08e-12 | 10 |
perirenal fat | 8.28e-11 | 2 |
organ component layer | 9.54e-09 | 66 |
stratified squamous epithelium | 7.60e-07 | 3 |
layer of synovial tissue | 7.60e-07 | 3 |
synovial joint | 7.60e-07 | 3 |
synovial membrane of synovial joint | 7.60e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.38e-14 | 5 |
myotonic disease | 1.38e-14 | 5 |
muscle tissue disease | 1.38e-14 | 5 |
myopathy | 1.38e-14 | 5 |
muscular disease | 1.38e-14 | 5 |
myotonic dystrophy | 1.38e-14 | 5 |