FFCP PHASE1:Hg19::chr6:10585980..10586009,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2651 | |EntrezGene=2651 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4204 | |HGNC=4204 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NFS9 | |UniProt=Q8NFS9 | ||
|association_with_transcript=0bp_to_NM_145655,uc003mze.2_5end | |association_with_transcript=0bp_to_NM_145655,uc003mze.2_5end | ||
|cluster_id=chr6:10585980..10586009,+ | |||
|coexpression_cluster_id=C33 | |||
|description=CAGE_peak_6_at_GCNT2_5end | |description=CAGE_peak_6_at_GCNT2_5end | ||
|id=chr6:10585980..10586009,+ | |id=chr6:10585980..10586009,+ | ||
|ontology_enrichment_celltype=CL:0000148!6.81e-16!10;CL:0000541!6.81e-16!10;CL:0002322!4.29e-11!5;CL:0000147!9.85e-11!14;CL:0000039!4.62e-10!7;CL:0000586!4.62e-10!7;CL:0000133!3.12e-07!59;CL:0000710!6.68e-07!20;CL:0002567!6.71e-07!3;CL:0002605!8.17e-07!3 | |ontology_enrichment_celltype=CL:0000148!6.81e-16!10;CL:0000541!6.81e-16!10;CL:0002322!4.29e-11!5;CL:0000147!9.85e-11!14;CL:0000039!4.62e-10!7;CL:0000586!4.62e-10!7;CL:0000133!3.12e-07!59;CL:0000710!6.68e-07!20;CL:0002567!6.71e-07!3;CL:0002605!8.17e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000148;5.80e-28;10!CL:0002322;2.37e-23;5!CL:0000147;1.27e-19;14!CL:0002567;9.91e-14;3!CL:0002605;1.33e-13;3!CL:0000710;2.32e-13;20!CL:0000764;3.94e-11;2!CL:0000558;3.94e-11;2!CL:0000039;4.65e-11;7!CL:0000586;4.65e-11;7!CL:0000128;3.18e-10;7!CL:0000126;3.18e-10;7!CL:0000127;3.18e-10;7!CL:0000075;1.42e-09;27!CL:0000540;6.83e-08;6!CL:0000404;6.83e-08;6!CL:0002321;1.32e-07;15!CL:0002319;1.94e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,5.60e-28,10;CL:0000541,5.60e-28,10;CL:0002322,2.61e-23,5;CL:0000147,1.24e-19,14;CL:0002567,9.48e-14,3;CL:0002605,1.48e-13,3;CL:0000133,1.91e-13,59;CL:0000710,2.28e-13,20;CL:0000333,1.55e-12,41;CL:0000764,3.94e-11,2;CL:0000765,3.94e-11,2;CL:0000050,3.94e-11,2;CL:0000038,3.94e-11,2;CL:0000558,3.94e-11,2;CL:0000547,3.94e-11,2;CL:0000549,3.94e-11,2;CL:0000550,3.94e-11,2;CL:0000552,3.94e-11,2;CL:0000039,4.65e-11,7;CL:0000586,4.65e-11,7;CL:0000221,1.63e-10,72;CL:0000128,3.56e-10,7;CL:0000126,3.56e-10,7;CL:0000127,3.56e-10,7;CL:0002453,3.56e-10,7;CL:0000075,1.40e-09,27;CL:0000540,6.83e-08,6;CL:0000031,6.83e-08,6;CL:0000404,6.83e-08,6;CL:0002319,2.03e-07,25;CL:0002077,2.35e-07,34 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.35e-11;10!UBERON:0005564;1.35e-11;10!CL:0000133;4.13e-09;59!CL:0000031;6.83e-08;6 | |||
|ontology_enrichment_disease=DOID:3095!4.41e-07!22;DOID:2994!4.41e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;5.15e-07;22!DOID:2994;5.15e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,5.01e-07,22;DOID:2994,5.01e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.05e-35!115;UBERON:0001049!1.53e-22!57;UBERON:0005068!1.53e-22!57;UBERON:0006241!1.53e-22!57;UBERON:0007135!1.53e-22!57;UBERON:0002020!6.06e-21!34;UBERON:0003528!6.06e-21!34;UBERON:0001893!7.64e-21!34;UBERON:0001017!9.50e-21!82;UBERON:0005743!1.62e-20!86;UBERON:0002616!6.30e-20!59;UBERON:0002780!1.09e-19!41;UBERON:0001890!1.09e-19!41;UBERON:0006240!1.09e-19!41;UBERON:0002791!1.32e-19!33;UBERON:0003080!4.56e-19!42;UBERON:0000073!8.18e-19!94;UBERON:0001016!8.18e-19!94;UBERON:0001869!1.37e-18!32;UBERON:0000956!3.59e-18!25;UBERON:0000203!3.59e-18!25;UBERON:0000955!6.42e-17!69;UBERON:0006238!6.42e-17!69;UBERON:0003075!1.93e-15!86;UBERON:0007284!1.93e-15!86;UBERON:0000178!2.29e-14!15;UBERON:0000179!2.29e-14!15;UBERON:0000463!2.29e-14!15;UBERON:0002346!2.38e-14!90;UBERON:0002619!7.43e-14!22;UBERON:0003056!3.28e-12!61;UBERON:0001950!3.04e-11!20;UBERON:0000153!6.05e-08!129;UBERON:0007811!6.05e-08!129;UBERON:0002298!1.67e-07!8;UBERON:0004121!1.81e-07!169;UBERON:0000033!2.40e-07!123;UBERON:0000924!4.38e-07!173;UBERON:0006601!4.38e-07!173;UBERON:0000200!5.47e-07!6 | |ontology_enrichment_uberon=UBERON:0007023!1.05e-35!115;UBERON:0001049!1.53e-22!57;UBERON:0005068!1.53e-22!57;UBERON:0006241!1.53e-22!57;UBERON:0007135!1.53e-22!57;UBERON:0002020!6.06e-21!34;UBERON:0003528!6.06e-21!34;UBERON:0001893!7.64e-21!34;UBERON:0001017!9.50e-21!82;UBERON:0005743!1.62e-20!86;UBERON:0002616!6.30e-20!59;UBERON:0002780!1.09e-19!41;UBERON:0001890!1.09e-19!41;UBERON:0006240!1.09e-19!41;UBERON:0002791!1.32e-19!33;UBERON:0003080!4.56e-19!42;UBERON:0000073!8.18e-19!94;UBERON:0001016!8.18e-19!94;UBERON:0001869!1.37e-18!32;UBERON:0000956!3.59e-18!25;UBERON:0000203!3.59e-18!25;UBERON:0000955!6.42e-17!69;UBERON:0006238!6.42e-17!69;UBERON:0003075!1.93e-15!86;UBERON:0007284!1.93e-15!86;UBERON:0000178!2.29e-14!15;UBERON:0000179!2.29e-14!15;UBERON:0000463!2.29e-14!15;UBERON:0002346!2.38e-14!90;UBERON:0002619!7.43e-14!22;UBERON:0003056!3.28e-12!61;UBERON:0001950!3.04e-11!20;UBERON:0000153!6.05e-08!129;UBERON:0007811!6.05e-08!129;UBERON:0002298!1.67e-07!8;UBERON:0004121!1.81e-07!169;UBERON:0000033!2.40e-07!123;UBERON:0000924!4.38e-07!173;UBERON:0006601!4.38e-07!173;UBERON:0000200!5.47e-07!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.65e-23;15!UBERON:0000179;3.65e-23;15!UBERON:0000463;3.65e-23;15!UBERON:0000473;1.10e-09;8!UBERON:0002390;2.99e-09;32!UBERON:0003135;4.73e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.51e-23,15;UBERON:0000179,3.51e-23,15;UBERON:0000463,3.51e-23,15;UBERON:0000473,1.10e-09,8;UBERON:0003135,4.73e-07,11;UBERON:0007023,8.64e-07,114 | |||
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| ||
|short_description=p6@GCNT2 | |short_description=p6@GCNT2 | ||
}} | }} |
Latest revision as of 14:21, 19 September 2015
Short description: | p6@GCNT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GCNT2_5end |
Coexpression cluster: | C33_Reticulocytes_liver_Whole_blood_chronic_acute_spleen |
Association with transcript: | 0bp_to_NM_145655, uc003mze.2_5end |
EntrezGene: | GCNT2 |
HGNC: | 4204 |
UniProt: | Q8NFS9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 5.60e-28 | 10 |
melanoblast | 5.60e-28 | 10 |
embryonic stem cell | 2.61e-23 | 5 |
pigment cell | 1.24e-19 | 14 |
light melanocyte | 9.48e-14 | 3 |
astrocyte of the cerebral cortex | 1.48e-13 | 3 |
neurectodermal cell | 1.91e-13 | 59 |
neurecto-epithelial cell | 2.28e-13 | 20 |
migratory neural crest cell | 1.55e-12 | 41 |
erythroid lineage cell | 3.94e-11 | 2 |
erythroblast | 3.94e-11 | 2 |
megakaryocyte-erythroid progenitor cell | 3.94e-11 | 2 |
erythroid progenitor cell | 3.94e-11 | 2 |
reticulocyte | 3.94e-11 | 2 |
proerythroblast | 3.94e-11 | 2 |
basophilic erythroblast | 3.94e-11 | 2 |
polychromatophilic erythroblast | 3.94e-11 | 2 |
orthochromatic erythroblast | 3.94e-11 | 2 |
germ line cell | 4.65e-11 | 7 |
germ cell | 4.65e-11 | 7 |
ectodermal cell | 1.63e-10 | 72 |
oligodendrocyte | 3.56e-10 | 7 |
macroglial cell | 3.56e-10 | 7 |
astrocyte | 3.56e-10 | 7 |
oligodendrocyte precursor cell | 3.56e-10 | 7 |
columnar/cuboidal epithelial cell | 1.40e-09 | 27 |
neuron | 6.83e-08 | 6 |
neuroblast | 6.83e-08 | 6 |
electrically signaling cell | 6.83e-08 | 6 |
neural cell | 2.03e-07 | 25 |
ecto-epithelial cell | 2.35e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
blood | 3.51e-23 | 15 |
haemolymphatic fluid | 3.51e-23 | 15 |
organism substance | 3.51e-23 | 15 |
testis | 1.10e-09 | 8 |
male reproductive organ | 4.73e-07 | 11 |
adult organism | 8.64e-07 | 114 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 5.01e-07 | 22 |
germ cell cancer | 5.01e-07 | 22 |