FFCP PHASE1:Hg19::chr16:20911854..20911871,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:20911854..20911871,+
|short_description=p7@LYRM1
|description=CAGE_peak_7_at_LYRM1_5end
|association_with_transcript=-203bp_to_ENST00000219168,ENST0000041...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57149 | |EntrezGene=57149 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25074 | |HGNC=25074 | ||
|TSSclassifier=strong | |||
|UniProt=O43325 | |UniProt=O43325 | ||
|association_with_transcript=-203bp_to_ENST00000219168,ENST00000412082,NM_001128301,NM_001128302,uc002dia.3,uc010bwl.2,uc010bwm.2_5end | |||
|cluster_id=chr16:20911854..20911871,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_7_at_LYRM1_5end | |||
|id=chr16:20911854..20911871,+ | |||
|ontology_enrichment_celltype=CL:0000860!3.06e-18!45;CL:0002057!1.26e-17!42;CL:0000766!1.70e-13!76;CL:0000839!8.24e-13!70;CL:0002194!1.27e-11!63;CL:0000576!1.27e-11!63;CL:0000040!1.27e-11!63;CL:0000559!1.27e-11!63;CL:0000557!1.08e-10!71;CL:0002009!1.42e-10!65;CL:0000763!9.61e-10!112;CL:0000049!9.61e-10!112;CL:0000738!1.59e-08!140;CL:0000037!1.80e-07!172;CL:0000566!1.80e-07!172;CL:0002087!2.05e-07!119;CL:0002031!2.97e-07!124;CL:0000988!8.12e-07!182;CL:0002032!9.45e-07!165;CL:0000837!9.45e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.80e-45;33!CL:0002057;6.80e-45;33!CL:0000473;8.77e-31;39!CL:0000234;8.77e-31;39!CL:0000576;9.43e-24;48!CL:0000766;4.71e-16;69!CL:0000763;3.40e-08;100!CL:0002087;1.89e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.29e-46,42;CL:0002057,3.29e-46,42;CL:0000473,4.29e-39,48;CL:0000234,4.29e-39,48;CL:0000766,7.65e-31,72;CL:0002194,3.56e-29,59;CL:0000576,3.56e-29,59;CL:0000040,3.56e-29,59;CL:0000559,3.56e-29,59;CL:0000839,9.53e-29,66;CL:0000557,3.65e-28,67;CL:0002009,6.69e-28,61;CL:0000763,3.41e-19,108;CL:0000049,3.41e-19,108;CL:0000738,9.81e-16,136;CL:0002087,4.68e-15,115;CL:0002031,3.41e-13,120;CL:0000037,4.63e-12,168;CL:0000988,7.28e-11,177;CL:0002032,8.29e-11,161;CL:0000837,8.29e-11,161 | |||
|ontology_enrichment_development_v019=CL:0002057;5.30e-34;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.24e-13!57;UBERON:0005068!1.24e-13!57;UBERON:0006241!1.24e-13!57;UBERON:0007135!1.24e-13!57;UBERON:0002616!4.98e-11!59;UBERON:0001017!7.51e-11!82;UBERON:0003080!2.33e-10!42;UBERON:0002371!5.34e-10!80;UBERON:0002390!5.98e-10!102;UBERON:0003061!5.98e-10!102;UBERON:0002193!6.62e-10!112;UBERON:0002780!6.71e-10!41;UBERON:0001890!6.71e-10!41;UBERON:0006240!6.71e-10!41;UBERON:0005743!1.07e-09!86;UBERON:0000073!7.61e-09!94;UBERON:0001016!7.61e-09!94;UBERON:0001474!8.53e-09!86;UBERON:0007023!1.02e-08!115;UBERON:0002346!1.53e-08!90;UBERON:0000955!1.76e-08!69;UBERON:0006238!1.76e-08!69;UBERON:0002405!2.60e-08!115;UBERON:0003075!8.94e-08!86;UBERON:0007284!8.94e-08!86;UBERON:0002020!1.26e-07!34;UBERON:0003528!1.26e-07!34;UBERON:0001893!3.18e-07!34;UBERON:0002791!4.26e-07!33 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.83e-27,76;UBERON:0002390,5.38e-25,98;UBERON:0003061,5.38e-25,98;UBERON:0001474,3.39e-24,82;UBERON:0004765,9.62e-24,90;UBERON:0002193,1.44e-21,108;UBERON:0001434,3.00e-20,100;UBERON:0002405,4.54e-20,93;UBERON:0003081,2.51e-11,203;UBERON:0002204,4.56e-10,167 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,1.11389717664042,0,0,0,0,0.487932798790507,0.246242116153576,0.204000691244253,0,0.286235987131057,0.547497700291537,0.502170558379211,0.229240217243854,0.164201178899891,0.393553906568396,0.786728553697808,0.767658796194425,1.08371286321253,0,0.30120591877825,0,0.154934401160603,0.426507697462265,0,13.2958898047651,9.6261334785668,7.16135873362311,0,0,0.515151135268373,1.30858414901608,1.51150377475524,3.63876091781724,5.57829688573643,2.87817521615278,7.74265927237759,10.6446185159196,5.37937483711111,5.91205574721463,33.440331031452,20.6555098746824,24.3767675869815,1.88242339542605,0.818718450173537,2.24723484445085,39.7909060082173,27.278967301468,26.2128221577607,1.64925650093358,1.59570926097305,3.83602275479425,13.3496249769149,14.7520158419696,21.1759564658495,11.0549412712967,10.429658368404,9.99068685643537,6.65939452896706,20.6235476153036,12.3420331101945,0.211255286311942,0,0,0.22465726229299,0.150176892841506,0.48217676009124,0,0,0.547992461293902,0,0,0,0,0.400395987036012,0,0,0,2.84606484554724,0.587237189370939,0,0,0.560508562981536,0,0.196709770113833,0.393010762749165,0.411202997999018,0.167186495390678,0.32592226663359,0,0,0,0,0.221533894583621,0.541607727530031,0.128091319725675,0.390178042679635,0,0,0.289803085735052,0.593146252648242,0,0,0.113309342697566,0,0.68725489096526,0.506039384039006,0,0,0,0.602300476311091,0.255973222308837,0,0.236777252044017,0,0.403213486449465,0,0.144824403882799,2.43806866313962,2.01210257911091,0.255725123687061,0,0.50133791063589,0,0,0,0.189069634328136,0,0,0.523916301990851,0,0,0.324547393654683,0,0.398873881556595,0,0.571994910780128,0,0.39752481473341,0,1.04142150482278,0,0,0.550236083880135,0.208994966536811,0.775250277507987,0.71153252537342,0.33472061276467,0,0,0.24406205754817,0,0.81014194788176,0.446498641420399,0.22452937262617,0.450445921933289,0,0,0.183201743930407,2.63560834872127,0,0,0,0.25326102332916,2.91300197789081,0.860509862246441,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0.570471821544449,0,0.117434498643765,0,0.140450806702248,0.408308342509787,0,0,1.18800285728205,0,0,0,0.168336113954066,0.500474079487857,0,0,0,0,0.113432183160021,0.358779271377724,0.213557388818567,0,0,0,1.03056216018252,0,0,0,0.504867548488229,0.184099797284599,0,0,0,0.169560592310488,0,0,0,0,0.132529768321485,0.116193942869518,0.310983165046111,0,0,0,0,0,0.928735856063958,1.44375896333917,0.118306800039844,0,0,0.110293972732394,0,0,0.134831308160164,0.392442930250692,0,0.738155454624648,0,0,0,0,0,1.18157981336281,0.882926198829301,0.245976877086227,0,0,0,0.100528972411631,0.277765335475589,0,0,0,0,0,0.577465791044295,0.462985512576611,0.380508304469197,0.790204397959275,3.43394464837949,0.246217006087397,0,0,0,0,0,0,0,0,0,0.176096868026452,0.829312462163088,1.58531948758658,3.40854570251226,0.126995788584338,0,0,0,0.205654985406647,0,0,0,0,0,0,0,0,0,0,0.257207374262142,2.83698264046557,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0.502257091432126,0,0.239624855491583,0,2.85273810081437,0.144781306667579,0.205476322550383,0,0.112085143993527,0.985153801009636,1.2937654491571,0.77005821767849,0,2.60279707715243,1.54657762555539,0.670065061337395,1.27587750330633,0.749007023947182,2.99161459204025,0,1.2269149171914,0,0.813795071099207,0.831883446123229,0.535286966391485,0.157702415033935,0.702848489956279,0.300946099727719,0,0,0,0.184369168541703,0,0.391602314925481,0.343143423810856,1.03384013061444,2.15714200818617,1.38745825144478,0.303127571446259,0,0,0,0.767309866440312,0.561320188866147,0.128139149255701,0,0.321707842287215,0,0.771048469013278,0,0.0821271560138091,0,0,0.241718899183244,0.200506470303285,0.276242966807689,0,0.364182336013434,0.262248829918848,0.451199612907412,0.0770153371044148,0.784349769176855,0,0.105551628892876,0,0,0.647747748306418,0,0,0,0,0,0,0.877039506583738,0.522870902049801,0,0,0,0.618246069886334,0.0915694648183434,0.165018999841176,0,0,0,0.386682873168488,0.308097234229289,0.15350367472613,0.413509717453592,0.429680979473094,0.435050081742686,0.0852266274161009,0.178064071293475,0,0,0.510450849978337,0,0,0.31481234683064,0,0,0.532306030317022,0,0.18532421910392,0.143124886741991,0.372158369359667,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0,0.202182481573316,0,0,0,0,0,0.272999822815972,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0,0.281695602532241,0,0.0982490410131212,0,0,0.422215270595328,0.987884678879706,0.75894634753143,0.349934720244983,0.192444225451024,0,0,1.22386941009813,0,0,0,0.229723400206959,0,0,1.13929437434833,0.714695326373367,0.822724546172388,1.94541993357815,0.540031437238115,0,0.106824071127473,0,0.245040215981032,0,0,0.142283686696828,0.318852545457645,0.59873811429845,0.5745161103971,0.635020748171649,0,1.96558024679421,0,0.156679895773023,0,0.50787533340481,0.642352300414798,0,0,0,0.307240764308458,0,0.166849141711909,0.19538809540204,0.278406173895242,1.2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| ||
|short_description=p7@LYRM1 | |||
}} | }} |
Latest revision as of 03:09, 25 September 2015
Short description: | p7@LYRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LYRM1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -203bp_to_ENST00000219168, ENST00000412082, NM_001128301, NM_001128302, uc002dia.3, uc010bwl.2, uc010bwm.2_5end |
EntrezGene: | LYRM1 |
HGNC: | 25074 |
UniProt: | O43325 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.29e-46 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.29e-46 | 42 |
defensive cell | 4.29e-39 | 48 |
phagocyte | 4.29e-39 | 48 |
myeloid leukocyte | 7.65e-31 | 72 |
monopoietic cell | 3.56e-29 | 59 |
monocyte | 3.56e-29 | 59 |
monoblast | 3.56e-29 | 59 |
promonocyte | 3.56e-29 | 59 |
myeloid lineage restricted progenitor cell | 9.53e-29 | 66 |
granulocyte monocyte progenitor cell | 3.65e-28 | 67 |
macrophage dendritic cell progenitor | 6.69e-28 | 61 |
myeloid cell | 3.41e-19 | 108 |
common myeloid progenitor | 3.41e-19 | 108 |
leukocyte | 9.81e-16 | 136 |
nongranular leukocyte | 4.68e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 3.41e-13 | 120 |
hematopoietic stem cell | 4.63e-12 | 168 |
hematopoietic cell | 7.28e-11 | 177 |
hematopoietic oligopotent progenitor cell | 8.29e-11 | 161 |
hematopoietic multipotent progenitor cell | 8.29e-11 | 161 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.83e-27 | 76 |
hematopoietic system | 5.38e-25 | 98 |
blood island | 5.38e-25 | 98 |
bone element | 3.39e-24 | 82 |
skeletal element | 9.62e-24 | 90 |
hemolymphoid system | 1.44e-21 | 108 |
skeletal system | 3.00e-20 | 100 |
immune system | 4.54e-20 | 93 |
lateral plate mesoderm | 2.51e-11 | 203 |
musculoskeletal system | 4.56e-10 | 167 |