FFCP PHASE1:Hg19::chr16:85858477..85858488,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr16:85858477..85858488,+
|short_description=p@chr16:85858477..85858488,+
|description=CAGE_peak_at_chr16:85858477..85858488,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:85858477..85858488,+ | |||
|coexpression_cluster_id=C741 | |||
|description=CAGE_peak_at_chr16:85858477..85858488,+ | |||
|id=chr16:85858477..85858488,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.01e-92!42;CL:0000860!2.06e-85!45;CL:0002009!8.80e-73!65;CL:0002194!3.61e-66!63;CL:0000576!3.61e-66!63;CL:0000040!3.61e-66!63;CL:0000559!3.61e-66!63;CL:0000557!4.57e-66!71;CL:0000766!2.05e-61!76;CL:0000839!6.67e-59!70;CL:0000738!5.91e-46!140;CL:0000763!9.12e-45!112;CL:0000049!9.12e-45!112;CL:0002087!2.54e-41!119;CL:0002031!2.57e-39!124;CL:0000037!7.29e-36!172;CL:0000566!7.29e-36!172;CL:0000988!1.97e-33!182;CL:0002032!1.61e-31!165;CL:0000837!1.61e-31!165;CL:0002393!1.37e-29!9;CL:0002397!1.37e-29!9;CL:0000134!9.48e-13!358;CL:0002320!2.45e-12!365;CL:0000034!5.23e-11!444;CL:0000219!7.02e-11!390;CL:0001014!4.96e-10!2;CL:0001016!4.96e-10!2;CL:0000048!6.07e-10!430;CL:0000723!1.11e-09!436;CL:0000767!3.63e-07!3;CL:0000840!4.14e-07!5;CL:0001029!4.14e-07!5;CL:0000842!5.18e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.31e-26;33!CL:0002057;7.31e-26;33!CL:0000473;2.64e-19;39!CL:0000234;2.64e-19;39!CL:0000576;6.30e-19;48!CL:0000766;2.64e-18;69!CL:0002393;4.08e-16;6!CL:0002397;4.08e-16;6!CL:0000767;1.85e-14;3!CL:0000226;5.05e-14;3!CL:0000842;5.05e-14;3!CL:0002087;8.17e-10;104!CL:0000763;4.46e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.20e-38,42;CL:0002057,5.20e-38,42;CL:0000473,4.99e-33,48;CL:0000234,4.99e-33,48;CL:0002009,2.13e-29,61;CL:0000766,1.78e-28,72;CL:0000557,1.27e-26,67;CL:0002194,4.80e-26,59;CL:0000576,4.80e-26,59;CL:0000040,4.80e-26,59;CL:0000559,4.80e-26,59;CL:0000839,4.01e-23,66;CL:0000763,4.11e-21,108;CL:0000049,4.11e-21,108;CL:0000738,4.30e-21,136;CL:0002087,5.06e-17,115;CL:0000037,1.30e-16,168;CL:0000988,1.22e-15,177;CL:0000767,1.51e-14,3;CL:0000226,3.39e-14,3;CL:0000842,3.39e-14,3;CL:0002031,4.97e-14,120;CL:0002032,2.06e-13,161;CL:0000837,2.06e-13,161;CL:0002393,6.25e-11,9;CL:0002397,6.25e-11,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.08e-26;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.41e-58!80;UBERON:0001474!2.51e-53!86;UBERON:0002390!8.09e-50!102;UBERON:0003061!8.09e-50!102;UBERON:0002193!1.08e-44!112;UBERON:0004765!2.49e-44!101;UBERON:0001434!2.49e-44!101;UBERON:0002405!4.96e-38!115;UBERON:0002204!8.00e-24!167;UBERON:0003081!2.29e-19!216;UBERON:0002384!8.98e-12!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.13e-23,98;UBERON:0003061,2.13e-23,98;UBERON:0002371,2.87e-23,76;UBERON:0001474,1.96e-21,82;UBERON:0002193,4.90e-21,108;UBERON:0004765,2.30e-19,90;UBERON:0002405,1.12e-18,93;UBERON:0001434,3.09e-17,100;UBERON:0003081,4.26e-10,203;UBERON:0002204,1.73e-09,167 | |||
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|short_description=p@chr16:85858477..85858488,+ | |||
}} | }} |
Latest revision as of 13:04, 25 July 2015
Short description: | p@chr16:85858477..85858488, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:85858477..85858488, + |
Coexpression cluster: | C741_immature_CD14_Basophils_Peripheral_Mallassezderived_Astrocyte_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.20e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.20e-38 | 42 |
defensive cell | 4.99e-33 | 48 |
phagocyte | 4.99e-33 | 48 |
macrophage dendritic cell progenitor | 2.13e-29 | 61 |
myeloid leukocyte | 1.78e-28 | 72 |
granulocyte monocyte progenitor cell | 1.27e-26 | 67 |
monopoietic cell | 4.80e-26 | 59 |
monocyte | 4.80e-26 | 59 |
monoblast | 4.80e-26 | 59 |
promonocyte | 4.80e-26 | 59 |
myeloid lineage restricted progenitor cell | 4.01e-23 | 66 |
myeloid cell | 4.11e-21 | 108 |
common myeloid progenitor | 4.11e-21 | 108 |
leukocyte | 4.30e-21 | 136 |
nongranular leukocyte | 5.06e-17 | 115 |
hematopoietic stem cell | 1.30e-16 | 168 |
hematopoietic cell | 1.22e-15 | 177 |
basophil | 1.51e-14 | 3 |
single nucleate cell | 3.39e-14 | 3 |
mononuclear cell | 3.39e-14 | 3 |
hematopoietic lineage restricted progenitor cell | 4.97e-14 | 120 |
hematopoietic oligopotent progenitor cell | 2.06e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.06e-13 | 161 |
intermediate monocyte | 6.25e-11 | 9 |
CD14-positive, CD16-positive monocyte | 6.25e-11 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.13e-23 | 98 |
blood island | 2.13e-23 | 98 |
bone marrow | 2.87e-23 | 76 |
bone element | 1.96e-21 | 82 |
hemolymphoid system | 4.90e-21 | 108 |
skeletal element | 2.30e-19 | 90 |
immune system | 1.12e-18 | 93 |
skeletal system | 3.09e-17 | 100 |
lateral plate mesoderm | 4.26e-10 | 203 |
musculoskeletal system | 1.73e-09 | 167 |