FFCP PHASE1:Hg19::chr17:25416565..25416581,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:25416565..25416581,+
|short_description=p@chr17:25416565..25416581,+
|description=CAGE_peak_at_chr17:25416565..25416581,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:25416565..25416581,+ | |||
|description=CAGE_peak_at_chr17:25416565..25416581,+ | |||
|id=chr17:25416565..25416581,+ | |||
|ontology_enrichment_celltype=CL:0000082!1.63e-08!19;CL:0000054!7.41e-07!2;CL:0000137!7.41e-07!2;CL:0000092!7.41e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000082;9.21e-11;19!CL:0002178;2.56e-09;3!CL:0002553;3.11e-07;1!CL:0000319;4.08e-07;1!CL:0002379;5.19e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,9.29e-11,19;CL:0002178,2.51e-09,3;CL:0002553,3.02e-07,1;CL:0000319,4.08e-07,1;CL:0002379,5.50e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.43e-07;29 | |||
|ontology_enrichment_disease=DOID:162!6.03e-27!235;DOID:14566!4.32e-26!239;DOID:0050687!5.08e-20!143;DOID:0050686!1.09e-14!137;DOID:305!2.04e-13!106;DOID:0050615!3.12e-13!16;DOID:1324!3.54e-11!15;DOID:1325!1.85e-10!7;DOID:3904!1.85e-10!7;DOID:1036!2.58e-09!8;DOID:299!2.71e-09!25;DOID:5409!3.60e-07!4;DOID:200!7.41e-07!2;DOID:4305!7.41e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:0050615;2.19e-17;16!DOID:1325;6.33e-14;7!DOID:3904;6.33e-14;7!DOID:1324;8.87e-14;15!DOID:1036;1.51e-12;8!DOID:0060085;1.36e-07;1!DOID:3165;1.36e-07;1!DOID:0060121;1.36e-07;1!DOID:2438;1.36e-07;1!DOID:4418;1.36e-07;1!DOID:0050619;2.59e-07;1!DOID:1357;2.59e-07;1!DOID:1115;3.02e-07;20!DOID:3030;4.08e-07;1!DOID:3620;5.19e-07;1!DOID:3565;5.19e-07;1!DOID:5409;5.36e-07;4!DOID:1749;7.36e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.50e-23,235;DOID:14566,1.01e-22,239;DOID:0050687,7.12e-19,143;DOID:0050615,2.19e-17,16;DOID:1325,6.44e-14,7;DOID:3904,6.44e-14,7;DOID:1324,8.97e-14,15;DOID:1036,1.53e-12,8;DOID:0050686,1.35e-11,137;DOID:305,6.34e-11,106;DOID:0060085,1.36e-07,1;DOID:3165,1.36e-07,1;DOID:0060121,1.36e-07,1;DOID:2438,1.36e-07,1;DOID:4418,1.36e-07,1;DOID:0050619,2.52e-07,1;DOID:1357,2.52e-07,1;DOID:1115,3.02e-07,20;DOID:3030,4.08e-07,1;DOID:5409,5.36e-07,4;DOID:3620,5.50e-07,1;DOID:3565,5.50e-07,1;DOID:1749,7.18e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004802!1.63e-08!19;UBERON:0000115!1.63e-08!19;UBERON:0005911!2.88e-07!82;UBERON:0002048!3.71e-07!22;UBERON:0000117!3.71e-07!22;UBERON:0000171!3.71e-07!22;UBERON:0000170!3.71e-07!22;UBERON:0005597!3.71e-07!22;UBERON:0000118!3.71e-07!22;UBERON:0003296!7.58e-07!4;UBERON:0010133!7.58e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;9.21e-11;19!UBERON:0000115;9.21e-11;19!UBERON:0002048;3.22e-09;22!UBERON:0004807;3.22e-09;22!UBERON:0000117;3.22e-09;22!UBERON:0000171;3.22e-09;22!UBERON:0000170;3.22e-09;22!UBERON:0001764;2.59e-07;1!UBERON:0001825;2.59e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,9.29e-11,19;UBERON:0000115,9.29e-11,19;UBERON:0002048,3.25e-09,22;UBERON:0000117,3.25e-09,22;UBERON:0000171,3.25e-09,22;UBERON:0000170,3.25e-09,22;UBERON:0005597,3.25e-09,22;UBERON:0000118,3.25e-09,22;UBERON:0001764,2.52e-07,1;UBERON:0001825,2.52e-07,1;UBERON:0004807,4.06e-07,28 | |||
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| ||
|short_description=p@chr17:25416565..25416581,+ | |||
}} | }} |
Latest revision as of 14:48, 25 July 2015
Short description: | p@chr17:25416565..25416581, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:25416565..25416581, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 9.29e-11 | 19 |
epithelial cell of stomach | 2.51e-09 | 3 |
lung fibroblast | 3.02e-07 | 1 |
mucus secreting cell | 4.08e-07 | 1 |
meningothelial cell | 5.50e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 9.29e-11 | 19 |
lung epithelium | 9.29e-11 | 19 |
lung | 3.25e-09 | 22 |
respiratory tube | 3.25e-09 | 22 |
respiration organ | 3.25e-09 | 22 |
pair of lungs | 3.25e-09 | 22 |
lung primordium | 3.25e-09 | 22 |
lung bud | 3.25e-09 | 22 |
maxillary sinus | 2.52e-07 | 1 |
paranasal sinus | 2.52e-07 | 1 |
respiratory system epithelium | 4.06e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.50e-23 | 235 |
disease of cellular proliferation | 1.01e-22 | 239 |
cell type cancer | 7.12e-19 | 143 |
respiratory system cancer | 2.19e-17 | 16 |
bronchus cancer | 6.44e-14 | 7 |
bronchogenic carcinoma | 6.44e-14 | 7 |
lung cancer | 8.97e-14 | 15 |
chronic leukemia | 1.53e-12 | 8 |
organ system cancer | 1.35e-11 | 137 |
carcinoma | 6.34e-11 | 106 |
organ system benign neoplasm | 1.36e-07 | 1 |
skin benign neoplasm | 1.36e-07 | 1 |
integumentary system benign neoplasm | 1.36e-07 | 1 |
dermis tumor | 1.36e-07 | 1 |
cutaneous fibrous histiocytoma | 1.36e-07 | 1 |
paranasal sinus cancer | 2.52e-07 | 1 |
maxillary sinus cancer | 2.52e-07 | 1 |
sarcoma | 3.02e-07 | 20 |
mucinous adenocarcinoma | 4.08e-07 | 1 |
lung small cell carcinoma | 5.36e-07 | 4 |
central nervous system cancer | 5.50e-07 | 1 |
meningioma | 5.50e-07 | 1 |
squamous cell carcinoma | 7.18e-07 | 14 |