FFCP PHASE1:Hg19::chrX:18725656..18725663,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5475 | |EntrezGene=5475 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9243 | |HGNC=9243 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-96bp_to_uc004cys.2_5end | |association_with_transcript=-96bp_to_uc004cys.2_5end | ||
|cluster_id=chrX:18725656..18725663,+ | |||
|description=CAGE_peak_4_at_PPEF1_5end | |description=CAGE_peak_4_at_PPEF1_5end | ||
|id=chrX:18725656..18725663,+ | |id=chrX:18725656..18725663,+ | ||
|ontology_enrichment_celltype=CL:0000817!2.27e-10!3;CL:0000946!3.28e-08!1;CL:0000786!3.28e-08!1;CL:0000980!3.28e-08!1 | |ontology_enrichment_celltype=CL:0000817!2.27e-10!3;CL:0000946!3.28e-08!1;CL:0000786!3.28e-08!1;CL:0000980!3.28e-08!1 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006238;2.63e-07;10 | |||
|ontology_enrichment_disease=DOID:171!6.48e-07!10 | |ontology_enrichment_disease=DOID:171!6.48e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:5409;8.00e-18;4!DOID:1325;8.57e-11;7!DOID:3904;8.57e-11;7!DOID:3905;1.08e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,8.69e-18,4;DOID:1325,8.99e-11,7;DOID:3904,8.99e-11,7;DOID:3905,1.12e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0002619!3.84e-50!22;UBERON:0001950!7.02e-47!20;UBERON:0000956!4.34e-44!25;UBERON:0000203!4.34e-44!25;UBERON:0002780!1.03e-40!41;UBERON:0001890!1.03e-40!41;UBERON:0006240!1.03e-40!41;UBERON:0001869!7.86e-40!32;UBERON:0003080!1.07e-39!42;UBERON:0001893!2.08e-37!34;UBERON:0002791!3.66e-33!33;UBERON:0000955!7.45e-33!69;UBERON:0006238!7.45e-33!69;UBERON:0002020!3.79e-32!34;UBERON:0003528!3.79e-32!34;UBERON:0000073!1.06e-31!94;UBERON:0001016!1.06e-31!94;UBERON:0001017!2.31e-30!82;UBERON:0005743!8.17e-29!86;UBERON:0001049!1.20e-28!57;UBERON:0005068!1.20e-28!57;UBERON:0006241!1.20e-28!57;UBERON:0007135!1.20e-28!57;UBERON:0002616!1.37e-27!59;UBERON:0003056!1.33e-26!61;UBERON:0001871!1.47e-22!7;UBERON:0002346!1.54e-19!90;UBERON:0000033!3.61e-19!123;UBERON:0000200!5.28e-19!6;UBERON:0000153!4.06e-18!129;UBERON:0007811!4.06e-18!129;UBERON:0003075!4.45e-18!86;UBERON:0007284!4.45e-18!86;UBERON:0000924!2.23e-17!173;UBERON:0006601!2.23e-17!173;UBERON:0004121!4.05e-16!169;UBERON:0002021!1.27e-13!5;UBERON:0007023!8.31e-13!115;UBERON:0002771!2.38e-10!3;UBERON:0007190!1.71e-08!1;UBERON:0002022!1.84e-08!1;UBERON:0003112!2.29e-08!1;UBERON:0000032!2.29e-08!1;UBERON:0005253!2.29e-08!1;UBERON:0003128!2.29e-08!1;UBERON:0002241!2.29e-08!1;UBERON:0001703!2.29e-08!1;UBERON:0004761!2.29e-08!1;UBERON:0009617!2.29e-08!1;UBERON:0002581!2.64e-08!1;UBERON:0002902!4.07e-08!1;UBERON:0009899!4.07e-08!1;UBERON:0000025!2.04e-07!194;UBERON:0000349!7.71e-07!5 | |ontology_enrichment_uberon=UBERON:0002619!3.84e-50!22;UBERON:0001950!7.02e-47!20;UBERON:0000956!4.34e-44!25;UBERON:0000203!4.34e-44!25;UBERON:0002780!1.03e-40!41;UBERON:0001890!1.03e-40!41;UBERON:0006240!1.03e-40!41;UBERON:0001869!7.86e-40!32;UBERON:0003080!1.07e-39!42;UBERON:0001893!2.08e-37!34;UBERON:0002791!3.66e-33!33;UBERON:0000955!7.45e-33!69;UBERON:0006238!7.45e-33!69;UBERON:0002020!3.79e-32!34;UBERON:0003528!3.79e-32!34;UBERON:0000073!1.06e-31!94;UBERON:0001016!1.06e-31!94;UBERON:0001017!2.31e-30!82;UBERON:0005743!8.17e-29!86;UBERON:0001049!1.20e-28!57;UBERON:0005068!1.20e-28!57;UBERON:0006241!1.20e-28!57;UBERON:0007135!1.20e-28!57;UBERON:0002616!1.37e-27!59;UBERON:0003056!1.33e-26!61;UBERON:0001871!1.47e-22!7;UBERON:0002346!1.54e-19!90;UBERON:0000033!3.61e-19!123;UBERON:0000200!5.28e-19!6;UBERON:0000153!4.06e-18!129;UBERON:0007811!4.06e-18!129;UBERON:0003075!4.45e-18!86;UBERON:0007284!4.45e-18!86;UBERON:0000924!2.23e-17!173;UBERON:0006601!2.23e-17!173;UBERON:0004121!4.05e-16!169;UBERON:0002021!1.27e-13!5;UBERON:0007023!8.31e-13!115;UBERON:0002771!2.38e-10!3;UBERON:0007190!1.71e-08!1;UBERON:0002022!1.84e-08!1;UBERON:0003112!2.29e-08!1;UBERON:0000032!2.29e-08!1;UBERON:0005253!2.29e-08!1;UBERON:0003128!2.29e-08!1;UBERON:0002241!2.29e-08!1;UBERON:0001703!2.29e-08!1;UBERON:0004761!2.29e-08!1;UBERON:0009617!2.29e-08!1;UBERON:0002581!2.64e-08!1;UBERON:0002902!4.07e-08!1;UBERON:0009899!4.07e-08!1;UBERON:0000025!2.04e-07!194;UBERON:0000349!7.71e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0001876;4.27e-34;2!UBERON:0000349;1.50e-14;5!UBERON:0001871;8.57e-11;6!UBERON:0002420;1.08e-08;9!UBERON:0007245;1.08e-08;9!UBERON:0010009;1.08e-08;9!UBERON:0010011;1.08e-08;9!UBERON:0000454;1.08e-08;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001876,3.61e-34,2;UBERON:0000349,1.40e-14,5;UBERON:0001871,8.16e-11,6;UBERON:0002420,1.04e-08,9;UBERON:0007245,1.04e-08,9;UBERON:0010009,1.04e-08,9;UBERON:0010011,1.04e-08,9;UBERON:0000454,1.04e-08,9 | |||
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|short_description=p4@PPEF1 | |short_description=p4@PPEF1 | ||
}} | }} |
Latest revision as of 07:23, 20 September 2015
Short description: | p4@PPEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PPEF1_5end |
Coexpression cluster: | NA |
Association with transcript: | -96bp_to_uc004cys.2_5end |
EntrezGene: | PPEF1 |
HGNC: | 9243 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amygdala | 3.61e-34 | 2 |
limbic system | 1.40e-14 | 5 |
temporal lobe | 8.16e-11 | 6 |
basal ganglion | 1.04e-08 | 9 |
nuclear complex of neuraxis | 1.04e-08 | 9 |
aggregate regional part of brain | 1.04e-08 | 9 |
collection of basal ganglia | 1.04e-08 | 9 |
cerebral subcortex | 1.04e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 8.69e-18 | 4 |
bronchus cancer | 8.99e-11 | 7 |
bronchogenic carcinoma | 8.99e-11 | 7 |
lung carcinoma | 1.12e-08 | 9 |