FFCP PHASE1:Hg19::chrX:38132803..38132847,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6103 | |EntrezGene=6103 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10295 | |HGNC=10295 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=347bp_to_ENST00000476559_5end | |association_with_transcript=347bp_to_ENST00000476559_5end | ||
|cluster_id=chrX:38132803..38132847,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_5_at_RPGR_5end | |description=CAGE_peak_5_at_RPGR_5end | ||
|id=chrX:38132803..38132847,- | |id=chrX:38132803..38132847,- | ||
|ontology_enrichment_celltype=CL:0002057!9.22e-26!42;CL:0000860!1.32e-23!45;CL:0000738!3.19e-21!140;CL:0002087!3.52e-21!119;CL:0002031!1.10e-18!124;CL:0000766!2.00e-16!76;CL:0002194!3.38e-16!63;CL:0000576!3.38e-16!63;CL:0000040!3.38e-16!63;CL:0000559!3.38e-16!63;CL:0002009!1.65e-15!65;CL:0000839!2.48e-15!70;CL:0000037!3.34e-15!172;CL:0000566!3.34e-15!172;CL:0000557!5.02e-15!71;CL:0002032!2.25e-14!165;CL:0000837!2.25e-14!165;CL:0000988!9.03e-14!182;CL:0000763!7.78e-10!112;CL:0000049!7.78e-10!112;CL:0000945!1.40e-08!24;CL:0000826!1.40e-08!24 | |ontology_enrichment_celltype=CL:0002057!9.22e-26!42;CL:0000860!1.32e-23!45;CL:0000738!3.19e-21!140;CL:0002087!3.52e-21!119;CL:0002031!1.10e-18!124;CL:0000766!2.00e-16!76;CL:0002194!3.38e-16!63;CL:0000576!3.38e-16!63;CL:0000040!3.38e-16!63;CL:0000559!3.38e-16!63;CL:0002009!1.65e-15!65;CL:0000839!2.48e-15!70;CL:0000037!3.34e-15!172;CL:0000566!3.34e-15!172;CL:0000557!5.02e-15!71;CL:0002032!2.25e-14!165;CL:0000837!2.25e-14!165;CL:0000988!9.03e-14!182;CL:0000763!7.78e-10!112;CL:0000049!7.78e-10!112;CL:0000945!1.40e-08!24;CL:0000826!1.40e-08!24 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.96e-56;33!CL:0002057;1.96e-56;33!CL:0000473;1.36e-38;39!CL:0000234;1.36e-38;39!CL:0000576;6.32e-24;48!CL:0002087;6.29e-17;104!CL:0000766;5.20e-16;69!CL:0000763;1.59e-09;100!CL:0000738;9.02e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.32e-48,42;CL:0002057,2.32e-48,42;CL:0000473,5.54e-42,48;CL:0000234,5.54e-42,48;CL:0002194,4.79e-33,59;CL:0000576,4.79e-33,59;CL:0000040,4.79e-33,59;CL:0000559,4.79e-33,59;CL:0002009,6.83e-32,61;CL:0000766,3.20e-30,72;CL:0000839,2.62e-29,66;CL:0000557,7.75e-29,67;CL:0002087,1.82e-28,115;CL:0002031,3.74e-27,120;CL:0000738,4.22e-26,136;CL:0002032,1.52e-21,161;CL:0000837,1.52e-21,161;CL:0000037,1.66e-20,168;CL:0000988,2.70e-19,177;CL:0000763,2.83e-19,108;CL:0000049,2.83e-19,108;CL:0000134,7.16e-09,354;CL:0002320,1.26e-08,361;CL:0000219,9.21e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;5.98e-33;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060060;1.48e-09;1!DOID:0060061;1.48e-09;1!DOID:8691;1.48e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.48e-09,1;DOID:0060061,1.48e-09,1;DOID:8691,1.48e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001474!7.72e-15!86;UBERON:0002371!7.36e-14!80;UBERON:0002390!1.60e-12!102;UBERON:0003061!1.60e-12!102;UBERON:0004765!1.39e-11!101;UBERON:0001434!1.39e-11!101;UBERON:0002405!2.96e-11!115;UBERON:0002193!9.23e-11!112;UBERON:0002771!2.22e-07!3 | |ontology_enrichment_uberon=UBERON:0001474!7.72e-15!86;UBERON:0002371!7.36e-14!80;UBERON:0002390!1.60e-12!102;UBERON:0003061!1.60e-12!102;UBERON:0004765!1.39e-11!101;UBERON:0001434!1.39e-11!101;UBERON:0002405!2.96e-11!115;UBERON:0002193!9.23e-11!112;UBERON:0002771!2.22e-07!3 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.82e-25,76;UBERON:0001474,3.98e-23,82;UBERON:0002405,7.59e-23,93;UBERON:0002390,1.52e-21,98;UBERON:0003061,1.52e-21,98;UBERON:0004765,7.55e-21,90;UBERON:0002193,2.69e-19,108;UBERON:0001434,1.66e-18,100;UBERON:0002204,5.41e-10,167;UBERON:0003081,6.58e-09,203;UBERON:0002384,2.72e-08,371 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.49513948857586,7.88165658719479,8.34334281925,0,0,0.154816123316076,0,0,0,0,0.142169232487422,0,0,0,0.217010870715852,0,0,0,0,0,0,0.929716147622738,0.822335776043652,1.54853185447552,1.1507695692886,0.512321413058201,1.89185783910868,38.9562619232379,32.9197188627751,20.3139729891513,0,0,1.79778787556068,41.3213254700718,43.0044896281965,34.5242047931482,0,0,0,9.57690487474327,12.4824749432051,8.09668923694247,0,0,0.217188844705117,6.65939452896706,38.6691517786943,23.1017542831846,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,1.49801404789436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0.63337622438398,0,0,0,0,5.6619010512092,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0.295547618953547,0,0,0,0,0.113942055847001,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0,0,0,0,0,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0.132864840313363,0,0,0,0,4.99968489637325,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0.606965604236632,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0.4226557275834,0,0,0,2.49852889812322,0,0,0,0,0,0.143339583151451,0,0,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@RPGR | |short_description=p5@RPGR | ||
}} | }} |
Latest revision as of 23:53, 24 September 2015
Short description: | p5@RPGR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RPGR_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 347bp_to_ENST00000476559_5end |
EntrezGene: | RPGR |
HGNC: | 10295 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.32e-48 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.32e-48 | 42 |
defensive cell | 5.54e-42 | 48 |
phagocyte | 5.54e-42 | 48 |
monopoietic cell | 4.79e-33 | 59 |
monocyte | 4.79e-33 | 59 |
monoblast | 4.79e-33 | 59 |
promonocyte | 4.79e-33 | 59 |
macrophage dendritic cell progenitor | 6.83e-32 | 61 |
myeloid leukocyte | 3.20e-30 | 72 |
myeloid lineage restricted progenitor cell | 2.62e-29 | 66 |
granulocyte monocyte progenitor cell | 7.75e-29 | 67 |
nongranular leukocyte | 1.82e-28 | 115 |
hematopoietic lineage restricted progenitor cell | 3.74e-27 | 120 |
leukocyte | 4.22e-26 | 136 |
hematopoietic oligopotent progenitor cell | 1.52e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.52e-21 | 161 |
hematopoietic stem cell | 1.66e-20 | 168 |
hematopoietic cell | 2.70e-19 | 177 |
myeloid cell | 2.83e-19 | 108 |
common myeloid progenitor | 2.83e-19 | 108 |
mesenchymal cell | 7.16e-09 | 354 |
connective tissue cell | 1.26e-08 | 361 |
motile cell | 9.21e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.82e-25 | 76 |
bone element | 3.98e-23 | 82 |
immune system | 7.59e-23 | 93 |
hematopoietic system | 1.52e-21 | 98 |
blood island | 1.52e-21 | 98 |
skeletal element | 7.55e-21 | 90 |
hemolymphoid system | 2.69e-19 | 108 |
skeletal system | 1.66e-18 | 100 |
musculoskeletal system | 5.41e-10 | 167 |
lateral plate mesoderm | 6.58e-09 | 203 |
connective tissue | 2.72e-08 | 371 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.48e-09 | 1 |
cutaneous T cell lymphoma | 1.48e-09 | 1 |
mycosis fungoides | 1.48e-09 | 1 |