FFCP PHASE1:Hg19::chr19:54290224..54290230,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:54290224..54290230,+ | |||
|coexpression_cluster_id=C157 | |||
|description=CAGE_peak_at_chr19:54290224..54290230,+ | |description=CAGE_peak_at_chr19:54290224..54290230,+ | ||
|id=chr19:54290224..54290230,+ | |id=chr19:54290224..54290230,+ | ||
|ontology_enrichment_celltype=CL:0002322!6.37e-42!5;CL:0000039!1.89e-30!7;CL:0000586!1.89e-30!7;CL:0000540!4.88e-13!6;CL:0000031!4.88e-13!6;CL:0000404!4.88e-13!6;CL:0000047!6.52e-10!8;CL:0002563!1.55e-09!4;CL:0000148!3.64e-08!10;CL:0000541!3.64e-08!10 | |ontology_enrichment_celltype=CL:0002322!6.37e-42!5;CL:0000039!1.89e-30!7;CL:0000586!1.89e-30!7;CL:0000540!4.88e-13!6;CL:0000031!4.88e-13!6;CL:0000404!4.88e-13!6;CL:0000047!6.52e-10!8;CL:0002563!1.55e-09!4;CL:0000148!3.64e-08!10;CL:0000541!3.64e-08!10 | ||
|ontology_enrichment_celltype_v019=CL:0002322;6.96e-58;5!CL:0000039;1.20e-27;7!CL:0000586;1.20e-27;7!CL:0002321;2.25e-19;15!CL:0002563;7.47e-13;4!CL:0000148;4.02e-11;10!CL:0000540;1.15e-08;6!CL:0000404;1.15e-08;6!CL:0000147;4.27e-08;14!CL:0002253;2.28e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.96e-58,5;CL:0000039,1.20e-27,7;CL:0000586,1.20e-27,7;CL:0002563,7.70e-13,4;CL:0000148,4.02e-11,10;CL:0000541,4.02e-11,10;CL:0000540,1.13e-08,6;CL:0000031,1.13e-08,6;CL:0000404,1.13e-08,6;CL:0000147,4.27e-08,14;CL:0002253,2.28e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.85e-19;10!UBERON:0005564;1.85e-19;10!CL:0000031;1.15e-08;6 | |||
|ontology_enrichment_disease=DOID:3095!5.35e-18!22;DOID:2994!5.35e-18!22;DOID:1799!2.08e-09!1;DOID:10165!2.08e-09!1;DOID:1798!2.08e-09!1;DOID:305!9.13e-08!106 | |ontology_enrichment_disease=DOID:3095!5.35e-18!22;DOID:2994!5.35e-18!22;DOID:1799!2.08e-09!1;DOID:10165!2.08e-09!1;DOID:1798!2.08e-09!1;DOID:305!9.13e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.93e-13;22!DOID:2994;1.93e-13;22!DOID:3910;5.44e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.96e-13,22;DOID:2994,1.96e-13,22;DOID:3910,5.28e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.38e-17!8;UBERON:0003135!7.62e-13!11;UBERON:0003101!1.19e-09!22;UBERON:0000079!1.19e-09!22;UBERON:0001242!1.55e-09!4;UBERON:0001262!1.55e-09!4;UBERON:0004786!1.55e-09!4;UBERON:0004808!1.55e-09!4;UBERON:0001277!1.55e-09!4;UBERON:0001052!2.27e-09!4;UBERON:0003350!8.53e-08!5;UBERON:0004907!1.15e-07!5;UBERON:0000060!6.90e-07!12;UBERON:0000991!8.75e-07!21;UBERON:0009196!8.75e-07!21;UBERON:0009117!8.75e-07!21;UBERON:0005564!8.75e-07!21 | |ontology_enrichment_uberon=UBERON:0000473!1.38e-17!8;UBERON:0003135!7.62e-13!11;UBERON:0003101!1.19e-09!22;UBERON:0000079!1.19e-09!22;UBERON:0001242!1.55e-09!4;UBERON:0001262!1.55e-09!4;UBERON:0004786!1.55e-09!4;UBERON:0004808!1.55e-09!4;UBERON:0001277!1.55e-09!4;UBERON:0001052!2.27e-09!4;UBERON:0003350!8.53e-08!5;UBERON:0004907!1.15e-07!5;UBERON:0000060!6.90e-07!12;UBERON:0000991!8.75e-07!21;UBERON:0009196!8.75e-07!21;UBERON:0009117!8.75e-07!21;UBERON:0005564!8.75e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;3.08e-24;8!UBERON:0003135;1.02e-17;11!UBERON:0003101;1.72e-13;22!UBERON:0000079;1.72e-13;22!UBERON:0001242;7.47e-13;4!UBERON:0001262;7.47e-13;4!UBERON:0004786;7.47e-13;4!UBERON:0004808;7.47e-13;4!UBERON:0001277;7.47e-13;4!UBERON:0000922;9.51e-12;49!UBERON:0000991;2.14e-09;21!UBERON:0000485;1.01e-07;7!UBERON:0003929;1.01e-07;7!UBERON:0004903;5.44e-07;2!UBERON:0002173;5.44e-07;2!UBERON:0002186;5.44e-07;2!UBERON:0003350;7.33e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.08e-24,8;UBERON:0003135,1.02e-17,11;UBERON:0003101,1.72e-13,22;UBERON:0000079,1.72e-13,22;UBERON:0001242,7.70e-13,4;UBERON:0001262,7.70e-13,4;UBERON:0004786,7.70e-13,4;UBERON:0004808,7.70e-13,4;UBERON:0001277,7.70e-13,4;UBERON:0000991,2.14e-09,21;UBERON:0009196,2.14e-09,21;UBERON:0009117,2.14e-09,21;UBERON:0005564,2.14e-09,21;UBERON:0004176,5.61e-09,22;UBERON:0004903,5.28e-07,2;UBERON:0002173,5.28e-07,2;UBERON:0002186,5.28e-07,2;UBERON:0003350,7.44e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.2225029152362,3.84336328132307,11.0384245726042,9.01851178633723,5.55105871926382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.62528318967304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.64726972753922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98895302764489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869178975376065,0,0,0,0,0,0,0,0,0,0,0,0,0,85.6599612889681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,66.4026912306487,0,0,0,0,0,0,0,0.482259445395058,4.53880140770872,7.89336642255452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20192129160065,0.126698501011437,77.919465922874,27.7906101476183,53.29904173021,149.170985878963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.2225029152362,3.84336328132307,11.0384245726042,9.01851178633723,5.55105871926382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.62528318967304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.64726972753922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98895302764489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869178975376065,0,0,0,0,0,0,0,0,0,0,0,0,0,85.6599612889681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,66.4026912306487,0,0,0,0,0,0,0,0.482259445395058,4.53880140770872,7.89336642255452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20192129160065,0.126698501011437,77.919465922874,27.7906101476183,53.29904173021,149.170985878963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:54290224..54290230,+ | |short_description=p@chr19:54290224..54290230,+ | ||
}} | }} |
Latest revision as of 17:01, 27 July 2015
Short description: | p@chr19:54290224..54290230, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:54290224..54290230, + |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.96e-58 | 5 |
germ line cell | 1.20e-27 | 7 |
germ cell | 1.20e-27 | 7 |
intestinal epithelial cell | 7.70e-13 | 4 |
melanocyte | 4.02e-11 | 10 |
melanoblast | 4.02e-11 | 10 |
neuron | 1.13e-08 | 6 |
neuroblast | 1.13e-08 | 6 |
electrically signaling cell | 1.13e-08 | 6 |
pigment cell | 4.27e-08 | 14 |
epithelial cell of large intestine | 2.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 3.08e-24 | 8 |
male reproductive organ | 1.02e-17 | 11 |
male organism | 1.72e-13 | 22 |
male reproductive system | 1.72e-13 | 22 |
intestinal mucosa | 7.70e-13 | 4 |
wall of intestine | 7.70e-13 | 4 |
gastrointestinal system mucosa | 7.70e-13 | 4 |
gastrointestinal system epithelium | 7.70e-13 | 4 |
intestinal epithelium | 7.70e-13 | 4 |
gonad | 2.14e-09 | 21 |
indifferent external genitalia | 2.14e-09 | 21 |
indifferent gonad | 2.14e-09 | 21 |
gonad primordium | 2.14e-09 | 21 |
external genitalia | 5.61e-09 | 22 |
bronchoalveolar duct junction | 5.28e-07 | 2 |
alveolar duct | 5.28e-07 | 2 |
bronchiole | 5.28e-07 | 2 |
epithelium of mucosa | 7.44e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.96e-13 | 22 |
germ cell cancer | 1.96e-13 | 22 |
lung adenocarcinoma | 5.28e-07 | 2 |