FFCP PHASE1:Hg19::chr1:3371160..3371199,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27237 | |EntrezGene=27237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15515 | |HGNC=15515 | ||
|TSSclassifier=strong | |||
|UniProt=B3KTS4,Q5VV41 | |UniProt=B3KTS4,Q5VV41 | ||
|association_with_transcript=13bp_to_NM_014448,uc001akg.3_5end | |association_with_transcript=13bp_to_NM_014448,uc001akg.3_5end | ||
|cluster_id=chr1:3371160..3371199,+ | |||
|description=CAGE_peak_2_at_ARHGEF16_5end | |description=CAGE_peak_2_at_ARHGEF16_5end | ||
|id=chr1:3371160..3371199,+ | |id=chr1:3371160..3371199,+ | ||
|ontology_enrichment_celltype=CL:0000066!5.60e-34!254;CL:0000223!7.58e-17!59;CL:0002076!7.75e-15!43;CL:0002368!6.91e-08!13;CL:0000039!8.19e-08!7;CL:0000586!8.19e-08!7;CL:0002251!6.09e-07!21 | |ontology_enrichment_celltype=CL:0000066!5.60e-34!254;CL:0000223!7.58e-17!59;CL:0002076!7.75e-15!43;CL:0002368!6.91e-08!13;CL:0000039!8.19e-08!7;CL:0000586!8.19e-08!7;CL:0002251!6.09e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.63e-12;7!CL:0000586;1.63e-12;7!CL:0002076;2.22e-07;42!CL:0002541;5.45e-07;3!CL:0002251;8.09e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.49e-19,253;CL:0000039,1.02e-12,7;CL:0000586,1.02e-12,7;CL:0000223,5.74e-10,58;CL:0002076,4.74e-09,42;CL:0002541,6.70e-07,3;CL:0002251,6.83e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0006595;1.84e-09;86 | |||
|ontology_enrichment_disease=DOID:305!1.19e-36!106;DOID:0050687!7.44e-27!143;DOID:162!1.12e-11!235;DOID:14566!7.07e-11!239;DOID:1749!2.23e-09!14;DOID:299!5.16e-09!25 | |ontology_enrichment_disease=DOID:305!1.19e-36!106;DOID:0050687!7.44e-27!143;DOID:162!1.12e-11!235;DOID:14566!7.07e-11!239;DOID:1749!2.23e-09!14;DOID:299!5.16e-09!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.60e-10;14!DOID:305;3.89e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.76e-23,106;DOID:0050687,2.01e-17,143;DOID:1749,1.69e-10,14;DOID:162,1.89e-07,235;DOID:14566,4.81e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.10e-33!169;UBERON:0000925!4.10e-33!169;UBERON:0006595!4.10e-33!169;UBERON:0001007!1.60e-29!155;UBERON:0001555!1.60e-29!155;UBERON:0007026!1.60e-29!155;UBERON:0004921!1.83e-28!129;UBERON:0004185!1.83e-28!129;UBERON:0000077!3.02e-24!130;UBERON:0001041!1.84e-19!98;UBERON:0000466!4.38e-18!126;UBERON:0001004!4.55e-17!72;UBERON:0000464!7.13e-16!104;UBERON:0000065!7.16e-16!53;UBERON:0005911!1.38e-14!82;UBERON:0005177!2.69e-14!107;UBERON:0008947!2.97e-14!38;UBERON:0003258!2.97e-14!38;UBERON:0000072!1.99e-12!46;UBERON:0000062!5.08e-12!511;UBERON:0003104!5.44e-10!238;UBERON:0009142!5.44e-10!238;UBERON:0000064!8.09e-10!219;UBERON:0000481!1.35e-09!347;UBERON:0001048!1.61e-09!168;UBERON:0009569!2.07e-09!113;UBERON:0005178!2.78e-09!34;UBERON:0002224!2.78e-09!34;UBERON:0005409!3.53e-09!35;UBERON:0001008!4.24e-09!45;UBERON:0005153!5.88e-09!37;UBERON:0005156!7.93e-09!59;UBERON:0000990!7.93e-09!59;UBERON:0005181!8.33e-09!35;UBERON:0000063!9.37e-09!97;UBERON:0006554!1.08e-08!44;UBERON:0002553!3.83e-08!70;UBERON:0000160!8.12e-08!27;UBERON:0002048!8.15e-08!22;UBERON:0000117!8.15e-08!22;UBERON:0000171!8.15e-08!22;UBERON:0000170!8.15e-08!22;UBERON:0005597!8.15e-08!22;UBERON:0000118!8.15e-08!22;UBERON:0003101!1.13e-07!22;UBERON:0000079!1.13e-07!22;UBERON:0003133!1.35e-07!48;UBERON:0003135!2.06e-07!11;UBERON:0003064!2.34e-07!37;UBERON:0003886!4.30e-07!63;UBERON:0003929!5.27e-07!54;UBERON:0000161!6.85e-07!35;UBERON:0000058!8.78e-07!26 | |ontology_enrichment_uberon=UBERON:0004119!4.10e-33!169;UBERON:0000925!4.10e-33!169;UBERON:0006595!4.10e-33!169;UBERON:0001007!1.60e-29!155;UBERON:0001555!1.60e-29!155;UBERON:0007026!1.60e-29!155;UBERON:0004921!1.83e-28!129;UBERON:0004185!1.83e-28!129;UBERON:0000077!3.02e-24!130;UBERON:0001041!1.84e-19!98;UBERON:0000466!4.38e-18!126;UBERON:0001004!4.55e-17!72;UBERON:0000464!7.13e-16!104;UBERON:0000065!7.16e-16!53;UBERON:0005911!1.38e-14!82;UBERON:0005177!2.69e-14!107;UBERON:0008947!2.97e-14!38;UBERON:0003258!2.97e-14!38;UBERON:0000072!1.99e-12!46;UBERON:0000062!5.08e-12!511;UBERON:0003104!5.44e-10!238;UBERON:0009142!5.44e-10!238;UBERON:0000064!8.09e-10!219;UBERON:0000481!1.35e-09!347;UBERON:0001048!1.61e-09!168;UBERON:0009569!2.07e-09!113;UBERON:0005178!2.78e-09!34;UBERON:0002224!2.78e-09!34;UBERON:0005409!3.53e-09!35;UBERON:0001008!4.24e-09!45;UBERON:0005153!5.88e-09!37;UBERON:0005156!7.93e-09!59;UBERON:0000990!7.93e-09!59;UBERON:0005181!8.33e-09!35;UBERON:0000063!9.37e-09!97;UBERON:0006554!1.08e-08!44;UBERON:0002553!3.83e-08!70;UBERON:0000160!8.12e-08!27;UBERON:0002048!8.15e-08!22;UBERON:0000117!8.15e-08!22;UBERON:0000171!8.15e-08!22;UBERON:0000170!8.15e-08!22;UBERON:0005597!8.15e-08!22;UBERON:0000118!8.15e-08!22;UBERON:0003101!1.13e-07!22;UBERON:0000079!1.13e-07!22;UBERON:0003133!1.35e-07!48;UBERON:0003135!2.06e-07!11;UBERON:0003064!2.34e-07!37;UBERON:0003886!4.30e-07!63;UBERON:0003929!5.27e-07!54;UBERON:0000161!6.85e-07!35;UBERON:0000058!8.78e-07!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.61e-16;33!UBERON:0005409;1.48e-15;22!UBERON:0000160;3.54e-13;17!UBERON:0001555;1.19e-09;54!UBERON:0000059;5.05e-08;11!UBERON:0001007;3.26e-07;81!UBERON:0003124;5.45e-07;3!UBERON:0000920;5.45e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.63e-22,145;UBERON:0001555,1.63e-22,145;UBERON:0007026,1.63e-22,145;UBERON:0004119,6.53e-22,160;UBERON:0000925,6.53e-22,160;UBERON:0006595,6.53e-22,160;UBERON:0004921,4.41e-21,118;UBERON:0005409,1.84e-13,25;UBERON:0000160,2.27e-13,17;UBERON:0001041,2.57e-11,87;UBERON:0001004,4.70e-09,74;UBERON:0005911,5.13e-09,82;UBERON:0005177,1.31e-08,101;UBERON:0000059,3.74e-08,11;UBERON:0008947,1.25e-07,38;UBERON:0003258,1.25e-07,38;UBERON:0009569,4.32e-07,112;UBERON:0000072,4.41e-07,47;UBERON:0000920,6.70e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,4.18680700783456,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0.919421224478927,2.409647350226,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0478326039817,2.18577172975525,3.33705998505986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,1.54608682530637,1.09098448236334,1.14721838155602,0.609868530647977,0.927708378250397,1.04574548582567,1.0366105501537,0.756962552626885,0,0,0,0,0,0,1.65629520055781,0.168584690078102,0.241011029883482,1.10293972732394,1.08939722046203,0.949082476444386,0.539325232640658,1.37355025587742,1.15424147083917,0,0,0,0,0,1.96565443335525,0,0,2.82873408649161,0,0.878002283269004,0,0.703702806881416,0.925884451585296,0,0,0,0,0,0,0,0,2.37061319387782,0,0,0,0,0,0.335964256397719,0.567100388969546,0,0,0.766765358330422,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65890789101569,2.6065841139427,1.47329582297434,0,0,0,2.25599806453706,0.385076685522074,2.35304930753057,0,0.633309773357254,1.13733384070897,0,0,0,0.541892875087706,0,3.05851527654046,3.3243040357149,1.34324852833307,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.9273691048295,0.183138929636687,0,0,0,0,0,0,0,0,0,0,0,0,0.661139661443912,0.384380134730212,0.893288987462089,0.910420027699949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962221127255121,2.01090682660736,2.17781969722645,1.41215701165169,0.43050537267123,1.68471475667626,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0.213648142254946,0,3.92064345569651,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,5.98849729306303,0,0,0,0,2.86493381685228,0.890894042497916,1.53580351049616,0,0,0,0,1.26675244876796,0,1.65770349318689,4.28285671352269,0,0,0,0.539210106883961,1.43216939740487,0,0.493217028184668,0,0,0,0.0927680981618513,0,1.30213880542617,5.85981999974511,0,2.61724931056649,1.5255219017566,4.25497827182285,0.689486746482929,0,0,0,0,0,0,0,0,0.435753854075961,0.697118721393016,0.307801034015188,0,2.99733075704478,1.34636466614658,6.30154757147647,5.10401855571071,2.28993983504656,5.33034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.979396848954886,2.68570835724488,0,5.97157158647103,8.40346862781722,4.27721101453538,0,0,0,0.134802265961354,0,0,0,1.76098157038881,0.242780379534093,2.36750641709634,2.41981432097328,0,0,0.300646838828985,0,0,0,0.313932918407225,0,0.569219092059585,0,0.694238953340524,1.46988596121566,1.65412492502765,0.52418000472609,0,1.25783230675811,0.584714536689484,0.656923656425674,3.10364852762942,0.264768380074501,0.451961481561065,0,0,0.0633107959558787,1.56441106187842,0.480952921509202,5.97668385270187,0.39961921916426,3.60226042885265,0.458146384663663,0.171594997861965,0,0.124252535565433,3.77110455386873,0,0,0,0,0,0,0,0,0,0,0,0,0.998395002494955,0,0,0,0,3.49487848582361,0.709048640765013,1.40106959247983,0.876246070104404,0.196854963029498,0,0,0,0.643012593860077,0.412618309791701,1.24632101408756,0.2249738915515,0,0,1.0063040627978,1.81253126788156,2.98991152369489,0.211200673038813,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0.732761168390412,1.32506888912221,0.129282956361551,0,0.171086837884329,3.52407511158336,0.961086713109252,0.78602152549833,1.24271716604159,0,0,0,2.55336503108073,0,0,0,0,1.09937867375164,0,0,0,0,0.110929051536852,0.18628920882415,0,0.499921631848426,0,0,0,0,1.7390523433299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0.857766365499703,0,0,0.231522474323834,0.244736704506468,0,0.308801447160972,0,0,0,0,0.256241518587947,0.690860683462397,0,0,0,0,0,0,0.245772908753719,0.845248493434508,0,0,0,0,0,1.39879507719444,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,1.57036349601641,0.235939446695481,0.550285795565037,1.27078232765372,0,0,0,0.0752103283492573,0,1.56302802246618,1.83334686136996,0,1.33070477595341,0.0675375846183947,0,0,0,0,1.64477330057155,0.992422356778588,0,1.91643641459393,0,0.336283722218824,0.606965604236632,0.682986574053893,1.24183318227694,0,0,0.271878931907327,0.0657727735628491,0.590969204419841,1.22354542081276,0.78493092850514,0,2.5224494698241,3.65263488203798,0,0,0.0714765441766563,0,0.23248285073625,0,0,0,0,0,1.29068207646083,0,0,2.9637093513365,0.9164274741762,0,0,3.46751838573156,4.41676051268593,1.82876887473404,0,0,0,0.971421986118279,1.40363678077263,0.795803100645473,0.356760272332706,0.5647304101948,0,2.8682940277668,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| ||
|short_description=p2@ARHGEF16 | |short_description=p2@ARHGEF16 | ||
}} | }} |
Latest revision as of 17:00, 17 September 2015
Short description: | p2@ARHGEF16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARHGEF16_5end |
Coexpression cluster: | NA |
Association with transcript: | 13bp_to_NM_014448, uc001akg.3_5end |
EntrezGene: | ARHGEF16 |
HGNC: | 15515 |
UniProt: | B3KTS4Q5VV41 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.49e-19 | 253 |
germ line cell | 1.02e-12 | 7 |
germ cell | 1.02e-12 | 7 |
endodermal cell | 5.74e-10 | 58 |
endo-epithelial cell | 4.74e-09 | 42 |
chorionic membrane mesenchymal stem cell | 6.70e-07 | 3 |
epithelial cell of alimentary canal | 6.83e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
digestive system | 1.63e-22 | 145 |
digestive tract | 1.63e-22 | 145 |
primitive gut | 1.63e-22 | 145 |
endoderm-derived structure | 6.53e-22 | 160 |
endoderm | 6.53e-22 | 160 |
presumptive endoderm | 6.53e-22 | 160 |
subdivision of digestive tract | 4.41e-21 | 118 |
gastrointestinal system | 1.84e-13 | 25 |
intestine | 2.27e-13 | 17 |
foregut | 2.57e-11 | 87 |
respiratory system | 4.70e-09 | 74 |
endo-epithelium | 5.13e-09 | 82 |
trunk region element | 1.31e-08 | 101 |
large intestine | 3.74e-08 | 11 |
respiratory primordium | 1.25e-07 | 38 |
endoderm of foregut | 1.25e-07 | 38 |
subdivision of trunk | 4.32e-07 | 112 |
segment of respiratory tract | 4.41e-07 | 47 |
egg chorion | 6.70e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.76e-23 | 106 |
cell type cancer | 2.01e-17 | 143 |
squamous cell carcinoma | 1.69e-10 | 14 |
cancer | 1.89e-07 | 235 |
disease of cellular proliferation | 4.81e-07 | 239 |