FFCP PHASE1:Hg19::chr17:41277690..41277732,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:41277690..41277732,+
|short_description=p3@NBR2
|description=CAGE_peak_3_at_NBR2_5end
|association_with_transcript=29bp_to_ENST00000467245_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=20691 | |HGNC=20691 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=29bp_to_ENST00000467245_5end | |||
|cluster_id=chr17:41277690..41277732,+ | |||
|description=CAGE_peak_3_at_NBR2_5end | |||
|id=chr17:41277690..41277732,+ | |||
|ontology_enrichment_celltype=CL:0000223!6.00e-08!59;CL:0000066!3.96e-07!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.40e-11,58;CL:0000066,6.30e-10,253 | |||
|ontology_enrichment_development_v019=CL:0000223;3.37e-07;58!UBERON:0001041;6.03e-07;30 | |||
|ontology_enrichment_disease=DOID:14566!5.04e-23!239;DOID:0050687!5.86e-23!143;DOID:162!7.86e-23!235;DOID:305!9.48e-21!106;DOID:0050686!2.67e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:3119;1.52e-08;14!DOID:1749;2.93e-08;14!DOID:305;2.81e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.37e-23,143;DOID:305,2.16e-21,106;DOID:14566,3.56e-21,239;DOID:162,6.21e-21,235;DOID:3119,1.84e-08,14;DOID:1749,3.38e-08,14;DOID:0050686,4.68e-08,137 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.19e-11!169;UBERON:0000925!4.19e-11!169;UBERON:0006595!4.19e-11!169;UBERON:0004921!4.47e-10!129;UBERON:0004185!4.47e-10!129;UBERON:0001007!2.23e-09!155;UBERON:0001555!2.23e-09!155;UBERON:0007026!2.23e-09!155;UBERON:0005409!2.34e-09!35;UBERON:0000160!1.51e-08!27;UBERON:0000077!4.22e-08!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;9.76e-09;22!UBERON:0002423;6.64e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.80e-08,160;UBERON:0000925,2.80e-08,160;UBERON:0006595,2.80e-08,160;UBERON:0005911,8.54e-08,82;UBERON:0004921,2.86e-07,118;UBERON:0009854,3.00e-07,23;UBERON:0009497,3.05e-07,25;UBERON:0000015,3.05e-07,25;UBERON:0002423,3.05e-07,25;UBERON:0006235,3.05e-07,25;UBERON:0004161,3.05e-07,25;UBERON:0005409,3.67e-07,25;UBERON:0003929,6.03e-07,54;UBERON:0001007,6.69e-07,145;UBERON:0001555,6.69e-07,145;UBERON:0007026,6.69e-07,145;UBERON:0008835,7.13e-07,22;UBERON:0003894,7.13e-07,22 | |||
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| ||
|short_description=p3@NBR2 | |||
}} | }} |
Latest revision as of 17:33, 24 September 2015
Short description: | p3@NBR2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NBR2_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_ENST00000467245_5end |
EntrezGene: | NA |
HGNC: | 20691 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.40e-11 | 58 |
epithelial cell | 6.30e-10 | 253 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.80e-08 | 160 |
endoderm | 2.80e-08 | 160 |
presumptive endoderm | 2.80e-08 | 160 |
endo-epithelium | 8.54e-08 | 82 |
subdivision of digestive tract | 2.86e-07 | 118 |
digestive tract diverticulum | 3.00e-07 | 23 |
epithelium of foregut-midgut junction | 3.05e-07 | 25 |
anatomical boundary | 3.05e-07 | 25 |
hepatobiliary system | 3.05e-07 | 25 |
foregut-midgut junction | 3.05e-07 | 25 |
septum transversum | 3.05e-07 | 25 |
gastrointestinal system | 3.67e-07 | 25 |
gut epithelium | 6.03e-07 | 54 |
digestive system | 6.69e-07 | 145 |
digestive tract | 6.69e-07 | 145 |
primitive gut | 6.69e-07 | 145 |
hepatic diverticulum | 7.13e-07 | 22 |
liver primordium | 7.13e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.37e-23 | 143 |
carcinoma | 2.16e-21 | 106 |
disease of cellular proliferation | 3.56e-21 | 239 |
cancer | 6.21e-21 | 235 |
gastrointestinal system cancer | 1.84e-08 | 14 |
squamous cell carcinoma | 3.38e-08 | 14 |
organ system cancer | 4.68e-08 | 137 |