FFCP PHASE1:Hg19::chr20:25228962..25228987,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5834 | |EntrezGene=5834 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9723 | |HGNC=9723 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=147bp_to_DQ894674,EU176283_5end | |association_with_transcript=147bp_to_DQ894674,EU176283_5end | ||
|cluster_id=chr20:25228962..25228987,+ | |||
|description=CAGE_peak_2_at_PYGB_5end | |description=CAGE_peak_2_at_PYGB_5end | ||
|id=chr20:25228962..25228987,+ | |id=chr20:25228962..25228987,+ | ||
|ontology_enrichment_celltype=CL:0000220!5.72e-15!246;CL:0002321!1.70e-14!248;CL:0000055!7.77e-14!180;CL:0000222!3.35e-13!119;CL:0000183!4.45e-10!59;CL:0000680!2.91e-09!57;CL:0000056!2.91e-09!57;CL:0000355!2.91e-09!57;CL:0000192!2.31e-08!42;CL:0000514!2.31e-08!42;CL:0000187!2.44e-08!54;CL:0000359!8.89e-08!32;CL:0000393!1.78e-07!60;CL:0000211!1.78e-07!60;CL:0000144!4.85e-07!625;CL:0002371!5.07e-07!591;CL:0000057!8.68e-07!75 | |ontology_enrichment_celltype=CL:0000220!5.72e-15!246;CL:0002321!1.70e-14!248;CL:0000055!7.77e-14!180;CL:0000222!3.35e-13!119;CL:0000183!4.45e-10!59;CL:0000680!2.91e-09!57;CL:0000056!2.91e-09!57;CL:0000355!2.91e-09!57;CL:0000192!2.31e-08!42;CL:0000514!2.31e-08!42;CL:0000187!2.44e-08!54;CL:0000359!8.89e-08!32;CL:0000393!1.78e-07!60;CL:0000211!1.78e-07!60;CL:0000144!4.85e-07!625;CL:0002371!5.07e-07!591;CL:0000057!8.68e-07!75 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.21e-13,250;CL:0000222,2.24e-12,121;CL:0000680,2.06e-07,58;CL:0000056,2.06e-07,58;CL:0000355,2.06e-07,58;CL:0000359,8.51e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.88e-15!312;UBERON:0002049!6.65e-15!79;UBERON:0007798!6.65e-15!79;UBERON:0000483!1.28e-14!309;UBERON:0003914!5.21e-13!118;UBERON:0000475!9.47e-12!365;UBERON:0000481!3.05e-11!347;UBERON:0004535!4.23e-11!110;UBERON:0001009!4.38e-11!113;UBERON:0000468!9.62e-11!659;UBERON:0000490!1.09e-10!138;UBERON:0000467!1.82e-10!625;UBERON:0001981!1.85e-10!60;UBERON:0007500!1.85e-10!60;UBERON:0004537!1.85e-10!60;UBERON:0006965!1.85e-10!60;UBERON:0000480!1.90e-10!626;UBERON:0000055!2.18e-10!69;UBERON:0004872!3.02e-10!84;UBERON:0005256!3.39e-10!143;UBERON:0001637!6.40e-10!42;UBERON:0003509!6.40e-10!42;UBERON:0004572!6.40e-10!42;UBERON:0000477!1.32e-09!286;UBERON:0000923!4.73e-09!604;UBERON:0005291!4.73e-09!604;UBERON:0006598!4.73e-09!604;UBERON:0002532!4.73e-09!604;UBERON:0002050!5.77e-09!605;UBERON:0005423!5.77e-09!605;UBERON:0000914!1.04e-08!83;UBERON:0002329!1.04e-08!83;UBERON:0003077!1.04e-08!83;UBERON:0003059!1.04e-08!83;UBERON:0007282!1.04e-08!83;UBERON:0009618!1.04e-08!83;UBERON:0007285!1.04e-08!83;UBERON:0004573!1.56e-08!33;UBERON:0004571!1.56e-08!33;UBERON:0004111!2.32e-08!241;UBERON:0000922!2.32e-08!612;UBERON:0002385!2.34e-08!63;UBERON:0001015!2.34e-08!63;UBERON:0000383!2.34e-08!63;UBERON:0001134!2.91e-08!61;UBERON:0002036!2.91e-08!61;UBERON:0003082!2.91e-08!61;UBERON:0002100!3.25e-08!216;UBERON:0004290!3.32e-08!70;UBERON:0000025!4.66e-08!194;UBERON:0000486!4.25e-07!82 | |ontology_enrichment_uberon=UBERON:0000119!1.88e-15!312;UBERON:0002049!6.65e-15!79;UBERON:0007798!6.65e-15!79;UBERON:0000483!1.28e-14!309;UBERON:0003914!5.21e-13!118;UBERON:0000475!9.47e-12!365;UBERON:0000481!3.05e-11!347;UBERON:0004535!4.23e-11!110;UBERON:0001009!4.38e-11!113;UBERON:0000468!9.62e-11!659;UBERON:0000490!1.09e-10!138;UBERON:0000467!1.82e-10!625;UBERON:0001981!1.85e-10!60;UBERON:0007500!1.85e-10!60;UBERON:0004537!1.85e-10!60;UBERON:0006965!1.85e-10!60;UBERON:0000480!1.90e-10!626;UBERON:0000055!2.18e-10!69;UBERON:0004872!3.02e-10!84;UBERON:0005256!3.39e-10!143;UBERON:0001637!6.40e-10!42;UBERON:0003509!6.40e-10!42;UBERON:0004572!6.40e-10!42;UBERON:0000477!1.32e-09!286;UBERON:0000923!4.73e-09!604;UBERON:0005291!4.73e-09!604;UBERON:0006598!4.73e-09!604;UBERON:0002532!4.73e-09!604;UBERON:0002050!5.77e-09!605;UBERON:0005423!5.77e-09!605;UBERON:0000914!1.04e-08!83;UBERON:0002329!1.04e-08!83;UBERON:0003077!1.04e-08!83;UBERON:0003059!1.04e-08!83;UBERON:0007282!1.04e-08!83;UBERON:0009618!1.04e-08!83;UBERON:0007285!1.04e-08!83;UBERON:0004573!1.56e-08!33;UBERON:0004571!1.56e-08!33;UBERON:0004111!2.32e-08!241;UBERON:0000922!2.32e-08!612;UBERON:0002385!2.34e-08!63;UBERON:0001015!2.34e-08!63;UBERON:0000383!2.34e-08!63;UBERON:0001134!2.91e-08!61;UBERON:0002036!2.91e-08!61;UBERON:0003082!2.91e-08!61;UBERON:0002100!3.25e-08!216;UBERON:0004290!3.32e-08!70;UBERON:0000025!4.66e-08!194;UBERON:0000486!4.25e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.74e-07;42!UBERON:0003509;1.74e-07;42!UBERON:0004572;1.74e-07;42!UBERON:0006876;5.52e-07;11!UBERON:0007500;8.38e-07;56!UBERON:0001981;8.38e-07;56!UBERON:0004537;8.38e-07;56!UBERON:0003914;9.44e-07;74 | |||
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| ||
|short_description=p2@PYGB | |short_description=p2@PYGB | ||
}} | }} |
Latest revision as of 22:45, 24 September 2015
Short description: | p2@PYGB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PYGB_5end |
Coexpression cluster: | NA |
Association with transcript: | 147bp_to_DQ894674, EU176283_5end |
EntrezGene: | PYGB |
HGNC: | 9723 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.21e-13 | 250 |
mesodermal cell | 2.24e-12 | 121 |
muscle precursor cell | 2.06e-07 | 58 |
myoblast | 2.06e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.06e-07 | 58 |
vascular associated smooth muscle cell | 8.51e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.28e-15 | 309 |
vasculature | 1.09e-14 | 78 |
vascular system | 1.09e-14 | 78 |
epithelium | 1.19e-14 | 306 |
epithelial tube | 2.52e-13 | 117 |
cardiovascular system | 1.66e-11 | 109 |
circulatory system | 4.35e-11 | 112 |
epithelial tube open at both ends | 1.62e-10 | 59 |
blood vessel | 1.62e-10 | 59 |
blood vasculature | 1.62e-10 | 59 |
vascular cord | 1.62e-10 | 59 |
splanchnic layer of lateral plate mesoderm | 5.68e-10 | 83 |
unilaminar epithelium | 1.07e-09 | 148 |
vessel | 1.27e-09 | 68 |
artery | 5.16e-09 | 42 |
arterial blood vessel | 5.16e-09 | 42 |
arterial system | 5.16e-09 | 42 |
mesenchyme | 2.24e-08 | 160 |
entire embryonic mesenchyme | 2.24e-08 | 160 |
epithelial vesicle | 2.85e-08 | 78 |
tube | 5.76e-08 | 192 |
anatomical conduit | 6.07e-08 | 240 |
anterior segment of eyeball | 2.65e-07 | 14 |
vasculature of organ | 2.91e-07 | 11 |
trunk mesenchyme | 3.56e-07 | 122 |
dense mesenchyme tissue | 6.06e-07 | 73 |
systemic artery | 7.53e-07 | 33 |
systemic arterial system | 7.53e-07 | 33 |
muscle tissue | 8.65e-07 | 64 |
musculature | 8.65e-07 | 64 |
musculature of body | 8.65e-07 | 64 |