FFCP PHASE1:Hg19::chr17:7760961..7760972,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:7760961..7760972,-
|short_description=p4@LSMD1
|description=CAGE_peak_4_at_LSMD1_5end
|association_with_transcript=-81bp_to_uc002giz.2_5end
|EntrezGene=8...") |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84316 | |EntrezGene=84316 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28212 | |HGNC=28212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-81bp_to_uc002giz.2_5end | |||
|cluster_id=chr17:7760961..7760972,- | |||
|description=CAGE_peak_4_at_LSMD1_5end | |||
|id=chr17:7760961..7760972,- | |||
|ontology_enrichment_celltype=CL:0000860!2.84e-08!45;CL:0002057!4.70e-08!42;CL:0000766!6.89e-08!76;CL:0000738!2.61e-07!140;CL:0000763!5.39e-07!112;CL:0000049!5.39e-07!112;CL:0000037!5.58e-07!172;CL:0000566!5.58e-07!172;CL:0000988!9.30e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000576;5.27e-12;48!CL:0002393;1.38e-11;6!CL:0002397;1.38e-11;6!CL:0000766;2.17e-10;69!CL:0000094;2.73e-10;8!CL:0000860;3.32e-09;33!CL:0002057;3.32e-09;33!CL:0000875;8.62e-08;3!CL:0002396;8.62e-08;3!CL:0000081;3.31e-07;11!CL:0000473;3.75e-07;39!CL:0000234;3.75e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.87e-21,42;CL:0002057,4.87e-21,42;CL:0000473,3.93e-19,48;CL:0000234,3.93e-19,48;CL:0000766,1.95e-18,72;CL:0002393,3.49e-17,9;CL:0002397,3.49e-17,9;CL:0002194,6.57e-14,59;CL:0000576,6.57e-14,59;CL:0000040,6.57e-14,59;CL:0000559,6.57e-14,59;CL:0002009,3.05e-13,61;CL:0000763,4.14e-13,108;CL:0000049,4.14e-13,108;CL:0000557,1.28e-12,67;CL:0000738,6.61e-12,136;CL:0000839,9.34e-12,66;CL:0002032,2.36e-11,161;CL:0000837,2.36e-11,161;CL:0000037,1.96e-10,168;CL:0000094,2.68e-10,8;CL:0002087,1.12e-09,115;CL:0000988,2.27e-09,177;CL:0002031,6.11e-09,120;CL:0000875,9.26e-08,3;CL:0002396,9.26e-08,3;CL:0000081,3.26e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;7.12e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.84e-09!112;UBERON:0002390!7.48e-09!102;UBERON:0003061!7.48e-09!102;UBERON:0003081!1.38e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.25e-12;9!UBERON:0001557;1.25e-12;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.48e-13,9;UBERON:0002390,7.29e-13,98;UBERON:0003061,7.29e-13,98;UBERON:0002193,7.39e-12,108;UBERON:0003081,1.10e-11,203;UBERON:0002371,2.55e-11,76;UBERON:0001474,5.30e-10,82;UBERON:0004765,1.74e-09,90;UBERON:0002405,6.33e-09,93;UBERON:0001557,2.17e-08,19;UBERON:0001434,7.15e-08,100 | |||
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|phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0.872338524100369,0,0,0.261185628199839,0.491467873003018,4.18680700783456,0.655324116390517,0.263766978228454,0.247532705920093,0.331397375727916,0.672325146451775,0.602694528023977,0,0,0.123121058076788,0.408001382488506,0,0.286235987131057,0.410623275218653,0.251085279189606,0.305653622991805,0.410502947249729,0.314843125254717,4.32700704533794,2.68680578668049,0.464448369948228,1.83884244895785,0.90361775633475,0,0.542270404062111,0,0.587200878669695,1.10799081706375,1.00272223735071,1.08505435357926,0,0.647787332037959,0.515151135268373,1.30858414901608,1.13362783106643,2.18325655069035,0.464858073811369,0,0.619412741790207,0.863077176966451,1.0246428261164,1.41889337933151,0,0,0,0.564727018627814,1.09162460023138,0.898893937780338,0,1.28371610830437,0,1.64925650093358,1.19678194572979,0,1.16083695451434,1.70215567407342,0,0,0,0.65156653411535,0.605399502633369,0.736555271975129,2.21523671208619,2.74631872205524,1.4882300997553,1.67726916406701,3.93150209012733,1.95229960693958,1.44653028027372,3.42015292489498,3.38158351238453,2.19196984517561,0,0,1.77901850772711,0,0,0.574752439954483,1.32208974556972,1.90810750907073,1.1384259382189,0.587237189370939,0,0,0,0.263384084775077,0.393419540227666,0.393010762749165,0.205601498999509,0.501559486172034,0.651844533267181,0,0,0.445641827540694,0,0,0,0.25618263945135,0.130059347559878,0.986627427622057,0.552700035571697,0.289803085735052,0.593146252648242,0.535081656179426,0,0.113309342697566,0.766440987203842,0.34362744548263,0.253019692019503,0.637130828648193,1.95325036156926,2.85135613334512,0.301150238155546,0.383959833463255,1.24930726552346,0.236777252044017,0,0.201606743224732,0.267440195783507,0.434473211648397,0,0.670700859703636,0.383587685530591,0.722878304769133,0,0.434539556882471,0,0.973269740605272,0.0945348171640679,0.665188192387692,0,0.327447688744282,0.364295288292542,0,0.324547393654683,0.522389211897802,0.26591592103773,0,0,0,0.198762407366705,1.72046919021225,0.694281003215189,1.13061588384802,0.838998872419812,0.550236083880135,0.417989933073621,0.516833518338658,0.35576626268671,0,1.20848795132744,0,0.24406205754817,0.367663080345869,0,0,0.44905874525234,0.112611480483322,0,1.89853131913626,0.366403487860815,9.22462922052443,7.75560528296651,0,0,0.25326102332916,0,0,0.354668382198357,0,0,0.24666754841716,0.311211035399766,0.269421344139376,0.163461903113459,0.302714855289863,0,0,0,0,0.298897361103602,0,0.485618833104395,0.140450806702248,0.204154171254893,0.245668634623536,0,0,0,1.82032272387605,0.718618141816238,0.168336113954066,0.125118519871964,0.277064115484183,0.438977620880838,0,0,1.02088964844019,0,0.427114777637135,0,0.300091096084402,0.309157587715317,0,0.18611685633159,0.337552664482532,0,0,0.276149695926898,0.323292113637624,0,0.10075209822764,0.169560592310488,2.12586938479627,0.545492241181669,0,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0.643240938192885,0,0,1.44375896333917,1.41968160047813,1.34867752062481,1.20505514941741,1.7647035637183,1.52515610864684,1.66089433377768,1.48314438976181,1.76599318612811,0.38474715694639,0.738155454624648,0,0,0,0,1.96565443335525,0,0.441463099414651,0.122988438543114,0,0.329250856225877,0,0.301586917234893,0.185176890317059,0.325808305310325,1.03993478527958,0,0.115930404975077,0.352226082707465,0,0.925971025153221,0.380508304469197,1.58040879591855,0,0.246217006087397,0.702012795417713,1.0404181360211,2.81201501960331,0.671928512795438,0.425325291727159,0.179117045405697,0,1.91691339582606,0.492663237895943,0.088048434013226,0.414656231081544,0.144119953416961,0.25248486685276,0.190493682876507,0.381988425558278,1.17217447210047,0,0.102827492703324,0,0.285826432630578,0,0,0.2933531432838,0.129271715757778,3.57656445851882,0,0,0,0,0,0,0.57191197463259,1.08524321078289,3.29296134712308,0,0,0,0.602878754119172,0.871533458600294,0.399891964728228,0,0,0,0.239624855491583,0,0,0,0,0.179060963239896,0.336255431980582,0.197030760201927,0,0.256686072559497,0.254094624222463,0,0,0,0,2.24702107184155,0,2.48649308061621,0,0.500170521059677,0.271265023699736,0.415941723061614,0.178428988797162,0.315404830067869,0.234282829985426,0,4.5481500811197,3.10419213877515,1.32845119707087,0.184369168541703,0.0868836144680828,0.587403472388222,0,0.82707210449155,0.647142602455851,0.74709290462411,2.12189300012382,0,0,0.248107807818777,0.153461973288062,0.280660094433074,0.256278298511402,0.511707249066704,0.321707842287215,0,0.925258162815933,0,0.821271560138091,0,0.813472649219715,0.120859449591622,0.40101294060657,0.184161977871793,0.803701137152247,0.728364672026868,0.131124414959424,0.451199612907412,0.231046011313244,0.784349769176855,1.46139224653261,0.211103257785751,0,1.02056223165909,0.863663664408557,0,0,0.501689773854853,0.509752546090077,0,0,0.438519753291869,0.784306353074702,0.256450125116389,0,0.325378394664303,0.309123034943167,0.366277859273374,0.165018999841176,0,0,1.6068392984416,0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| ||
|short_description=p4@LSMD1 | |||
}} | }} |
Latest revision as of 02:14, 18 September 2015
Short description: | p4@LSMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LSMD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -81bp_to_uc002giz.2_5end |
EntrezGene: | LSMD1 |
HGNC: | 28212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.87e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.87e-21 | 42 |
defensive cell | 3.93e-19 | 48 |
phagocyte | 3.93e-19 | 48 |
myeloid leukocyte | 1.95e-18 | 72 |
intermediate monocyte | 3.49e-17 | 9 |
CD14-positive, CD16-positive monocyte | 3.49e-17 | 9 |
monopoietic cell | 6.57e-14 | 59 |
monocyte | 6.57e-14 | 59 |
monoblast | 6.57e-14 | 59 |
promonocyte | 6.57e-14 | 59 |
macrophage dendritic cell progenitor | 3.05e-13 | 61 |
myeloid cell | 4.14e-13 | 108 |
common myeloid progenitor | 4.14e-13 | 108 |
granulocyte monocyte progenitor cell | 1.28e-12 | 67 |
leukocyte | 6.61e-12 | 136 |
myeloid lineage restricted progenitor cell | 9.34e-12 | 66 |
hematopoietic oligopotent progenitor cell | 2.36e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.36e-11 | 161 |
hematopoietic stem cell | 1.96e-10 | 168 |
granulocyte | 2.68e-10 | 8 |
nongranular leukocyte | 1.12e-09 | 115 |
hematopoietic cell | 2.27e-09 | 177 |
hematopoietic lineage restricted progenitor cell | 6.11e-09 | 120 |
non-classical monocyte | 9.26e-08 | 3 |
CD14-low, CD16-positive monocyte | 9.26e-08 | 3 |
blood cell | 3.26e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
larynx | 2.48e-13 | 9 |
hematopoietic system | 7.29e-13 | 98 |
blood island | 7.29e-13 | 98 |
hemolymphoid system | 7.39e-12 | 108 |
lateral plate mesoderm | 1.10e-11 | 203 |
bone marrow | 2.55e-11 | 76 |
bone element | 5.30e-10 | 82 |
skeletal element | 1.74e-09 | 90 |
immune system | 6.33e-09 | 93 |
upper respiratory tract | 2.17e-08 | 19 |
skeletal system | 7.15e-08 | 100 |