FFCP PHASE1:Hg19::chr14:57268994..57269015,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr14:57268994..57269015,+ | |||
|coexpression_cluster_id=C535 | |coexpression_cluster_id=C535 | ||
|description=CAGE_peak_at_chr14:57268994..57269015,+ | |description=CAGE_peak_at_chr14:57268994..57269015,+ | ||
|id=chr14:57268994..57269015,+ | |id=chr14:57268994..57269015,+ | ||
|ontology_enrichment_celltype=CL:0002322!2.09e-24!5;CL:0000540!1.31e-20!6;CL:0000031!1.31e-20!6;CL:0000404!1.31e-20!6;CL:0000047!1.60e-15!8;CL:0002319!6.22e-10!25;CL:0000147!6.16e-09!14;CL:0000133!7.12e-09!59;CL:0000148!2.45e-07!10;CL:0000541!2.45e-07!10;CL:0000221!3.40e-07!71 | |ontology_enrichment_celltype=CL:0002322!2.09e-24!5;CL:0000540!1.31e-20!6;CL:0000031!1.31e-20!6;CL:0000404!1.31e-20!6;CL:0000047!1.60e-15!8;CL:0002319!6.22e-10!25;CL:0000147!6.16e-09!14;CL:0000133!7.12e-09!59;CL:0000148!2.45e-07!10;CL:0000541!2.45e-07!10;CL:0000221!3.40e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0002586;1.67e-09;3!CL:0000149;1.92e-07;4!CL:0000243;7.32e-07;15!CL:0000125;7.32e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.67e-09,3;CL:0000149,1.92e-07,4;CL:0000243,7.21e-07,15;CL:0000125,7.21e-07,15;CL:0000030,7.21e-07,15;CL:0000339,7.21e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006238;4.12e-10;10!UBERON:0003056;1.14e-09;3!CL:0000339;7.32e-07;15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;9.22e-11;22!DOID:2994;9.22e-11;22!DOID:3093;2.39e-09;11!DOID:5409;1.44e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,9.38e-11,22;DOID:2994,9.38e-11,22;DOID:3093,2.35e-09,11;DOID:5409,1.49e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000966!9.14e-15!5;UBERON:0005388!9.14e-15!5;UBERON:0001802!9.14e-15!5;UBERON:0005743!1.77e-14!86;UBERON:0000073!6.73e-13!94;UBERON:0001016!6.73e-13!94;UBERON:0001896!4.66e-11!3;UBERON:0005290!4.66e-11!3;UBERON:0010096!4.66e-11!3;UBERON:0001017!5.46e-11!82;UBERON:0002336!1.07e-08!1;UBERON:0001018!1.07e-08!1;UBERON:0002473!1.07e-08!1;UBERON:0005340!1.07e-08!1;UBERON:0002316!1.07e-08!1;UBERON:0003544!1.07e-08!1;UBERON:0001020!1.07e-08!1;UBERON:0005970!1.07e-08!1;UBERON:0002437!1.07e-08!1;UBERON:0000924!4.76e-07!173;UBERON:0006601!4.76e-07!173;UBERON:0002346!8.35e-07!90 | |ontology_enrichment_uberon=UBERON:0000966!9.14e-15!5;UBERON:0005388!9.14e-15!5;UBERON:0001802!9.14e-15!5;UBERON:0005743!1.77e-14!86;UBERON:0000073!6.73e-13!94;UBERON:0001016!6.73e-13!94;UBERON:0001896!4.66e-11!3;UBERON:0005290!4.66e-11!3;UBERON:0010096!4.66e-11!3;UBERON:0001017!5.46e-11!82;UBERON:0002336!1.07e-08!1;UBERON:0001018!1.07e-08!1;UBERON:0002473!1.07e-08!1;UBERON:0005340!1.07e-08!1;UBERON:0002316!1.07e-08!1;UBERON:0003544!1.07e-08!1;UBERON:0001020!1.07e-08!1;UBERON:0005970!1.07e-08!1;UBERON:0002437!1.07e-08!1;UBERON:0000924!4.76e-07!173;UBERON:0006601!4.76e-07!173;UBERON:0002346!8.35e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;9.44e-21;5!UBERON:0005388;9.44e-21;5!UBERON:0001802;9.44e-21;5!UBERON:0000970;7.68e-12;20!UBERON:0002104;2.61e-11;21!UBERON:0000020;2.19e-10;23!UBERON:0001032;5.57e-10;24!UBERON:0004456;5.57e-10;24!UBERON:0001781;1.67e-09;3!UBERON:0001782;1.67e-09;3!UBERON:0002346;1.92e-07;4!UBERON:0000923;1.92e-07;4!UBERON:0010316;1.92e-07;4!UBERON:0005291;1.92e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.71e-17,6;UBERON:0005388,1.71e-17,6;UBERON:0001802,1.71e-17,6;UBERON:0000970,2.52e-11,21;UBERON:0002104,2.52e-11,21;UBERON:0000020,5.40e-10,24;UBERON:0001032,5.40e-10,24;UBERON:0004456,5.40e-10,24;UBERON:0001782,1.67e-09,3;UBERON:0005424,1.67e-09,3;UBERON:0001781,1.92e-07,4 | |||
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|short_description=p@chr14:57268994..57269015,+ | |short_description=p@chr14:57268994..57269015,+ | ||
}} | }} |
Latest revision as of 21:22, 24 July 2015
Short description: | p@chr14:57268994..57269015, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr14:57268994..57269015, + |
Coexpression cluster: | C535_medulloblastoma_small_pineal_retinoblastoma_eye_Retinal_retina |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.67e-09 | 3 |
visual pigment cell | 1.92e-07 | 4 |
glial cell (sensu Vertebrata) | 7.21e-07 | 15 |
glial cell | 7.21e-07 | 15 |
glioblast | 7.21e-07 | 15 |
glioblast (sensu Vertebrata) | 7.21e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
retina | 1.71e-17 | 6 |
photoreceptor array | 1.71e-17 | 6 |
posterior segment of eyeball | 1.71e-17 | 6 |
eye | 2.52e-11 | 21 |
visual system | 2.52e-11 | 21 |
sense organ | 5.40e-10 | 24 |
sensory system | 5.40e-10 | 24 |
entire sense organ system | 5.40e-10 | 24 |
pigmented layer of retina | 1.67e-09 | 3 |
presumptive retinal pigmented epithelium | 1.67e-09 | 3 |
layer of retina | 1.92e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 9.38e-11 | 22 |
germ cell cancer | 9.38e-11 | 22 |
nervous system cancer | 2.35e-09 | 11 |
lung small cell carcinoma | 1.49e-07 | 4 |