FFCP PHASE1:Hg19::chr18:45456800..45456886,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:45456800..45456886,-
|short_description=p4@SMAD2
|description=CAGE_peak_4_at_SMAD2_5end
|association_with_transcript=39bp_to_NM_005901,uc002lcy.2_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4087 | |EntrezGene=4087 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6768 | |HGNC=6768 | ||
|TSSclassifier=strong | |||
|UniProt=Q15796,Q53XR6 | |UniProt=Q15796,Q53XR6 | ||
|association_with_transcript=39bp_to_NM_005901,uc002lcy.2_5end | |||
|cluster_id=chr18:45456800..45456886,- | |||
|description=CAGE_peak_4_at_SMAD2_5end | |||
|id=chr18:45456800..45456886,- | |||
|ontology_enrichment_celltype=CL:0000557!1.09e-12!71;CL:0002194!2.30e-12!63;CL:0000576!2.30e-12!63;CL:0000040!2.30e-12!63;CL:0000559!2.30e-12!63;CL:0000839!1.03e-11!70;CL:0002009!2.42e-11!65;CL:0000766!2.79e-11!76;CL:0000860!2.88e-08!45;CL:0000763!5.30e-08!112;CL:0000049!5.30e-08!112;CL:0000738!1.04e-07!140;CL:0002087!1.08e-07!119;CL:0002057!4.29e-07!42;CL:0002031!4.59e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.57e-08;39!CL:0000234;1.57e-08;39!CL:0000860;1.73e-07;33!CL:0002057;1.73e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,1.14e-11,67;CL:0002194,2.79e-11,59;CL:0000576,2.79e-11,59;CL:0000040,2.79e-11,59;CL:0000559,2.79e-11,59;CL:0000839,1.04e-10,66;CL:0000766,2.39e-10,72;CL:0002009,2.44e-10,61;CL:0000473,1.96e-09,48;CL:0000234,1.96e-09,48;CL:0000763,2.45e-07,108;CL:0000049,2.45e-07,108;CL:0000860,4.33e-07,42;CL:0002057,4.33e-07,42;CL:0000738,5.46e-07,136;CL:0002087,7.48e-07,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!3.00e-10!112;UBERON:0002390!6.54e-10!102;UBERON:0003061!6.54e-10!102;UBERON:0002371!7.40e-10!80;UBERON:0001474!2.36e-09!86;UBERON:0004765!1.21e-08!101;UBERON:0001434!1.21e-08!101;UBERON:0002405!8.61e-08!115;UBERON:0000926!4.78e-07!448;UBERON:0004120!4.78e-07!448;UBERON:0006603!4.78e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,1.23e-10,93;UBERON:0002193,2.06e-09,108;UBERON:0002390,4.96e-09,98;UBERON:0003061,4.96e-09,98;UBERON:0002371,6.85e-09,76;UBERON:0004765,1.85e-08,90;UBERON:0001474,2.02e-08,82;UBERON:0001434,7.06e-08,100 | |||
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| ||
|short_description=p4@SMAD2 | |||
}} | }} |
Latest revision as of 16:01, 19 September 2015
Short description: | p4@SMAD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SMAD2_5end |
Coexpression cluster: | NA |
Association with transcript: | 39bp_to_NM_005901, uc002lcy.2_5end |
EntrezGene: | SMAD2 |
HGNC: | 6768 |
UniProt: | Q15796Q53XR6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 1.14e-11 | 67 |
monopoietic cell | 2.79e-11 | 59 |
monocyte | 2.79e-11 | 59 |
monoblast | 2.79e-11 | 59 |
promonocyte | 2.79e-11 | 59 |
myeloid lineage restricted progenitor cell | 1.04e-10 | 66 |
myeloid leukocyte | 2.39e-10 | 72 |
macrophage dendritic cell progenitor | 2.44e-10 | 61 |
defensive cell | 1.96e-09 | 48 |
phagocyte | 1.96e-09 | 48 |
myeloid cell | 2.45e-07 | 108 |
common myeloid progenitor | 2.45e-07 | 108 |
classical monocyte | 4.33e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.33e-07 | 42 |
leukocyte | 5.46e-07 | 136 |
nongranular leukocyte | 7.48e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
immune system | 1.23e-10 | 93 |
hemolymphoid system | 2.06e-09 | 108 |
hematopoietic system | 4.96e-09 | 98 |
blood island | 4.96e-09 | 98 |
bone marrow | 6.85e-09 | 76 |
skeletal element | 1.85e-08 | 90 |
bone element | 2.02e-08 | 82 |
skeletal system | 7.06e-08 | 100 |