FFCP PHASE1:Hg19::chr1:200004156..200004159,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:200004156..200004159,+ | |||
|coexpression_cluster_id=C157 | |coexpression_cluster_id=C157 | ||
|description=CAGE_peak_at_chr1:200004156..200004159,+ | |description=CAGE_peak_at_chr1:200004156..200004159,+ | ||
|id=chr1:200004156..200004159,+ | |id=chr1:200004156..200004159,+ | ||
|ontology_enrichment_celltype=CL:0000039!8.75e-19!7;CL:0000586!8.75e-19!7;CL:0000342!2.35e-09!1;CL:0002565!2.35e-09!1 | |ontology_enrichment_celltype=CL:0000039!8.75e-19!7;CL:0000586!8.75e-19!7;CL:0000342!2.35e-09!1;CL:0002565!2.35e-09!1 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.14e-23;7!CL:0000586;1.14e-23;7!CL:0000214;1.60e-14;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.02e-23,7;CL:0000586,1.02e-23,7;CL:0000214,1.83e-14,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.39e-17;10!UBERON:0005564;6.39e-17;10 | |||
|ontology_enrichment_disease=DOID:3095!5.00e-09!22;DOID:2994!5.00e-09!22 | |ontology_enrichment_disease=DOID:3095!5.00e-09!22;DOID:2994!5.00e-09!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;2.93e-08;22!DOID:2994;2.93e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.82e-08,22;DOID:2994,2.82e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.82e-16!8;UBERON:0000160!2.06e-13!27;UBERON:0005409!2.34e-13!35;UBERON:0003135!4.96e-12!11;UBERON:0002506!2.35e-09!1;UBERON:0001769!2.35e-09!1;UBERON:0002108!8.45e-09!14;UBERON:0001155!9.55e-09!9;UBERON:0004458!2.15e-07!49;UBERON:0000059!3.08e-07!11 | |ontology_enrichment_uberon=UBERON:0000473!1.82e-16!8;UBERON:0000160!2.06e-13!27;UBERON:0005409!2.34e-13!35;UBERON:0003135!4.96e-12!11;UBERON:0002506!2.35e-09!1;UBERON:0001769!2.35e-09!1;UBERON:0002108!8.45e-09!14;UBERON:0001155!9.55e-09!9;UBERON:0004458!2.15e-07!49;UBERON:0000059!3.08e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.35e-21;8!UBERON:0003135;1.74e-15;11!UBERON:0006915;1.60e-14;3!UBERON:0007616;1.60e-14;3!UBERON:0002217;1.60e-14;3!UBERON:0002018;1.60e-14;3!UBERON:0004458;1.14e-10;48!UBERON:0000991;1.32e-08;21!UBERON:0002323;1.37e-08;45!UBERON:0003101;2.93e-08;22!UBERON:0000079;2.93e-08;22!UBERON:0001871;6.39e-07;6!UBERON:0000922;8.59e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.64e-21,8;UBERON:0003135,1.62e-15,11;UBERON:0006915,1.83e-14,3;UBERON:0007616,1.83e-14,3;UBERON:0002217,1.83e-14,3;UBERON:0002018,1.83e-14,3;UBERON:0004458,1.22e-13,49;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0002323,1.36e-08,46;UBERON:0004176,2.82e-08,22;UBERON:0003101,2.82e-08,22;UBERON:0000079,2.82e-08,22;UBERON:0003886,1.99e-07,54;UBERON:0001871,6.39e-07,6 | |||
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|short_description=p@chr1:200004156..200004159,+ | |short_description=p@chr1:200004156..200004159,+ | ||
}} | }} |
Latest revision as of 02:00, 28 July 2015
Short description: | p@chr1:200004156..200004159, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:200004156..200004159, + |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.02e-23 | 7 |
germ cell | 1.02e-23 | 7 |
synovial cell | 1.83e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 6.64e-21 | 8 |
male reproductive organ | 1.62e-15 | 11 |
stratified squamous epithelium | 1.83e-14 | 3 |
layer of synovial tissue | 1.83e-14 | 3 |
synovial joint | 1.83e-14 | 3 |
synovial membrane of synovial joint | 1.83e-14 | 3 |
body cavity or lining | 1.22e-13 | 49 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
body cavity | 1.36e-08 | 46 |
external genitalia | 2.82e-08 | 22 |
male organism | 2.82e-08 | 22 |
male reproductive system | 2.82e-08 | 22 |
body cavity precursor | 1.99e-07 | 54 |
temporal lobe | 6.39e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.82e-08 | 22 |
germ cell cancer | 2.82e-08 | 22 |