FFCP PHASE1:Hg19::chr19:11039216..11039248,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:11039216..11039248,-
|short_description=p2@YIPF2
|description=CAGE_peak_2_at_YIPF2_5end
|association_with_transcript=31bp_to_uc002mqb.2_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=78992 | |EntrezGene=78992 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28476 | |HGNC=28476 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=31bp_to_uc002mqb.2_5end | |||
|cluster_id=chr19:11039216..11039248,- | |||
|description=CAGE_peak_2_at_YIPF2_5end | |||
|id=chr19:11039216..11039248,- | |||
|ontology_enrichment_celltype=CL:0000066!3.69e-24!254;CL:0002076!6.44e-15!43;CL:0000223!9.48e-13!59;CL:0002159!1.44e-07!13;CL:0002251!2.01e-07!21;CL:0002368!4.72e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.91e-19;42!CL:0002251;2.26e-12;20!CL:0002368;1.15e-11;13!CL:0002159;6.77e-10;14!CL:0002202;3.25e-08;9!CL:0002632;3.25e-08;9!CL:0000349;4.50e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.86e-33,253;CL:0002076,2.53e-25,42;CL:0000223,1.97e-21,58;CL:0002251,2.81e-12,20;CL:0002368,9.14e-12,13;CL:0002159,6.30e-10,14;CL:0002202,3.09e-08,9;CL:0002632,3.09e-08,9;CL:0000349,4.66e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;1.41e-11;58 | |||
|ontology_enrichment_disease=DOID:305!7.18e-16!106;DOID:0050687!4.50e-11!143;DOID:1749!6.08e-07!14;DOID:299!9.33e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;2.70e-10;25!DOID:1749;1.51e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.19e-17,106;DOID:0050687,6.24e-12,143;DOID:299,2.41e-10,25;DOID:1749,2.39e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.44e-23!169;UBERON:0000925!6.44e-23!169;UBERON:0006595!6.44e-23!169;UBERON:0001007!1.46e-17!155;UBERON:0001555!1.46e-17!155;UBERON:0007026!1.46e-17!155;UBERON:0004921!8.49e-16!129;UBERON:0004185!8.49e-16!129;UBERON:0000077!8.49e-14!130;UBERON:0001004!9.74e-14!72;UBERON:0000464!2.27e-11!104;UBERON:0000466!3.21e-11!126;UBERON:0001041!3.85e-10!98;UBERON:0000065!7.66e-10!53;UBERON:0005911!9.90e-10!82;UBERON:0005156!8.17e-09!59;UBERON:0000990!8.17e-09!59;UBERON:0000161!1.15e-08!35;UBERON:0003104!1.53e-08!238;UBERON:0009142!1.53e-08!238;UBERON:0005153!1.65e-08!37;UBERON:0005631!3.38e-08!14;UBERON:0000158!3.38e-08!14;UBERON:0008947!5.88e-08!38;UBERON:0003258!5.88e-08!38;UBERON:0009569!1.30e-07!113;UBERON:0000072!1.40e-07!46;UBERON:0000481!1.41e-07!347;UBERON:0005178!1.73e-07!34;UBERON:0002224!1.73e-07!34;UBERON:0003133!2.05e-07!48;UBERON:0001048!2.80e-07!168;UBERON:0000166!4.93e-07!21;UBERON:0000915!6.04e-07!52;UBERON:0005181!6.46e-07!35;UBERON:0005177!9.31e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.61e-08;10!UBERON:0000158;1.61e-08;10!UBERON:0006554;3.49e-08;30!UBERON:0001008;3.49e-08;30!UBERON:0004921;5.72e-08;33!UBERON:0000161;1.22e-07;19!UBERON:0000166;1.22e-07;19!UBERON:0003135;1.32e-07;11!UBERON:0003101;2.09e-07;22!UBERON:0000079;2.09e-07;22!UBERON:0005911;2.74e-07;36!UBERON:0000365;6.86e-07;5!UBERON:0000344;9.71e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.20e-19,160;UBERON:0000925,1.20e-19,160;UBERON:0006595,1.20e-19,160;UBERON:0006554,8.85e-14,47;UBERON:0001008,2.74e-13,48;UBERON:0005631,3.92e-13,14;UBERON:0000158,3.92e-13,14;UBERON:0001007,5.37e-13,145;UBERON:0001555,5.37e-13,145;UBERON:0007026,5.37e-13,145;UBERON:0004921,1.89e-10,118;UBERON:0003124,5.17e-10,7;UBERON:0005177,7.36e-10,101;UBERON:0001004,1.09e-09,74;UBERON:0005911,2.06e-09,82;UBERON:0005156,7.83e-09,59;UBERON:0000990,7.83e-09,59;UBERON:0009569,8.45e-09,112;UBERON:0000161,2.56e-08,36;UBERON:0000166,3.65e-08,22;UBERON:0004175,4.47e-08,25;UBERON:0003133,6.69e-08,48;UBERON:0003135,1.69e-07,11;UBERON:0003101,2.62e-07,22;UBERON:0000079,2.62e-07,22;UBERON:0001041,3.69e-07,87;UBERON:0005153,4.16e-07,37;UBERON:0000365,6.43e-07,5 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,0,0,0.872338524100369,0,0.631719873426831,0,9.33788958705734,30.0054502228144,11.5773927228991,16.6173196283926,0.247532705920093,0,0,0.602694528023977,0.730310090387373,0,0.123121058076788,0,0.313454721478088,0,0,0.125542639594803,0,0.164201178899891,0,0,0,0.77408061658038,12.871897142705,9.638589400904,4.80680213216824,0,0,0.587200878669695,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0.853460445133014,0,0,0.661044872784862,0,0,0.587237189370939,0,0,0,0,0.590129310341499,0.393010762749165,0.205601498999509,0.668745981562712,0.32592226663359,0.473447805734733,0,0.222820913770347,0.294605907474837,0,1.08321545506006,0.640456598628376,0.130059347559878,0,0.276350017785848,0,0.296573126324121,0.535081656179426,0,0.226618685395132,0.383220493601921,0,0.253019692019503,0.318565414324097,0.651083453856419,0,0.451725357233318,0.127986611154418,0,0.236777252044017,0,0,0,0.724122019413995,0,0,0.12786256184353,0,0,0,0,0.973269740605272,0.0945348171640679,0.221729397462564,0.527008714158756,1.30979075497713,6.9216104775583,6.67411997011973,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0.275118041940067,0.417989933073621,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0.17859945656816,0,0.112611480483322,0,0,0,0,0,10.0301631992783,0.496971951695318,0.379891534993739,0.264818361626438,0,0.709336764396714,1.68203280042692,0,0.74000264525148,0.311211035399766,0.269421344139376,0.163461903113459,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0,0,0,0.140450806702248,0.61246251376468,0.122834317311768,0.206651562351531,0,0.494533858557114,0.910161361938026,0.718618141816238,0,0,0,0,0.612975591598039,0,0.340296549480063,0.179389635688862,0,0,0,0.206105058476878,0,0.18611685633159,0,0.194874010322397,0.252433774244115,0.276149695926898,0,0.355009592516614,0.201504196455281,0.169560592310488,9.66304265816484,7.0913991353617,4.87567812161307,2.31750041646231,1.19276791489337,3.48581828608555,3.83545903556871,3.02785021050754,0.72995471815166,0,1.28648187638577,0,0.464367928031979,0,0.591534000199219,0.505754070234305,0.482022059766964,0.882351781859152,0.653638332277218,0.237270619111097,0.674156540800822,0.392442930250692,0.769494313892781,0,0,0.8231480226628,0,6.33775174109154,0.982827216677626,0.590789906681404,0,6.64137568132813,0.343135620597051,7.02401826615204,7.86812272803337,3.31745608958382,3.51836091602412,0,0,0,0,0.821860859650752,0,0,0,10.2726571734706,12.0188062693282,0,0.468008530278475,0,6.56136837907439,7.0552493843521,4.25325291727159,3.85101647622248,4.65014301622339,3.83382679165211,0,0,0.207328115540772,0,0.25248486685276,0.063497894292169,0.381988425558278,0,0,0,0,0,0.224262168690721,0,0,0.258543431515556,0,0,0.26593811658487,0,0.514414748524284,0,0.266422179016099,0.142977993658148,0.542621605391443,0,0,0.710783897485092,0,0,1.74306691720059,0.399891964728228,0,0,0,0,0,0,0.579125226670317,0.61642896765115,0.179060963239896,0,0.197030760201927,0,0.256686072559497,0,1.30139853857622,0,0.335032530668698,0,0,2.99161459204025,0,0.24538298343828,0.500170521059677,0.271265023699736,0,0.356857977594324,0,0.117141414992713,0.300946099727719,0,0,0,1.10621501125022,0.173767228936166,0.195801157462741,0,0.206768026122887,0,0.213455115606889,16.6720164295443,43.2732142727292,24.1912234663744,0.248107807818777,0.460385919864187,0.280660094433074,0.128139149255701,1.02341449813341,0.804269605718038,1.48418066444991,0,0.710246901252508,0.164254312027618,0.519254429183621,0.232420756919918,6.76812917713084,16.8425435054759,3.40699659062816,0,0.182091168006717,0.393373244878272,3.15839729035188,1.84836809050595,0,0,1.26661954671451,0,0.170093705276516,0,0,1.08378575017541,2.00675909541941,2.54876273045038,4.98645605357235,1.79099803777743,0,0.522870902049801,0.512900250232778,1.31205858279882,0,3.40035338437484,0.0915694648183434,0,4.01985876597321,2.60024098414608,1.6068392984416,0,0.308097234229289,0.614014698904518,0,0.214840489736547,0.290033387828457,0.0852266274161009,0.178064071293475,5.61968712227326,5.38132188622297,3.57315594984836,3.74283789165535,0,0.62962469366128,0,0,0,0,0.55597265731176,0.858749320451947,1.116475108079,0.316379424718726,0.38126038784765,0.255897791311334,0,0,0.78494864019923,0.539617372749944,0.823611089208164,0.353437207037059,0.606547444719948,0,0.421258456238981,0.48763373908959,0.243713489631284,1.05650146756755,0.136499911407986,0.565621727814851,0,0.551365343546124,0.66343897524122,0,0.578775534266688,0,0.608731130888112,0.6196469961995,0.281695602532241,0.143411352204052,0.589494246078727,1.426684205925,0,0,0,0,0.699869440489966,4.23377295992253,5.3624182042863,7.62236894029258,3.67160823029439,15.9286987888355,11.7930032967338,12.8594744525636,13.5536806122106,0,0,0,0,0,0,0,0,0.106824071127473,0,2.69544237579135,0,0.144269212976445,0.0711418433484141,0,0.199579371432817,0,0,0,0,0.228234679033192,0.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| ||
|short_description=p2@YIPF2 | |||
}} | }} |
Latest revision as of 03:31, 25 September 2015
Short description: | p2@YIPF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_YIPF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 31bp_to_uc002mqb.2_5end |
EntrezGene: | YIPF2 |
HGNC: | 28476 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.86e-33 | 253 |
endo-epithelial cell | 2.53e-25 | 42 |
endodermal cell | 1.97e-21 | 58 |
epithelial cell of alimentary canal | 2.81e-12 | 20 |
respiratory epithelial cell | 9.14e-12 | 13 |
general ecto-epithelial cell | 6.30e-10 | 14 |
epithelial cell of tracheobronchial tree | 3.09e-08 | 9 |
epithelial cell of lower respiratory tract | 3.09e-08 | 9 |
extraembryonic cell | 4.66e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.20e-19 | 160 |
endoderm | 1.20e-19 | 160 |
presumptive endoderm | 1.20e-19 | 160 |
urinary system structure | 8.85e-14 | 47 |
renal system | 2.74e-13 | 48 |
extraembryonic membrane | 3.92e-13 | 14 |
membranous layer | 3.92e-13 | 14 |
digestive system | 5.37e-13 | 145 |
digestive tract | 5.37e-13 | 145 |
primitive gut | 5.37e-13 | 145 |
subdivision of digestive tract | 1.89e-10 | 118 |
chorion | 5.17e-10 | 7 |
trunk region element | 7.36e-10 | 101 |
respiratory system | 1.09e-09 | 74 |
endo-epithelium | 2.06e-09 | 82 |
reproductive structure | 7.83e-09 | 59 |
reproductive system | 7.83e-09 | 59 |
subdivision of trunk | 8.45e-09 | 112 |
orifice | 2.56e-08 | 36 |
oral opening | 3.65e-08 | 22 |
internal genitalia | 4.47e-08 | 25 |
reproductive organ | 6.69e-08 | 48 |
male reproductive organ | 1.69e-07 | 11 |
male organism | 2.62e-07 | 22 |
male reproductive system | 2.62e-07 | 22 |
foregut | 3.69e-07 | 87 |
epithelial bud | 4.16e-07 | 37 |
urothelium | 6.43e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.19e-17 | 106 |
cell type cancer | 6.24e-12 | 143 |
adenocarcinoma | 2.41e-10 | 25 |
squamous cell carcinoma | 2.39e-08 | 14 |