FFCP PHASE1:Hg19::chr2:74781033..74781046,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84695 | |EntrezGene=84695 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13869 | |HGNC=13869 | ||
|TSSclassifier=strong | |||
|UniProt=P58215,Q2EHP2,Q6IPL7 | |UniProt=P58215,Q2EHP2,Q6IPL7 | ||
|association_with_transcript=15bp_to_ENST00000264094,NM_032603,uc002smp.1,uc002smq.1,uc010ffn.1_5end | |association_with_transcript=15bp_to_ENST00000264094,NM_032603,uc002smp.1,uc002smq.1,uc010ffn.1_5end | ||
|cluster_id=chr2:74781033..74781046,- | |||
|coexpression_cluster_id=C4245 | |coexpression_cluster_id=C4245 | ||
|description=CAGE_peak_4_at_LOXL3_5end | |description=CAGE_peak_4_at_LOXL3_5end | ||
|id=chr2:74781033..74781046,- | |id=chr2:74781033..74781046,- | ||
|ontology_enrichment_celltype=CL:0000055!5.52e-36!180;CL:0000057!4.98e-28!75;CL:0000048!5.01e-13!430;CL:0000723!2.67e-12!436;CL:0000034!4.07e-12!444;CL:0002334!3.25e-11!12;CL:0002620!6.49e-10!23;CL:0002320!7.54e-10!365;CL:0000219!1.64e-08!390;CL:0000667!1.90e-08!6;CL:0000058!1.90e-08!6;CL:0000138!1.90e-08!6;CL:0000134!8.77e-08!358;CL:0000499!8.99e-08!27;CL:0000359!1.90e-07!32;CL:0002371!2.85e-07!591;CL:0000144!3.90e-07!625;CL:0002494!6.93e-07!16;CL:0000327!8.07e-07!14 | |ontology_enrichment_celltype=CL:0000055!5.52e-36!180;CL:0000057!4.98e-28!75;CL:0000048!5.01e-13!430;CL:0000723!2.67e-12!436;CL:0000034!4.07e-12!444;CL:0002334!3.25e-11!12;CL:0002620!6.49e-10!23;CL:0002320!7.54e-10!365;CL:0000219!1.64e-08!390;CL:0000667!1.90e-08!6;CL:0000058!1.90e-08!6;CL:0000138!1.90e-08!6;CL:0000134!8.77e-08!358;CL:0000499!8.99e-08!27;CL:0000359!1.90e-07!32;CL:0002371!2.85e-07!591;CL:0000144!3.90e-07!625;CL:0002494!6.93e-07!16;CL:0000327!8.07e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000138;1.18e-15;6!CL:0000153;4.06e-13;9!CL:0000447;4.06e-13;9!CL:0002334;1.02e-12;12!CL:0002595;2.34e-11;5!CL:0002494;2.13e-10;16!CL:0000359;3.72e-10;32!CL:0000499;2.06e-09;28!CL:0000327;2.82e-09;15!CL:0000057;6.14e-08;73!CL:0002592;1.11e-07;3!CL:0002580;2.38e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.73e-21,76;CL:0000058,1.18e-15,6;CL:0000138,1.18e-15,6;CL:0000048,6.72e-15,427;CL:0000723,2.00e-14,433;CL:0000034,8.14e-14,441;CL:0000153,4.21e-13,9;CL:0000447,4.21e-13,9;CL:0002334,1.08e-12,12;CL:0002595,2.23e-11,5;CL:0002320,5.12e-11,361;CL:0000359,1.38e-10,32;CL:0002494,2.39e-10,16;CL:0000134,1.05e-09,354;CL:0000499,2.08e-09,28;CL:0000327,2.86e-09,15;CL:0000219,4.62e-08,386;CL:0002592,9.07e-08,3;CL:0002580,1.91e-07,3;CL:0000192,4.94e-07,43;CL:0000514,4.94e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!8.53e-12!375;UBERON:0000914!3.56e-08!83;UBERON:0002329!3.56e-08!83;UBERON:0003077!3.56e-08!83;UBERON:0003059!3.56e-08!83;UBERON:0007282!3.56e-08!83;UBERON:0009618!3.56e-08!83;UBERON:0007285!3.56e-08!83;UBERON:0004573!5.30e-08!33;UBERON:0004571!5.30e-08!33;UBERON:0001637!3.29e-07!42;UBERON:0003509!3.29e-07!42;UBERON:0004572!3.29e-07!42;UBERON:0003102!6.62e-07!95 | |ontology_enrichment_uberon=UBERON:0002384!8.53e-12!375;UBERON:0000914!3.56e-08!83;UBERON:0002329!3.56e-08!83;UBERON:0003077!3.56e-08!83;UBERON:0003059!3.56e-08!83;UBERON:0007282!3.56e-08!83;UBERON:0009618!3.56e-08!83;UBERON:0007285!3.56e-08!83;UBERON:0004573!5.30e-08!33;UBERON:0004571!5.30e-08!33;UBERON:0001637!3.29e-07!42;UBERON:0003509!3.29e-07!42;UBERON:0004572!3.29e-07!42;UBERON:0003102!6.62e-07!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.91e-12;33!UBERON:0004571;7.91e-12;33!UBERON:0003834;2.34e-11;5!UBERON:0001533;2.34e-11;5!UBERON:0001637;9.16e-10;42!UBERON:0003509;9.16e-10;42!UBERON:0004572;9.16e-10;42!UBERON:0003513;5.51e-08;7!UBERON:0002384;8.75e-08;198!UBERON:0003498;1.11e-07;3!UBERON:0005985;1.11e-07;3!UBERON:0001621;1.11e-07;3!UBERON:0000948;4.74e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,5.62e-14,33;UBERON:0004571,5.62e-14,33;UBERON:0002384,5.53e-13,371;UBERON:0001637,1.97e-11,42;UBERON:0003509,1.97e-11,42;UBERON:0004572,1.97e-11,42;UBERON:0003834,2.23e-11,5;UBERON:0001533,2.23e-11,5;UBERON:0004872,1.68e-08,83;UBERON:0003513,5.33e-08,7;UBERON:0001621,9.07e-08,3;UBERON:0007500,6.18e-07,59;UBERON:0001981,6.18e-07,59;UBERON:0004537,6.18e-07,59;UBERON:0006965,6.18e-07,59 | |||
|phase1_expression=1.2717486548939,2.78330681058278,2.25527046553554,0,0.446961094427288,2.61701557230111,0,0,0.261185628199839,0,0,0,0,0.495065411840187,1.65698687863958,0,0,0,0,0.369363174230364,1.63200552995402,0.626909442956176,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895037932904712,15.1804444001518,15.0401373190767,12.7464936685525,6.36228757640879,24.3317435151318,0,0.443458794925128,0.175669571386252,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,2.78587125662075,2.64818361626438,5.73673241497627,0.709336764396714,4.48542080113846,1.06748995729705,7.89336154934912,0,0,0,0.454072282934794,0,0,0,0,0.298897361103602,0,0.161872944368132,0.140450806702248,0.61246251376468,1.10550885580591,0.826606249406124,1.18800285728205,3.70900393917835,0,0,0.505008341862199,0.375355559615893,1.10825646193673,0.438977620880838,7.04921930337745,7.21142682751665,0.794025282120147,2.15267562826634,1.92201649936711,0.423863802319124,2.70081986475962,0.309157587715317,2.06112432036503,0.558350568994769,0.168776332241266,0.0974370051611986,0.252433774244115,0.736399189138395,0.161646056818812,2.4850671476163,0.503760491138201,1.18692414617341,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11980435583874,0,0.115930404975077,1.17408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560655421726804,1.30788020649984,0.1466765716419,0.258543431515556,0,0,0.26593811658487,0,0.257207374262142,0,1.0656887160644,0.142977993658148,0.542621605391443,0,0,0,0,0.301439377059586,0,0.499864955910285,0,0,0,12.2208676300707,4.59447743336456,0,1.73737568001095,0,1.25342674267927,0,0,0,0,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0.613457458595699,2.50085260529839,1.89885516589815,2.07970861530807,3.39015078714607,0.946214490203608,1.52283839490527,2.70851489754947,2.27407504055985,1.03473071292505,0,2.21243002250044,1.04260337361699,0.391602314925481,0.343143423810856,0,0,0,0,0,0.604780586659361,2.23297027036899,3.06923946576125,1.96462066103151,2.05022638809122,0.511707249066704,1.28683136914886,1.48418066444991,1.3878872442239,1.42049380250502,0.821271560138091,1.03850885836724,0.464841513839837,0,0,0,0.114814448164607,1.45672934405374,0.393373244878272,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0.193341436584244,0.154048617114644,0,0.137836572484531,0.322260734604821,0,0,0.178064071293475,0,0,0,0,0,18.8887408098384,0,0.308033580176089,3.19383618190213,0.869932992075073,1.11194531462352,4.29374660225974,0,0,0.190630193923825,0,0,0,1.56989728039846,0,0,0,4.04364963146632,1.58510321173008,5.89761838734574,0,8.28625864746367,1.05650146756755,0.136499911407986,0.141405431953713,0,1.65409603063837,2.65375590096488,4.38450885253763,0,0,0.202910376962704,0,1.12678241012897,0,0.0982490410131212,0,0,1.26664581178598,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0.383010740264733,1.05836791361941,0.324621940274555,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,5.55684950723184,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0.569710279235006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.4191811021741,0.451961481561065,2.60379656828827,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0.223171457441873,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0.864221491201268,0,0,0.164185041498678,0,0.113312091520126,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.758245587708239,0,0,0,0,1.34329322598187,4.44055288709727,0.554805861502613,3.59865710022669,0.754703705257725,0,2.05956061557231,0.302461847526478,3.26418121223839,7.24490234949206,0,0,0.465788870628778,2.07353103920428,0.797525143673985,0.521745061811734,0.450772826991655,0,0,0,0,0,0,0.400027764663154,1.71697852591396,1.01024846629776,0,0,0,0,0.453411851024545,0.231522474323834,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39337735327393,0,0,0.255788742607303,0.431299245586727,0,0.436838552768056,0,0,0,0,0.636008701306837,0,0,2.82140754952547,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0.762764190934334,0,0,0.0752103283492573,1.41193548092464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,5.69582984303814,0.173858272302579,0,0,0,0,0,0.354996002191696,0.170426809518315,0,0,0,0,0,0,0,0,0,0,0,0,0.596852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| ||
|short_description=p4@LOXL3 | |short_description=p4@LOXL3 | ||
}} | }} |
Latest revision as of 12:03, 18 September 2015
Short description: | p4@LOXL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LOXL3_5end |
Coexpression cluster: | C4245_Smooth_extraskeletal_Chondrocyte_rhabdomyosarcoma_Multipotent_Fibroblast_spindle |
Association with transcript: | 15bp_to_ENST00000264094, NM_032603, uc002smp.1, uc002smq.1, uc010ffn.1_5end |
EntrezGene: | LOXL3 |
HGNC: | 13869 |
UniProt: | P58215Q2EHP2Q6IPL7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.73e-21 | 76 |
chondroblast | 1.18e-15 | 6 |
chondrocyte | 1.18e-15 | 6 |
multi fate stem cell | 6.72e-15 | 427 |
somatic stem cell | 2.00e-14 | 433 |
stem cell | 8.14e-14 | 441 |
GAG secreting cell | 4.21e-13 | 9 |
carbohydrate secreting cell | 4.21e-13 | 9 |
preadipocyte | 1.08e-12 | 12 |
smooth muscle cell of the subclavian artery | 2.23e-11 | 5 |
connective tissue cell | 5.12e-11 | 361 |
vascular associated smooth muscle cell | 1.38e-10 | 32 |
cardiocyte | 2.39e-10 | 16 |
mesenchymal cell | 1.05e-09 | 354 |
stromal cell | 2.08e-09 | 28 |
extracellular matrix secreting cell | 2.86e-09 | 15 |
motile cell | 4.62e-08 | 386 |
smooth muscle cell of the coronary artery | 9.07e-08 | 3 |
preadipocyte of the breast | 1.91e-07 | 3 |
smooth muscle cell | 4.94e-07 | 43 |
smooth muscle myoblast | 4.94e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 5.62e-14 | 33 |
systemic arterial system | 5.62e-14 | 33 |
connective tissue | 5.53e-13 | 371 |
artery | 1.97e-11 | 42 |
arterial blood vessel | 1.97e-11 | 42 |
arterial system | 1.97e-11 | 42 |
thoracic segment blood vessel | 2.23e-11 | 5 |
subclavian artery | 2.23e-11 | 5 |
splanchnic layer of lateral plate mesoderm | 1.68e-08 | 83 |
trunk blood vessel | 5.33e-08 | 7 |
coronary artery | 9.07e-08 | 3 |
epithelial tube open at both ends | 6.18e-07 | 59 |
blood vessel | 6.18e-07 | 59 |
blood vasculature | 6.18e-07 | 59 |
vascular cord | 6.18e-07 | 59 |