FFCP PHASE1:Hg19::chr3:170626640..170626659,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:170626640..170626659,+ | |||
|coexpression_cluster_id=C4305 | |coexpression_cluster_id=C4305 | ||
|description=CAGE_peak_at_chr3:170626640..170626659,+ | |description=CAGE_peak_at_chr3:170626640..170626659,+ | ||
|id=chr3:170626640..170626659,+ | |id=chr3:170626640..170626659,+ | ||
|ontology_enrichment_celltype=CL:0000077!1.38e-11!19;CL:0000066!1.20e-08!254;CL:0000076!2.08e-07!62 | |ontology_enrichment_celltype=CL:0000077!1.38e-11!19;CL:0000066!1.20e-08!254;CL:0000076!2.08e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0000077;1.27e-20;19!CL:0002535;1.35e-11;2!CL:0000082;3.67e-09;19!CL:0000039;4.80e-07;7!CL:0000586;4.80e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.07e-20,19;CL:0000076,2.03e-15,63;CL:0000066,1.42e-14,253;CL:0002535,1.35e-11,2;CL:0000082,4.54e-09,19;CL:0000039,5.93e-07,7;CL:0000586,5.93e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.91e-07;30 | |||
|ontology_enrichment_disease=DOID:162!6.34e-25!235;DOID:14566!8.95e-24!239;DOID:0050687!7.19e-21!143;DOID:305!8.52e-19!106;DOID:0050686!3.93e-08!137;DOID:0050615!4.06e-08!16;DOID:1749!5.78e-08!14;DOID:1324!3.33e-07!15 | |ontology_enrichment_disease=DOID:162!6.34e-25!235;DOID:14566!8.95e-24!239;DOID:0050687!7.19e-21!143;DOID:305!8.52e-19!106;DOID:0050686!3.93e-08!137;DOID:0050615!4.06e-08!16;DOID:1749!5.78e-08!14;DOID:1324!3.33e-07!15 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.84e-13;14!DOID:1325;7.56e-12;7!DOID:3904;7.56e-12;7!DOID:1324;9.32e-12;15!DOID:0050615;5.49e-11;16!DOID:4362;6.54e-10;5!DOID:3905;2.01e-09;9 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.31e-21,106;DOID:0050687,1.11e-20,143;DOID:162,3.40e-20,235;DOID:14566,1.24e-19,239;DOID:1749,3.97e-13,14;DOID:1324,1.23e-11,15;DOID:1325,1.23e-11,7;DOID:3904,1.23e-11,7;DOID:0050615,7.10e-11,16;DOID:4362,6.96e-10,5;DOID:3905,2.81e-09,9 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0006955;1.35e-11;2!UBERON:0004801;1.35e-11;2!UBERON:0005911;4.82e-10;36!UBERON:0004802;3.67e-09;19!UBERON:0000115;3.67e-09;19!UBERON:0000002;2.47e-08;6!UBERON:0001560;2.47e-08;6!UBERON:0002048;7.83e-08;22!UBERON:0004807;7.83e-08;22!UBERON:0000117;7.83e-08;22!UBERON:0000171;7.83e-08;22!UBERON:0000170;7.83e-08;22!UBERON:0002294;2.58e-07;7!UBERON:0001173;2.58e-07;7!UBERON:0004913;5.89e-07;1!UBERON:0003703;5.89e-07;1!UBERON:0001174;5.89e-07;1!UBERON:0004914;5.89e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,1.35e-11,2;UBERON:0004801,1.35e-11,2;UBERON:0005911,1.84e-09,82;UBERON:0004802,4.54e-09,19;UBERON:0000115,4.54e-09,19;UBERON:0000002,2.60e-08,6;UBERON:0001560,2.60e-08,6;UBERON:0002048,9.37e-08,22;UBERON:0000117,9.37e-08,22;UBERON:0000171,9.37e-08,22;UBERON:0000170,9.37e-08,22;UBERON:0005597,9.37e-08,22;UBERON:0000118,9.37e-08,22;UBERON:0004913,5.90e-07,1;UBERON:0003703,5.90e-07,1;UBERON:0001174,5.90e-07,1;UBERON:0004914,5.90e-07,1 | |||
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| ||
|short_description=p@chr3:170626640..170626659,+ | |short_description=p@chr3:170626640..170626659,+ | ||
}} | }} |
Latest revision as of 18:13, 29 July 2015
Short description: | p@chr3:170626640..170626659, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:170626640..170626659, + |
Coexpression cluster: | C4305_epidermoid_papillotubular_mesothelioma_malignant_bronchioalveolar_myxofibrosarcoma_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.07e-20 | 19 |
squamous epithelial cell | 2.03e-15 | 63 |
epithelial cell | 1.42e-14 | 253 |
epithelial cell of cervix | 1.35e-11 | 2 |
epithelial cell of lung | 4.54e-09 | 19 |
germ line cell | 5.93e-07 | 7 |
germ cell | 5.93e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 1.35e-11 | 2 |
cervix epithelium | 1.35e-11 | 2 |
endo-epithelium | 1.84e-09 | 82 |
respiratory tract epithelium | 4.54e-09 | 19 |
lung epithelium | 4.54e-09 | 19 |
uterine cervix | 2.60e-08 | 6 |
neck of organ | 2.60e-08 | 6 |
lung | 9.37e-08 | 22 |
respiratory tube | 9.37e-08 | 22 |
respiration organ | 9.37e-08 | 22 |
pair of lungs | 9.37e-08 | 22 |
lung primordium | 9.37e-08 | 22 |
lung bud | 9.37e-08 | 22 |
hepatopancreatic ampulla | 5.90e-07 | 1 |
extrahepatic bile duct | 5.90e-07 | 1 |
common bile duct | 5.90e-07 | 1 |
duodenal papilla | 5.90e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.31e-21 | 106 |
cell type cancer | 1.11e-20 | 143 |
cancer | 3.40e-20 | 235 |
disease of cellular proliferation | 1.24e-19 | 239 |
squamous cell carcinoma | 3.97e-13 | 14 |
lung cancer | 1.23e-11 | 15 |
bronchus cancer | 1.23e-11 | 7 |
bronchogenic carcinoma | 1.23e-11 | 7 |
respiratory system cancer | 7.10e-11 | 16 |
cervical cancer | 6.96e-10 | 5 |
lung carcinoma | 2.81e-09 | 9 |