FFCP PHASE1:Hg19::chr3:30560333..30560348,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:30560333..30560348,+ | |||
|coexpression_cluster_id=C357 | |coexpression_cluster_id=C357 | ||
|description=CAGE_peak_at_chr3:30560333..30560348,+ | |description=CAGE_peak_at_chr3:30560333..30560348,+ | ||
|id=chr3:30560333..30560348,+ | |id=chr3:30560333..30560348,+ | ||
|ontology_enrichment_celltype=CL:0002139!1.57e-36!24;CL:0000115!4.13e-26!35;CL:0000071!1.64e-21!18;CL:0002546!1.64e-21!18;CL:0002078!1.13e-19!44;CL:0005020!3.46e-18!6;CL:0002138!3.46e-18!6;CL:0005022!3.46e-18!6;CL:0000213!5.30e-14!57;CL:0000215!5.30e-14!57;CL:1000413!1.70e-11!9;CL:0002144!2.11e-10!3;CL:0002544!2.43e-08!6 | |ontology_enrichment_celltype=CL:0002139!1.57e-36!24;CL:0000115!4.13e-26!35;CL:0000071!1.64e-21!18;CL:0002546!1.64e-21!18;CL:0002078!1.13e-19!44;CL:0005020!3.46e-18!6;CL:0002138!3.46e-18!6;CL:0005022!3.46e-18!6;CL:0000213!5.30e-14!57;CL:0000215!5.30e-14!57;CL:1000413!1.70e-11!9;CL:0002144!2.11e-10!3;CL:0002544!2.43e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0002144;1.47e-60;3!CL:0002139;2.44e-52;24!CL:0002138;2.65e-30;6!CL:0000071;1.01e-27;18!CL:0000115;2.86e-24;36!CL:0002078;1.76e-21;45!CL:0002581;6.31e-21;1!CL:0002544;4.53e-14;6!CL:0000213;1.83e-13;58!CL:0000215;1.83e-13;58!CL:1000413;1.05e-09;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,1.33e-60,3;CL:0002139,2.98e-52,24;CL:0000115,8.21e-35,36;CL:0005020,3.40e-30,6;CL:0002138,3.40e-30,6;CL:0005022,3.40e-30,6;CL:0002078,8.02e-28,45;CL:0000071,1.04e-27,18;CL:0002546,1.04e-27,18;CL:0000213,1.53e-21,58;CL:0000215,1.53e-21,58;CL:0002581,4.22e-21,1;CL:0002544,4.84e-14,6;CL:0000222,3.71e-10,121;CL:1000413,1.10e-09,9;CL:0000076,5.00e-08,63 | |||
|ontology_enrichment_development_v019=CL:0005022;2.65e-30;6!CL:0002546;1.01e-27;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.64e-21!18;UBERON:0004638!1.64e-21!18;UBERON:0004852!1.64e-21!18;UBERON:0000487!4.75e-17!22;UBERON:0001009!6.37e-15!113;UBERON:0000055!7.80e-15!69;UBERON:0006914!1.20e-14!25;UBERON:0002049!1.56e-13!79;UBERON:0007798!1.56e-13!79;UBERON:0001473!1.98e-13!8;UBERON:0004536!1.98e-13!8;UBERON:0006558!1.98e-13!8;UBERON:0004535!3.89e-13!110;UBERON:0003915!1.70e-11!9;UBERON:0004700!1.70e-11!9;UBERON:0001917!1.70e-11!9;UBERON:0004111!1.33e-10!241;UBERON:0002465!1.43e-10!10;UBERON:0007023!1.93e-10!115;UBERON:0001915!2.11e-10!3;UBERON:0001982!2.11e-10!3;UBERON:0004872!1.47e-09!84;UBERON:0000477!1.34e-08!286;UBERON:0001981!1.88e-08!60;UBERON:0007500!1.88e-08!60;UBERON:0004537!1.88e-08!60;UBERON:0006965!1.88e-08!60;UBERON:0003914!1.33e-07!118;UBERON:0002081!3.26e-07!2 | |ontology_enrichment_uberon=UBERON:0001986!1.64e-21!18;UBERON:0004638!1.64e-21!18;UBERON:0004852!1.64e-21!18;UBERON:0000487!4.75e-17!22;UBERON:0001009!6.37e-15!113;UBERON:0000055!7.80e-15!69;UBERON:0006914!1.20e-14!25;UBERON:0002049!1.56e-13!79;UBERON:0007798!1.56e-13!79;UBERON:0001473!1.98e-13!8;UBERON:0004536!1.98e-13!8;UBERON:0006558!1.98e-13!8;UBERON:0004535!3.89e-13!110;UBERON:0003915!1.70e-11!9;UBERON:0004700!1.70e-11!9;UBERON:0001917!1.70e-11!9;UBERON:0004111!1.33e-10!241;UBERON:0002465!1.43e-10!10;UBERON:0007023!1.93e-10!115;UBERON:0001915!2.11e-10!3;UBERON:0001982!2.11e-10!3;UBERON:0004872!1.47e-09!84;UBERON:0000477!1.34e-08!286;UBERON:0001981!1.88e-08!60;UBERON:0007500!1.88e-08!60;UBERON:0004537!1.88e-08!60;UBERON:0006965!1.88e-08!60;UBERON:0003914!1.33e-07!118;UBERON:0002081!3.26e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0010523;1.47e-60;3!UBERON:0001915;1.47e-60;3!UBERON:0001982;1.47e-60;3!UBERON:0004638;1.01e-27;18!UBERON:0001986;1.01e-27;18!UBERON:0004852;1.01e-27;18!UBERON:0001473;6.19e-23;8!UBERON:0004536;6.19e-23;8!UBERON:0006558;6.19e-23;8!UBERON:0000487;9.79e-23;22!UBERON:0002134;6.31e-21;1!UBERON:0005208;6.31e-21;1!UBERON:0004145;6.31e-21;1!UBERON:0005946;6.31e-21;1!UBERON:0005965;6.31e-21;1!UBERON:0002078;6.31e-21;1!UBERON:0006914;4.88e-20;25!UBERON:0002465;1.68e-18;10!UBERON:0000490;1.42e-14;33!UBERON:0000055;1.90e-13;65!UBERON:0002081;3.70e-11;2!UBERON:0002133;3.70e-11;2!UBERON:0005406;3.70e-11;2!UBERON:0003915;1.05e-09;9!UBERON:0004700;1.05e-09;9!UBERON:0001917;1.05e-09;9!UBERON:0001009;4.05e-08;112!UBERON:0003978;7.26e-08;3!UBERON:0004151;7.26e-08;3!UBERON:0000946;7.26e-08;3!UBERON:0007500;1.44e-07;56!UBERON:0001981;1.44e-07;56!UBERON:0004537;1.44e-07;56!UBERON:0002405;2.99e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,1.33e-60,3;UBERON:0001915,1.33e-60,3;UBERON:0001982,1.33e-60,3;UBERON:0004638,1.04e-27,18;UBERON:0001986,1.04e-27,18;UBERON:0004852,1.04e-27,18;UBERON:0000055,3.50e-23,68;UBERON:0001473,7.47e-23,8;UBERON:0004536,7.47e-23,8;UBERON:0006558,7.47e-23,8;UBERON:0000487,1.00e-22,22;UBERON:0002134,5.16e-21,1;UBERON:0005208,5.16e-21,1;UBERON:0005946,5.16e-21,1;UBERON:0005965,5.16e-21,1;UBERON:0002078,5.16e-21,1;UBERON:0002049,3.58e-20,78;UBERON:0007798,3.58e-20,78;UBERON:0006914,4.98e-20,25;UBERON:0002465,1.94e-18,10;UBERON:0004535,2.47e-14,109;UBERON:0001009,6.14e-14,112;UBERON:0007500,4.52e-12,59;UBERON:0001981,4.52e-12,59;UBERON:0004537,4.52e-12,59;UBERON:0006965,4.52e-12,59;UBERON:0005406,3.02e-11,2;UBERON:0002081,3.35e-11,2;UBERON:0002133,3.35e-11,2;UBERON:0010227,3.35e-11,2;UBERON:0003915,1.10e-09,9;UBERON:0004700,1.10e-09,9;UBERON:0001917,1.10e-09,9;UBERON:0004872,1.51e-08,83;UBERON:0003978,6.78e-08,3;UBERON:0009751,6.78e-08,3;UBERON:0004151,6.78e-08,3;UBERON:0000946,6.78e-08,3;UBERON:0002523,6.78e-08,3;UBERON:0005983,6.78e-08,3;UBERON:0004145,6.78e-08,3;UBERON:0002165,6.78e-08,3;UBERON:0002062,6.78e-08,3;UBERON:0007280,6.78e-08,3 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,1.38856200643038,1.13061588384802,0.838998872419812,0.275118041940067,0,0.775250277507987,0.71153252537342,1.00416183829401,6.44526907374635,3.80136052859256,7.80998584154142,0,0.81014194788176,0.892997282840798,0.44905874525234,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0.404132016209064,0.326923806226917,0.302714855289863,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.46479474626577,0.462985512576611,2.85381228351897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.442287822516696,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353024506766001,0.225980740780532,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43574604915363,0.199679000498991,0,0.446342914883745,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706437835654626,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.307988420568741,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,0.639701945702943,0.23806443146374,0,0,0,0.445530107947154,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0.665756774185513,0.201273793591026,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39752481473341,0,1.38856200643038,1.13061588384802,0.838998872419812,0.275118041940067,0,0.775250277507987,0.71153252537342,1.00416183829401,6.44526907374635,3.80136052859256,7.80998584154142,0,0.81014194788176,0.892997282840798,0.44905874525234,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0.404132016209064,0.326923806226917,0.302714855289863,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.46479474626577,0.462985512576611,2.85381228351897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.442287822516696,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353024506766001,0.225980740780532,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43574604915363,0.199679000498991,0,0.446342914883745,0.201550417460179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0.714695326373367,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0.414239055347196,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706437835654626,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0.307988420568741,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,0.639701945702943,0.23806443146374,0,0,0,0.445530107947154,0,0.217716747896961,0,0,0,0.332660356546013,0,0,0,0,0,0,0,0.665756774185513,0.201273793591026,0 | ||
|short_description=p@chr3:30560333..30560348,+ | |short_description=p@chr3:30560333..30560348,+ | ||
}} | }} |
Latest revision as of 20:21, 29 July 2015
Short description: | p@chr3:30560333..30560348, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:30560333..30560348, + |
Coexpression cluster: | C357_Endothelial_Lymphatic_Renal_Hepatic_seminal_breast_heart |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 1.33e-60 | 3 |
endothelial cell of vascular tree | 2.98e-52 | 24 |
endothelial cell | 8.21e-35 | 36 |
lymphangioblast | 3.40e-30 | 6 |
endothelial cell of lymphatic vessel | 3.40e-30 | 6 |
vascular lymphangioblast | 3.40e-30 | 6 |
meso-epithelial cell | 8.02e-28 | 45 |
blood vessel endothelial cell | 1.04e-27 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.04e-27 | 18 |
lining cell | 1.53e-21 | 58 |
barrier cell | 1.53e-21 | 58 |
perirenal preadipocyte | 4.22e-21 | 1 |
aortic endothelial cell | 4.84e-14 | 6 |
mesodermal cell | 3.71e-10 | 121 |
endothelial cell of artery | 1.10e-09 | 9 |
squamous epithelial cell | 5.00e-08 | 63 |