FFCP PHASE1:Hg19::chr4:138453606..138453673,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54510 | |EntrezGene=54510 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14268 | |HGNC=14268 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HCL0,D6RIG4,B4DQ29 | |UniProt=Q9HCL0,D6RIG4,B4DQ29 | ||
|association_with_transcript=0bp_to_ENST00000344876,ENST00000412923,ENST00000507846,ENST00000510305,NM_019035,uc003ihe.3,uc003ihf.3,uc003ihg.3,uc011cgz.1,uc011cha.1_5end | |association_with_transcript=0bp_to_ENST00000344876,ENST00000412923,ENST00000507846,ENST00000510305,NM_019035,uc003ihe.3,uc003ihf.3,uc003ihg.3,uc011cgz.1,uc011cha.1_5end | ||
|cluster_id=chr4:138453606..138453673,- | |||
|coexpression_cluster_id=C4371 | |coexpression_cluster_id=C4371 | ||
|description=CAGE_peak_1_at_PCDH18_5end | |description=CAGE_peak_1_at_PCDH18_5end | ||
|id=chr4:138453606..138453673,- | |id=chr4:138453606..138453673,- | ||
|ontology_enrichment_celltype=CL:0000055!4.25e-33!180;CL:0000057!3.10e-23!75;CL:0002620!1.00e-12!23;CL:0000680!6.32e-08!57;CL:0000056!6.32e-08!57;CL:0000355!6.32e-08!57;CL:0000136!7.51e-08!15;CL:0000393!8.02e-08!60;CL:0000211!8.02e-08!60;CL:0000187!2.02e-07!54;CL:0000183!2.70e-07!59 | |ontology_enrichment_celltype=CL:0000055!4.25e-33!180;CL:0000057!3.10e-23!75;CL:0002620!1.00e-12!23;CL:0000680!6.32e-08!57;CL:0000056!6.32e-08!57;CL:0000355!6.32e-08!57;CL:0000136!7.51e-08!15;CL:0000393!8.02e-08!60;CL:0000211!8.02e-08!60;CL:0000187!2.02e-07!54;CL:0000183!2.70e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.89e-13;23!CL:0000057;1.44e-09;73!CL:0002320;2.07e-07;188!CL:0000136;7.44e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.91e-23,76;CL:0002620,2.79e-13,23;CL:0000136,3.65e-08,15;CL:0000680,4.25e-08,58;CL:0000056,4.25e-08,58;CL:0000355,4.25e-08,58;CL:0000393,5.35e-08,61;CL:0000211,5.35e-08,61;CL:0000187,1.43e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!6.05e-17!365;UBERON:0003102!3.46e-14!95;UBERON:0000914!1.84e-13!83;UBERON:0002329!1.84e-13!83;UBERON:0003077!1.84e-13!83;UBERON:0003059!1.84e-13!83;UBERON:0007282!1.84e-13!83;UBERON:0009618!1.84e-13!83;UBERON:0007285!1.84e-13!83;UBERON:0004290!4.92e-11!70;UBERON:0000468!9.05e-11!659;UBERON:0002199!1.42e-10!45;UBERON:0002416!1.42e-10!45;UBERON:0000481!4.64e-10!347;UBERON:0002097!4.56e-09!40;UBERON:0002385!5.75e-09!63;UBERON:0001015!5.75e-09!63;UBERON:0000383!5.75e-09!63;UBERON:0000486!9.10e-09!82;UBERON:0001134!1.86e-08!61;UBERON:0002036!1.86e-08!61;UBERON:0003082!1.86e-08!61;UBERON:0004121!3.39e-08!169;UBERON:0000924!4.38e-08!173;UBERON:0006601!4.38e-08!173;UBERON:0000033!4.39e-08!123;UBERON:0000153!6.68e-08!129;UBERON:0007811!6.68e-08!129 | |ontology_enrichment_uberon=UBERON:0000475!6.05e-17!365;UBERON:0003102!3.46e-14!95;UBERON:0000914!1.84e-13!83;UBERON:0002329!1.84e-13!83;UBERON:0003077!1.84e-13!83;UBERON:0003059!1.84e-13!83;UBERON:0007282!1.84e-13!83;UBERON:0009618!1.84e-13!83;UBERON:0007285!1.84e-13!83;UBERON:0004290!4.92e-11!70;UBERON:0000468!9.05e-11!659;UBERON:0002199!1.42e-10!45;UBERON:0002416!1.42e-10!45;UBERON:0000481!4.64e-10!347;UBERON:0002097!4.56e-09!40;UBERON:0002385!5.75e-09!63;UBERON:0001015!5.75e-09!63;UBERON:0000383!5.75e-09!63;UBERON:0000486!9.10e-09!82;UBERON:0001134!1.86e-08!61;UBERON:0002036!1.86e-08!61;UBERON:0003082!1.86e-08!61;UBERON:0004121!3.39e-08!169;UBERON:0000924!4.38e-08!173;UBERON:0006601!4.38e-08!173;UBERON:0000033!4.39e-08!123;UBERON:0000153!6.68e-08!129;UBERON:0007811!6.68e-08!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;4.50e-08;198!UBERON:0002385;2.76e-07;31!UBERON:0001015;2.76e-07;31!UBERON:0000383;2.76e-07;31!UBERON:0001013;6.29e-07;14!UBERON:0002199;6.99e-07;46!UBERON:0002416;6.99e-07;46!UBERON:0002097;9.37e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,1.64e-12,99;UBERON:0007524,9.43e-12,73;UBERON:0002329,2.45e-11,71;UBERON:0003059,2.45e-11,71;UBERON:0007282,2.45e-11,71;UBERON:0004290,2.45e-11,71;UBERON:0009618,2.45e-11,71;UBERON:0003077,2.68e-11,72;UBERON:0007285,2.68e-11,72;UBERON:0002199,3.28e-10,46;UBERON:0002416,3.28e-10,46;UBERON:0010314,1.79e-09,132;UBERON:0002385,3.48e-09,64;UBERON:0001015,3.48e-09,64;UBERON:0000383,3.48e-09,64;UBERON:0007503,3.53e-09,78;UBERON:0000486,9.71e-09,83;UBERON:0002097,1.15e-08,41;UBERON:0001134,1.18e-08,62;UBERON:0002036,1.18e-08,62;UBERON:0003082,1.18e-08,62;UBERON:0000479,2.16e-08,773;UBERON:0004121,4.11e-08,171;UBERON:0000924,4.11e-08,171;UBERON:0006601,4.11e-08,171;UBERON:0007023,3.88e-07,114;UBERON:0001013,6.51e-07,14 | |||
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|phase1_expression=150.429698036021,120.752695474514,100.500490120427,137.100418743789,35.756887554183,48.8509573496206,50.6599756336621,42.3252315195977,45.4462993067719,2.94880723801811,0,0.218441372130172,0,198.521230147915,85.8319203135302,10.0848771967766,9.64311244838363,14.6062018077475,10.2465887746006,7.1410213684537,2.65200898617529,1.25381888591235,5.15224776835902,2.6006140763848,4.3939923858181,1.29902789771517,0.903106483949403,1.18066171970519,0,0,3.40595471295367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44859552370032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0.196709770113833,0,0,0,0,0.473447805734733,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0,0,104.836952515004,16.0968206328873,8.18320395798594,48.7942855719164,128.342505122788,47.0751186622677,26.2444362526863,12.1658717575659,11.0605736081959,10.1995522832779,7.37812199822259,19.9743090134012,0.364295288292542,0,0,0,0.132957960518865,0,0,0,0,3.4409383804245,0,0,0,0,0.208994966536811,0,2.13459757612026,0.66944122552934,0,0,0.488124115096339,0,0,3.21479021822687,0.673588117878509,0.450445921933289,1.53316637465883,0.949265659568129,2.01521918323448,0,0,0,41.2486719907114,19.880990331339,7.28250494472703,137.107904717933,45.3975529213897,7.8494864019923,5.33744978648525,3.94668077467456,84.9606126641362,15.0875952718051,21.9038950172035,113.518070733699,130.21575893248,47.0986077985931,21.8512053781224,13.1208518955223,65.1596247205853,61.0659392947577,53.4180716414834,45.786962984933,199.86693365854,159.316109553363,291.895331821537,661.717591506104,197.319009564288,7.28129089550421,2.87447256726495,174.732886284321,113.857853083487,116.366928503357,140.472838681868,36.4720477000833,179.534480393383,8.73427810332162,499.241356122103,370.949184377852,274.663743902792,484.947211272394,286.795188870575,367.910691185158,248.466003202672,935.020880616615,572.052657301397,461.95380686673,366.174496799067,401.690451194748,664.222947598585,232.334338512938,188.720939241573,0,0,0.286804595389004,24.8826360504375,41.8794067895893,28.5837099459015,39.3912009058408,29.7738604033242,45.2571925254029,95.4342147211877,120.929296380262,27.6269842704961,201.071312837847,109.003801732107,0,0.168584690078102,0,0,0,0,0,0,0,0,0,8.231480226628,4.41026134156626,0,0.982827216677626,10.6342183202653,0,0,8.7499583252248,0,0,0.100528972411631,3.79612625149971,17.9194567920679,6.23960871167747,2.88662684050547,23.3020113999904,11.1538259524031,0,0,0,0,0,0,0,0,0,0.671928512795438,0,0.0895585227028483,0,0.766765358330422,0,0,0.621984346622316,0.144119953416961,0.50496973370552,3.42888629177713,0,0,11.9750712215894,5.96399457679276,0,2.5724378936752,15.8104828926959,22.6699235793306,21.8548091746431,11.2466392709267,32.1890801266694,15.215449546008,324.178564116957,191.373683916914,21.8626268122821,4.25547396069835,10.656887160644,477.403520824555,42.867106825924,13.9950857252731,30.2934651393174,355.391948742546,14.2551337128017,0,0.871533458600294,0.399891964728228,0,0,0,30.9116063584142,47.0933936919867,8.5582143024431,27.3636669601725,27.7393035443018,13.6086332062321,0,0,0,0.128343036279748,8.63921722356376,15.6167824629146,9.27946575333234,6.36561808270525,5.10351001322531,0,0,0,502.667041573316,173.059000286648,61.3058953561402,83.1883446123229,75.2970332724023,80.7436364973746,71.8076873905332,120.980332090543,27.2889004867182,45.5281513687022,87.6777790066776,46.2766613039675,271.598178827227,26.8247585723955,20.5886054286514,0,0,0,0,4.99306318531491,5.14063498660456,190.050580789183,479.568666525195,198.426686764183,68.8107231503114,321.35215241389,31.6882224652907,13.3576259800492,30.2250999853205,36.5777154145042,69.6438282997102,36.3478100428535,46.7165721409036,0.362578348774867,0,0,78.7627114409202,94.1411338594727,85.4931185535445,0,0.385076685522074,0,0,0.422206515571503,0,0.170093705276516,1.29549549661284,0,2.70946437543853,2.00675909541941,0,0,0,0,0,3.33385162651306,4.59220503979588,19.5227036798582,32.3548776573848,22.7092272749492,32.7562714684734,1.72279661398852,0.650060246036521,8.03419649220798,60.6125403691605,39.436445981349,36.687378259545,22.605197887463,147.273155714403,87.0100163485371,30.425905987548,73.5404614442051,0,0.192190067365106,0.127612712494584,0.10115778085555,3.253918845081,34.944170498201,6.970372701606,30.1872908572567,5.32306030317022,6.95946393660058,4.07713282028624,3.00562262158182,43.9146875844407,24.6775951280606,17.7286080349157,7.67693373934002,168.607961285365,32.7749345363715,0.78494864019923,266.570982138472,98.8333307049797,81.2905576185236,4.24583211303964,0,3.79132610615083,28.7703906062858,15.8413768260335,0,214.714360644762,49.209090319892,24.8617856564534,8.82184549673799,5.97095077717098,0.438450885253763,24.8873479734676,213.821689167202,0.608731130888112,7.435763954394,8.169172473435,33.1280223591359,28.5904709348183,1.07001315444375,80.1760004799551,90.7762831779956,117.228981893725,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| ||
|short_description=p1@PCDH18 | |short_description=p1@PCDH18 | ||
}} | }} |
Latest revision as of 05:17, 25 September 2015
Short description: | p1@PCDH18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PCDH18_5end |
Coexpression cluster: | C4371_Fibroblast_gastric_normal_Mesenchymal_Nucleus_Preadipocyte_mesenchymal |
Association with transcript: | 0bp_to_ENST00000344876, ENST00000412923, ENST00000507846, ENST00000510305, NM_019035, uc003ihe.3, uc003ihf.3, uc003ihg.3, uc011cgz.1, uc011cha.1_5end |
EntrezGene: | PCDH18 |
HGNC: | 14268 |
UniProt: | Q9HCL0D6RIG4B4DQ29 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.91e-23 | 76 |
skin fibroblast | 2.79e-13 | 23 |
fat cell | 3.65e-08 | 15 |
muscle precursor cell | 4.25e-08 | 58 |
myoblast | 4.25e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.25e-08 | 58 |
electrically responsive cell | 5.35e-08 | 61 |
electrically active cell | 5.35e-08 | 61 |
muscle cell | 1.43e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.64e-12 | 99 |
dense mesenchyme tissue | 9.43e-12 | 73 |
somite | 2.45e-11 | 71 |
presomitic mesoderm | 2.45e-11 | 71 |
presumptive segmental plate | 2.45e-11 | 71 |
dermomyotome | 2.45e-11 | 71 |
trunk paraxial mesoderm | 2.45e-11 | 71 |
paraxial mesoderm | 2.68e-11 | 72 |
presumptive paraxial mesoderm | 2.68e-11 | 72 |
integument | 3.28e-10 | 46 |
integumental system | 3.28e-10 | 46 |
structure with developmental contribution from neural crest | 1.79e-09 | 132 |
muscle tissue | 3.48e-09 | 64 |
musculature | 3.48e-09 | 64 |
musculature of body | 3.48e-09 | 64 |
epithelial vesicle | 3.53e-09 | 78 |
multilaminar epithelium | 9.71e-09 | 83 |
skin of body | 1.15e-08 | 41 |
skeletal muscle tissue | 1.18e-08 | 62 |
striated muscle tissue | 1.18e-08 | 62 |
myotome | 1.18e-08 | 62 |
tissue | 2.16e-08 | 773 |
ectoderm-derived structure | 4.11e-08 | 171 |
ectoderm | 4.11e-08 | 171 |
presumptive ectoderm | 4.11e-08 | 171 |
adult organism | 3.88e-07 | 114 |
adipose tissue | 6.51e-07 | 14 |