FFCP PHASE1:Hg19::chr7:100951567..100951611,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-9bp_to_uc003uyk.1_5end | |association_with_transcript=-9bp_to_uc003uyk.1_5end | ||
|cluster_id=chr7:100951567..100951611,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_1_at_uc003uyk.1_5end | |description=CAGE_peak_1_at_uc003uyk.1_5end | ||
|id=chr7:100951567..100951611,+ | |id=chr7:100951567..100951611,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.77e-40!254;CL:0002321!1.55e-15!248;CL:0000220!1.03e-14!246;CL:0000223!1.49e-13!59;CL:0002076!4.24e-11!43;CL:0002251!3.49e-07!21;CL:0000076!9.61e-07!62 | |ontology_enrichment_celltype=CL:0000066!1.77e-40!254;CL:0002321!1.55e-15!248;CL:0000220!1.03e-14!246;CL:0000223!1.49e-13!59;CL:0002076!4.24e-11!43;CL:0002251!3.49e-07!21;CL:0000076!9.61e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.15e-09;42!CL:0002251;4.91e-08;20!CL:0000039;6.60e-07;7!CL:0000586;6.60e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.61e-48,253;CL:0000223,3.75e-16,58;CL:0002321,5.49e-15,250;CL:0002076,1.21e-12,42;CL:0002251,4.67e-08,20;CL:0000076,2.43e-07,63;CL:0000039,6.64e-07,7;CL:0000586,6.64e-07,7;CL:1000449,9.06e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000223;3.45e-08;58 | |||
|ontology_enrichment_disease=DOID:305!5.75e-25!106;DOID:0050687!5.02e-22!143;DOID:162!1.25e-10!235;DOID:14566!4.87e-10!239;DOID:3095!1.80e-07!22;DOID:2994!1.80e-07!22 | |ontology_enrichment_disease=DOID:305!5.75e-25!106;DOID:0050687!5.02e-22!143;DOID:162!1.25e-10!235;DOID:14566!4.87e-10!239;DOID:3095!1.80e-07!22;DOID:2994!1.80e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:305;1.18e-09;106!DOID:3095;3.42e-09;22!DOID:2994;3.42e-09;22!DOID:1749;8.65e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.24e-31,106;DOID:0050687,2.52e-26,143;DOID:162,5.05e-15,235;DOID:14566,1.52e-14,239;DOID:3095,2.86e-09,22;DOID:2994,2.86e-09,22;DOID:1749,8.89e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.69e-18!169;UBERON:0000925!7.69e-18!169;UBERON:0006595!7.69e-18!169;UBERON:0003104!9.75e-18!238;UBERON:0009142!9.75e-18!238;UBERON:0001007!3.45e-16!155;UBERON:0001555!3.45e-16!155;UBERON:0007026!3.45e-16!155;UBERON:0004921!2.04e-15!129;UBERON:0004185!2.04e-15!129;UBERON:0000077!2.14e-14!130;UBERON:0001041!3.61e-13!98;UBERON:0000481!7.24e-13!347;UBERON:0002100!1.56e-10!216;UBERON:0005177!1.20e-09!107;UBERON:0000466!1.37e-09!126;UBERON:0001004!8.21e-09!72;UBERON:0008947!1.81e-08!38;UBERON:0003258!1.81e-08!38;UBERON:0000072!2.08e-08!46;UBERON:0001048!2.99e-08!168;UBERON:0000464!5.12e-08!104;UBERON:0000065!6.67e-08!53;UBERON:0005911!9.14e-08!82;UBERON:0006554!1.04e-07!44;UBERON:0001008!3.43e-07!45;UBERON:0000063!4.50e-07!97;UBERON:0000475!5.32e-07!365;UBERON:0000119!5.73e-07!312;UBERON:0001737!9.45e-07!9 | |ontology_enrichment_uberon=UBERON:0004119!7.69e-18!169;UBERON:0000925!7.69e-18!169;UBERON:0006595!7.69e-18!169;UBERON:0003104!9.75e-18!238;UBERON:0009142!9.75e-18!238;UBERON:0001007!3.45e-16!155;UBERON:0001555!3.45e-16!155;UBERON:0007026!3.45e-16!155;UBERON:0004921!2.04e-15!129;UBERON:0004185!2.04e-15!129;UBERON:0000077!2.14e-14!130;UBERON:0001041!3.61e-13!98;UBERON:0000481!7.24e-13!347;UBERON:0002100!1.56e-10!216;UBERON:0005177!1.20e-09!107;UBERON:0000466!1.37e-09!126;UBERON:0001004!8.21e-09!72;UBERON:0008947!1.81e-08!38;UBERON:0003258!1.81e-08!38;UBERON:0000072!2.08e-08!46;UBERON:0001048!2.99e-08!168;UBERON:0000464!5.12e-08!104;UBERON:0000065!6.67e-08!53;UBERON:0005911!9.14e-08!82;UBERON:0006554!1.04e-07!44;UBERON:0001008!3.43e-07!45;UBERON:0000063!4.50e-07!97;UBERON:0000475!5.32e-07!365;UBERON:0000119!5.73e-07!312;UBERON:0001737!9.45e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;6.72e-09;30!UBERON:0001008;6.72e-09;30!UBERON:0000072;1.22e-08;37!UBERON:0005911;7.98e-08;36!UBERON:0001737;1.03e-07;9!UBERON:0001557;1.03e-07;9!UBERON:0002113;1.04e-07;24!UBERON:0011143;1.04e-07;24!UBERON:0000065;1.70e-07;44!UBERON:0004807;5.00e-07;22 | |||
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|phase1_expression=0.181678379270557,1.07050261945492,0,0,0.446961094427288,0,0,2.52687949370732,0.261185628199839,10.5665592695649,6.97801167972428,4.36882744260345,1.84636884759917,1.36142988256051,0.662794751455832,0,0.602694528023977,0.730310090387373,0,3.69363174230364,1.42800483870977,0,1.71741592278634,3.69560947696787,2.76193807108566,5.34893840235659,5.91124244039609,6.53299484903538,0,0,0,11.0330546937471,10.5422071572388,5.17655614233503,0,0,0.880801318004542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0.574752439954483,0,0,0,0.587237189370939,0,1.32171328579026,0.560508562981536,2.10707267820062,0.196709770113833,0,0,1.67186495390678,0,1.89379122293893,0,0.779873198196215,0,1.10766947291811,0,0.768547918354051,0.260118695119756,0.986627427622057,0,0,0,1.07016331235885,0,0.453237370790265,0.383220493601921,1.03088233644789,0,0,2.60433381542567,0,0.602300476311091,0.383959833463255,0,0,0,0,0,0,2.43806866313962,2.01210257911091,1.66221330396589,0,0,0.579386075843295,0.795285947051099,0,1.51255707462509,2.66075276955077,1.58102614247627,1.24430121722827,9.10738220731355,8.15725774125745,0,0,0,0,0,0,4.17401055470081,3.4409383804245,2.42998351125316,2.82653970962005,2.93649605346934,6.87795104850169,5.8518590630307,0,0.35576626268671,0,1.61131726843659,0,0.24406205754817,9.55924008899259,3.24056779152704,2.32179293538607,1.79623498100936,5.74318550464943,3.06633274931766,0.949265659568129,3.11442964681692,0,0,6.97750483428055,0,1.39293562831038,0.264818361626438,0.286836620748814,0.709336764396714,0,4.2699598291882,0.24666754841716,0.311211035399766,1.21239604862719,0.653847612453835,0,0,1.64025002283658,11.8620829195522,5.70471821544449,7.47243402759005,9.0424563955699,7.12240955219779,7.16299114181467,2.65400422631361,8.22989925988845,2.06651562351531,0,0,5.46096817162816,2.15585442544872,4.37673896280572,7.25687415257392,1.10825646193673,0.438977620880838,0,0.300476117813194,3.06266894532057,0,0,1.05965950579781,0.300091096084402,0.206105058476878,0.257640540045629,0.18611685633159,0.337552664482532,0.389748020644795,0.252433774244115,0.184099797284599,0.969876340912871,0.355009592516614,0.10075209822764,1.3564847384839,4.25173876959253,5.18217629122586,5.73609190778008,56.3518522318731,34.5902695319077,37.0658677753764,29.1287564593191,44.6607906049862,39.0525774211138,0,0,0,4.17931135228781,2.16563844500876,18.4558608062156,18.7129005986693,17.5938051814942,16.2132139916619,16.7767171951153,18.9816495288877,12.1348177344148,10.5959591167687,13.8508976500701,0,4.20725321410337,2.8810180793198,0,0,7.86261773342101,4.13552934676983,0,12.7907976084838,4.46076306776166,5.48751427043128,10.1161577931858,8.04231779293047,12.59202854156,3.58389135841357,7.27954349695705,2.88662684050547,1.39116485970092,0.939269553886573,0.144366447761074,0,0.190254152234598,3.1608175918371,3.43394464837949,0,0,0,10.3107217385455,0.671928512795438,7.51408015384648,2.23896306757121,2.3250715081117,4.21720947081732,0,0,0,0,0,2.15892840593375,0.763976851116555,1.17217447210047,3.4214489204541,4.52440967894623,7.80891950394185,3.14409075893636,3.92458795208763,0.87192013766656,2.56684000373325,0.904902010304444,3.57656445851882,12.67954128834,0,0,5.14414748524284,2.83698264046557,6.66055447540248,0.142977993658148,1.08524321078289,3.29296134712308,6.18898750158097,0.355391948742546,11.8792780940014,0,0,0.699810938274399,0,0,0,0,0,0,0.723906533337896,2.87666851570537,1.07436577943937,0,0,0,0.128343036279748,0,0,0.773288812777695,0.335032530668698,0,0,0,0,2.69921281782108,0.500170521059677,1.62759014219841,0,0.356857977594324,0,0.234282829985426,0,0,0,0,0.553107505625109,0.521301686808497,1.37060810223918,0,0,0,0.213455115606889,1.21251028578504,0,0.907170879989041,0,0,0.280660094433074,0,0,0.160853921143607,0,5.08891989548763,1.06537035187876,0.98552587216571,1.03850885836724,2.09178681227927,12.9319611063036,1.20303882181971,6.35358823657685,1.83703117063371,0.910455840033585,0.524497659837696,11.7311899355927,3.61972084390749,9.41219723012226,5.84556898613043,1.68882606228601,2.27466768141793,1.53084334748864,5.61381381865562,3.08454505380579,5.96082162596476,6.52196706011309,14.5279475635672,8.31076008928724,9.17886494360931,0,0,7.1806035032589,6.23227826829441,7.15832468261467,2.57602529119306,0,0.082509499920588,6.3169209179579,8.45078319847478,0,1.25671933779759,6.932187770159,7.67518373630648,7.02966519671106,3.54486808065303,4.0604674295984,5.45450415463046,0.445160178233687,2.14870389969272,3.65161127993702,4.97689578728878,1.92199783625545,0.929691098594572,0,1.3940745403212,1.23213432070436,0.532306030317022,1.73986598415015,0.18532421910392,0.286249773483982,0.744316738719335,0.949138274156178,1.33441135746677,0.767693373934002,0,0.95460974377781,0,1.97859703341646,2.19629623788844,1.41374882814824,0.404364963146632,0,0.842516912477962,6.33923860816467,0.243713489631284,0,0.409499734223957,0.424216295861138,0,0,0,0,4.0514287398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| ||
|short_description=p1@uc003uyk.1 | |short_description=p1@uc003uyk.1 | ||
}} | }} |
Latest revision as of 04:23, 31 July 2015
Short description: | p1@uc003uyk.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc003uyk.1_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -9bp_to_uc003uyk.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.61e-48 | 253 |
endodermal cell | 3.75e-16 | 58 |
embryonic cell | 5.49e-15 | 250 |
endo-epithelial cell | 1.21e-12 | 42 |
epithelial cell of alimentary canal | 4.67e-08 | 20 |
squamous epithelial cell | 2.43e-07 | 63 |
germ line cell | 6.64e-07 | 7 |
germ cell | 6.64e-07 | 7 |
epithelial cell of nephron | 9.06e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.16e-13 | 160 |
endoderm | 3.16e-13 | 160 |
presumptive endoderm | 3.16e-13 | 160 |
digestive system | 2.33e-12 | 145 |
digestive tract | 2.33e-12 | 145 |
primitive gut | 2.33e-12 | 145 |
foregut | 8.28e-12 | 87 |
subdivision of digestive tract | 1.28e-11 | 118 |
trunk region element | 6.74e-11 | 101 |
respiratory primordium | 7.65e-10 | 38 |
endoderm of foregut | 7.65e-10 | 38 |
trunk | 4.20e-09 | 199 |
respiratory system | 5.61e-09 | 74 |
segment of respiratory tract | 2.78e-08 | 47 |
respiratory tract | 7.26e-08 | 54 |
endo-epithelium | 8.27e-08 | 82 |
larynx | 1.02e-07 | 9 |
kidney | 8.09e-07 | 26 |
kidney mesenchyme | 8.09e-07 | 26 |
upper urinary tract | 8.09e-07 | 26 |
kidney rudiment | 8.09e-07 | 26 |
kidney field | 8.09e-07 | 26 |
subdivision of trunk | 8.10e-07 | 112 |
nephron epithelium | 9.06e-07 | 15 |
renal tubule | 9.06e-07 | 15 |
nephron tubule | 9.06e-07 | 15 |
nephron | 9.06e-07 | 15 |
uriniferous tubule | 9.06e-07 | 15 |
nephrogenic mesenchyme | 9.06e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.24e-31 | 106 |
cell type cancer | 2.52e-26 | 143 |
cancer | 5.05e-15 | 235 |
disease of cellular proliferation | 1.52e-14 | 239 |
germ cell and embryonal cancer | 2.86e-09 | 22 |
germ cell cancer | 2.86e-09 | 22 |
squamous cell carcinoma | 8.89e-07 | 14 |