FFCP PHASE1:Hg19::chr9:101984719..101984730,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10952 | |EntrezGene=10952 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=16993 | |HGNC=16993 | ||
|TSSclassifier=strong | |||
|UniProt=P60468 | |UniProt=P60468 | ||
|association_with_transcript=-96bp_to_CR456883,CR542159_5end | |association_with_transcript=-96bp_to_CR456883,CR542159_5end | ||
|cluster_id=chr9:101984719..101984730,+ | |||
|coexpression_cluster_id=C44 | |coexpression_cluster_id=C44 | ||
|description=CAGE_peak_3_at_SEC61B_5end | |description=CAGE_peak_3_at_SEC61B_5end | ||
|id=chr9:101984719..101984730,+ | |id=chr9:101984719..101984730,+ | ||
|ontology_enrichment_celltype=CL:0000034!1.17e-18!444;CL:0000723!7.41e-18!436;CL:0000048!1.74e-17!430;CL:0000144!1.19e-15!625;CL:0000012!3.26e-14!682;CL:0002371!3.53e-14!591;CL:0000548!4.20e-13!679;CL:0000004!4.20e-13!679;CL:0000255!4.20e-13!679;CL:0000134!1.38e-11!358;CL:0002320!1.45e-11!365;CL:0000057!2.91e-09!75;CL:0000219!2.34e-08!390;CL:0000055!2.33e-07!180;CL:0000003!2.75e-07!722;CL:0000063!3.34e-07!578;CL:0000451!4.19e-07!10;CL:0002334!5.34e-07!12 | |ontology_enrichment_celltype=CL:0000034!1.17e-18!444;CL:0000723!7.41e-18!436;CL:0000048!1.74e-17!430;CL:0000144!1.19e-15!625;CL:0000012!3.26e-14!682;CL:0002371!3.53e-14!591;CL:0000548!4.20e-13!679;CL:0000004!4.20e-13!679;CL:0000255!4.20e-13!679;CL:0000134!1.38e-11!358;CL:0002320!1.45e-11!365;CL:0000057!2.91e-09!75;CL:0000219!2.34e-08!390;CL:0000055!2.33e-07!180;CL:0000003!2.75e-07!722;CL:0000063!3.34e-07!578;CL:0000451!4.19e-07!10;CL:0002334!5.34e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000451;5.21e-16;10!CL:0000990;1.05e-11;8!CL:0000453;2.33e-11;5!CL:0000784;1.17e-08;3!CL:0002615;8.31e-08;3!CL:0000226;6.27e-07;3!CL:0000842;6.27e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000451,4.52e-16,10;CL:0000990,9.13e-12,8;CL:0000453,1.18e-11,5;CL:0000034,4.00e-10,441;CL:0000134,7.91e-10,354;CL:0000723,2.20e-09,433;CL:0002320,2.43e-09,361;CL:0000048,3.22e-09,427;CL:0000784,1.20e-08,3;CL:0000136,2.28e-08,15;CL:0000219,1.20e-07,386;CL:0002615,1.97e-07,3;CL:0000226,8.50e-07,3;CL:0000842,8.50e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!7.07e-12!375;UBERON:0002204!4.77e-07!167 | |ontology_enrichment_uberon=UBERON:0002384!7.07e-12!375;UBERON:0002204!4.77e-07!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;9.18e-09;14!UBERON:0002390;1.90e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.30e-09,371;UBERON:0001013,5.72e-09,14 | |||
|phase1_expression=0.908391896352783,0.856402095563933,2.39622486963151,1.0007329835313,3.5756887554183,2.61701557230111,2.53299878168311,0.631719873426831,0,0.245733936501509,0.697801167972428,0.218441372130172,0,0.37129905888014,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0.123121058076788,0,0,0,0,0,0,0,0.157421562627358,0.393364276848904,0,1.39334510984468,0.919421224478927,0.6024118375565,0,0.154934401160603,0,1.17440175733939,1.10799081706375,0.200544447470142,1.30206522429511,0,0,0,0.290796477559129,0.377875943688809,0.242584061187816,0,0,0,0,0.512321413058201,0.709446689665756,0,0.645484683583826,0,0,0,0.449446968890169,0.918251677112708,0.962787081228281,0.639337125799041,0.329851300186716,0.199463657621632,0.426224750532694,0.290209238628584,0.56738522469114,0.622822248995575,0.502497330513487,0,0.434377689410233,0.605399502633369,0.368277635987565,0.949387162322653,0.211255286311942,1.06302149982522,0.209658645508376,0.561643155732475,0,0.16072558669708,0.285012743741249,0.19891667719909,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,1.1384259382189,1.17447437874188,1.52909291250092,3.96513985737078,1.68152568894461,0.263384084775077,0.196709770113833,0.393010762749165,1.02800749499755,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.403213486449465,0.267440195783507,0.434473211648397,0,0,0.895037932904712,0.361439152384566,0,0.724232594804119,0,0.973269740605272,0.283604451492204,0.443458794925128,0.527008714158756,0.196468613246569,0.364295288292542,0.370784442784429,0.324547393654683,0.348259474598534,1.06366368415092,52.4679373471752,57.1994910780128,71.691297756606,0.198762407366705,0,0,0.56530794192401,0.419499436209906,0.550236083880135,0.208994966536811,0.516833518338658,0,0,0.402829317109147,0,0.24406205754817,1.10298924103761,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0,0,0,0,0,0.496971951695318,0.633152558322899,0.794455084879313,0.860509862246441,0,0.560677600142307,0,1.48000529050296,0.622422070799533,0.269421344139376,0.326923806226917,0.605429710579726,0,0.234321431833797,0.936480230490962,1.1409436430889,0.448346041655403,0,0.323745888736263,0.140450806702248,0,0.122834317311768,0.206651562351531,1.18800285728205,0.494533858557114,0,0.718618141816238,0.505008341862199,0.375355559615893,0,0,0.612975591598039,0.300476117813194,0.680593098960126,0.358779271377724,0.213557388818567,0.847727604638247,0.600182192168805,0.618315175430633,0,0.18611685633159,0.337552664482532,1.07180705677318,0.757301322732344,0.460249493211497,0.646584227275248,0.355009592516614,0.906768884048762,0.67824236924195,0.57978255948989,0.272746120590835,0,0.121973706129595,0.132529768321485,0.348581828608555,0.10366105501537,0,0,0,0,0,0,1.44375896333917,0.354920400119532,0.168584690078102,0.241011029883482,0.110293972732394,0.435758888184812,0,0.269662616320329,0.196221465125346,0.769494313892781,0.738155454624648,0,1.2347220339942,1.47008711385542,0,0,0,0.441463099414651,0,0.171567810298526,0.329250856225877,1.1240175325762,0.100528972411631,0.0925884451585296,0,1.03993478527958,0,0,0.469634776943287,0.144366447761074,0.462985512576611,0,0,0,0,0.234004265139238,0.148631162288728,3.74935335947108,0.671928512795438,0.141775097242386,0.268675568108545,0.581267877027924,0,0.492663237895943,0.352193736052904,0.414656231081544,0.144119953416961,0.25248486685276,0.952468414382536,0,0,0,0.205654985406647,0,0.285826432630578,0.224262168690721,0,0.1466765716419,1.16344544182,0,0,1.32969058292435,0,0.771622122786426,2.83698264046557,1.0656887160644,1.00084595560703,1.62786481617433,0,0.65147236858747,1.06617584622764,0,0.602878754119172,0,0.299918973546171,0,1.00451418286425,0,0.479249710983165,0,0,1.15825045334063,0.410952645100767,0.537182889719687,0,0.394061520403854,0.646882724578552,0.385029108839245,0.508189248444927,2.60279707715243,0.773288812777695,0,1.27587750330633,0,0,0,0.24538298343828,0,0,1.24782516918484,0.356857977594324,0.630809660135739,0.585707074963566,0.902838299183157,0,0,0,0,0.434418072340414,0,0.686286847621712,1.03384013061444,1.2942852049117,1.28073069364133,0.606255142892519,0,0.604780586659361,0.744323423456331,0.61384789315225,0.841980283299221,1.02511319404561,0.511707249066704,0.965123526861645,1.48418066444991,1.23367755042124,2.84098760501003,0.821271560138091,1.03850885836724,1.62694529843943,0,0.802025881213139,0,0.459257792658427,0.364182336013434,0.524497659837696,0,0,0,0,0,0,0,0.431831832204279,1.54227252690289,0.541892875087706,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0.650060246036521,0,0.096670718292122,0.462145851343933,0.921022048356777,0.413509717453592,0.429680979473094,0.435050081742686,0.255679882248303,0.267096106940212,0.661139661443912,0.192190067365106,0.127612712494584,0.30347334256665,0,0.31481234683064,0.6970372701606,0,3.19383618190213,0,0.18532421910392,0.286249773483982,0,19.9319037572797,0.190630193923825,0.5117955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| ||
|short_description=p3@SEC61B | |short_description=p3@SEC61B | ||
}} | }} |
Latest revision as of 20:00, 19 September 2015
Short description: | p3@SEC61B |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SEC61B_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | -96bp_to_CR456883, CR542159_5end |
EntrezGene: | SEC61B |
HGNC: | 16993 |
UniProt: | P60468 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
dendritic cell | 4.52e-16 | 10 |
conventional dendritic cell | 9.13e-12 | 8 |
Langerhans cell | 1.18e-11 | 5 |
stem cell | 4.00e-10 | 441 |
mesenchymal cell | 7.91e-10 | 354 |
somatic stem cell | 2.20e-09 | 433 |
connective tissue cell | 2.43e-09 | 361 |
multi fate stem cell | 3.22e-09 | 427 |
plasmacytoid dendritic cell | 1.20e-08 | 3 |
fat cell | 2.28e-08 | 15 |
motile cell | 1.20e-07 | 386 |
adipocyte of omentum tissue | 1.97e-07 | 3 |
single nucleate cell | 8.50e-07 | 3 |
mononuclear cell | 8.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.30e-09 | 371 |
adipose tissue | 5.72e-09 | 14 |