FFCP PHASE1:Hg19::chr19:55865298..55865350,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:55865298..55865350,-
|short_description=p@chr19:55865298..55865350,-
|description=CAGE_peak_at_chr19:55865298..55865350,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:55865298..55865350,- | |||
|description=CAGE_peak_at_chr19:55865298..55865350,- | |||
|id=chr19:55865298..55865350,- | |||
|ontology_enrichment_celltype=CL:0000066!6.58e-14!254;CL:0002076!1.65e-10!43;CL:1000507!7.15e-07!12;CL:1000494!7.15e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.37e-10;10!CL:1000494;1.37e-10;10!CL:0002322;3.96e-10;5!CL:1000497;5.24e-09;17!CL:0002518;5.24e-09;17!CL:1000449;2.30e-08;15!CL:0002368;1.19e-07;13!CL:0002076;5.66e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.47e-20,253;CL:1000507,1.91e-10,10;CL:1000494,1.91e-10,10;CL:0002322,3.63e-10,5;CL:1000497,6.17e-09,17;CL:0002518,6.17e-09,17;CL:0002076,2.02e-08,42;CL:1000449,2.71e-08,15;CL:0002368,1.11e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!9.97e-11!14;DOID:305!4.75e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.64e-19;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.27e-19,14;DOID:305,2.27e-12,106;DOID:0050687,1.18e-09,143;DOID:162,7.82e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0001008!6.47e-10!45;UBERON:0006554!1.55e-09!44;UBERON:0005177!1.94e-08!107;UBERON:0000489!2.04e-08!32;UBERON:0003064!2.13e-08!37;UBERON:0004119!1.24e-07!169;UBERON:0000925!1.24e-07!169;UBERON:0006595!1.24e-07!169;UBERON:0009773!7.15e-07!12;UBERON:0001231!7.15e-07!12;UBERON:0004810!7.15e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.37e-10;10!UBERON:0009773;1.37e-10;10!UBERON:0001231;1.37e-10;10!UBERON:0004810;1.37e-10;10!UBERON:0006554;2.77e-10;30!UBERON:0001008;2.77e-10;30!UBERON:0000489;2.50e-09;29!UBERON:0006555;2.30e-08;15!UBERON:0004819;2.30e-08;15!UBERON:0001285;2.30e-08;15!UBERON:0007684;2.30e-08;15!UBERON:0002113;3.44e-07;24!UBERON:0011143;3.44e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,7.72e-11,47;UBERON:0001008,1.67e-10,48;UBERON:0004810,1.91e-10,10;UBERON:0000489,1.83e-08,31;UBERON:0004211,2.71e-08,15;UBERON:0009773,2.71e-08,15;UBERON:0001231,2.71e-08,15;UBERON:0001285,2.71e-08,15;UBERON:0007684,2.71e-08,15;UBERON:0004208,2.71e-08,15;UBERON:0004119,6.05e-08,160;UBERON:0000925,6.05e-08,160;UBERON:0006595,6.05e-08,160;UBERON:0006555,1.15e-07,16;UBERON:0004819,1.15e-07,16;UBERON:0005631,1.68e-07,14;UBERON:0000158,1.68e-07,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.79120467188971,1.52908960491121,7.12170841216825,0.74259811776028,0.994192127183747,0,0,0,0,0.61560529038394,0,0,0,0.410623275218653,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,2.21852406100073,0,0,0,0,0,0,0.223915474239924,0.32389366601898,0,0.145398238779565,0,0.242584061187816,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0.449446968890169,0,0,0.639337125799041,0,0.199463657621632,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616804496998528,0,0,0,0,0.222820913770347,0.589211814949674,0,0.270803863765016,0.128091319725675,0.390178042679635,0,0,0,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0,0,1.34140171940727,0,0,0,0,0,0,0.189069634328136,0.886917589850256,0.351339142772504,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0.454072282934794,0,0.234321431833797,0,0,0,0.117434498643765,0,0.140450806702248,0.204154171254893,0,0,1.18800285728205,0,0,0,0,0.125118519871964,0,0,0,0,0.226864366320042,0.179389635688862,0,0,0,0,0,0,0,0.0974370051611986,0,0,0.323292113637624,0,0,0.169560592310488,0.386521706326594,1.90922284413584,0.860413786167011,3.41526377162867,7.1566074893602,3.71820617182459,2.07322110030741,2.77552935963191,8.39447925874409,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0.122988438543114,0,0.219500570817251,0,0,0.925884451585296,0.325808305310325,0,0,0.463721619900307,0,0.144366447761074,0,0,0,0,0,0,0,0,6.88726725615324,4.82035330624114,4.92571874865666,4.35950907770943,0.766765358330422,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0.285826432630578,0.112131084345361,0.43596006883328,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.197030760201927,0.215627574859517,0,0,0,0,0.670065061337395,0,0,0,0.414415513436035,0.24538298343828,1.50051156317903,0.271265023699736,0.207970861530807,0,0,0.117141414992713,0,0,1.03473071292505,0.664225598535437,0,0,0.195801157462741,0.343143423810856,0,0,0.106727557803444,2.42502057157008,6.65741758041988,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0.40101294060657,10.4972327386922,0,0,0.131124414959424,1.80479845162965,0.616122696835318,3.13739907670742,2.92278449306521,0.949964660035881,0,0,0,0,1.08378575017541,3.01013864312912,1.01950509218015,3.3243040357149,1.34324852833307,0.657779629937804,0.261435451024901,0.769350375349168,0.656029291399411,0.976135183992909,0,1.37354197227515,1.15513299888823,0,0,0,0.193341436584244,0,0.307007349452259,0.137836572484531,0.107420244868274,0,0,0,1.65284915360978,1.72971060628596,1.14851441245126,1.51736671283325,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0.855877976067841,0,0,0.179872457583315,0,0,0,0,0.421258456238981,0.975267478179181,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0,0,0,0.589494246078727,0,0,0.211107635297664,0.329294892959902,0.379473173765715,0,0.865999014529609,2.68120910214315,1.08890984861323,0.188287601553558,1.72202149068492,0,0.443430153536676,1.1486170010348,0,0,0,0,0.411362273086194,0.648473311192717,0.540031437238115,0,5.23437948524618,0,4.90080431962063,0,0,0,0.318852545457645,0,0,0,0,0,0,0,0,0,0,0,0,1.71752672377882,0,0.447352215784832,0.333698283423817,0,0,0,1.08182271390393,0,0,1.8714054040822,0,0.242721043499027,0.66866030566487,0,5.25237866422918,0.296964680832639,1.53580351049616,0,0.140669416410513,0,10.8770556989661,5.48926061132783,0.19924798825107,0.276283915531148,0,0.20453736500431,0,0,3.41499734359842,9.48812225780729,0,1.57829449019094,0,0,0,0.0927680981618513,0,0,0,0,0.227586896570999,8.64462410995405,0.236387681767936,2.41320361269025,0,0,0,0.120596438625408,0,0.110579259931225,0,0.219385397153973,0,0.41827123283581,0.153900517007594,0.227884111694002,0.23056390438806,0,0,1.5950057986596,0.824378340616761,0,0,0.156980256395025,0.332423363800313,0.451191321234361,1.17637520590644,0.839107934879214,0.37950746544837,3.97341447450947,0,0,0.141353071433941,0,6.96683351754953,1.32686346755009,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0.91821828489147,0.126373159256976,0.450970258243478,0.622129148383483,0,0,0,0,0.284609546029793,0,0.173559738335131,24.5960917510088,5.48473001456536,0.17472666824203,2.40780445460263,0.19351266257817,0.146178634172371,0.410577285266046,0.775912131907355,0.617792886840502,0.677942222341597,0.822251547880505,0,0.0633107959558787,0.977756913674015,15.7912875895521,0.213452994739353,2.19790570540343,0.144090417154106,0,0,5.76219191952599,0,9.66345541928861,3.26170094576674,3.03348254305766,0,0.288950589901519,0,0.410716136675979,0,0,0,0,0,0,0,0,0.446342914883745,0.268733889946905,0,0,0,0,0,0.0984274815147488,0,0,0,2.25054407851027,2.33817042215297,2.07720169014593,0.2249738915515,0,0,2.34804281319486,0,0.314727528809989,0,0,22.83790848101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| ||
|short_description=p@chr19:55865298..55865350,- | |||
}} | }} |
Latest revision as of 17:28, 27 July 2015
Short description: | p@chr19:55865298..55865350, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:55865298..55865350, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.47e-20 | 253 |
kidney tubule cell | 1.91e-10 | 10 |
nephron tubule epithelial cell | 1.91e-10 | 10 |
embryonic stem cell | 3.63e-10 | 5 |
kidney cell | 6.17e-09 | 17 |
kidney epithelial cell | 6.17e-09 | 17 |
endo-epithelial cell | 2.02e-08 | 42 |
epithelial cell of nephron | 2.71e-08 | 15 |
respiratory epithelial cell | 1.11e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 7.72e-11 | 47 |
renal system | 1.67e-10 | 48 |
nephron tubule epithelium | 1.91e-10 | 10 |
cavitated compound organ | 1.83e-08 | 31 |
nephron epithelium | 2.71e-08 | 15 |
renal tubule | 2.71e-08 | 15 |
nephron tubule | 2.71e-08 | 15 |
nephron | 2.71e-08 | 15 |
uriniferous tubule | 2.71e-08 | 15 |
nephrogenic mesenchyme | 2.71e-08 | 15 |
endoderm-derived structure | 6.05e-08 | 160 |
endoderm | 6.05e-08 | 160 |
presumptive endoderm | 6.05e-08 | 160 |
excretory tube | 1.15e-07 | 16 |
kidney epithelium | 1.15e-07 | 16 |
extraembryonic membrane | 1.68e-07 | 14 |
membranous layer | 1.68e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.27e-19 | 14 |
carcinoma | 2.27e-12 | 106 |
cell type cancer | 1.18e-09 | 143 |
cancer | 7.82e-07 | 235 |