FFCP PHASE1:Hg19::chr19:55877364..55877367,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:55877364..55877367,-
|short_description=p@chr19:55877364..55877367,-
|description=CAGE_peak_at_chr19:55877364..55877367,-
|association_with_transcript=NA
...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:55877364..55877367,- | |||
|description=CAGE_peak_at_chr19:55877364..55877367,- | |||
|id=chr19:55877364..55877367,- | |||
|ontology_enrichment_celltype=CL:0000359!1.14e-20!32;CL:0000192!1.09e-18!42;CL:0000514!1.09e-18!42;CL:0002595!8.69e-16!5;CL:0000187!4.49e-15!54;CL:0000680!5.15e-14!57;CL:0000056!5.15e-14!57;CL:0000355!5.15e-14!57;CL:0000183!2.27e-13!59;CL:0000393!4.60e-13!60;CL:0000211!4.60e-13!60;CL:0002539!1.35e-10!10;CL:0000055!1.50e-09!180;CL:0002593!2.70e-07!2;CL:0002589!7.15e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002595;1.89e-36;5!CL:0000359;4.79e-15;32!CL:0002593;1.82e-11;2!CL:0002596;2.60e-11;2!CL:0000047;3.70e-11;2!CL:0000192;4.37e-09;43!CL:0002592;5.73e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,2.00e-36,5;CL:0000359,1.01e-15,32;CL:0000192,9.69e-12,43;CL:0000514,9.69e-12,43;CL:0002593,1.82e-11,2;CL:0002596,2.73e-11,2;CL:0000187,3.35e-09,55;CL:0000680,9.95e-09,58;CL:0000056,9.95e-09,58;CL:0000355,9.95e-09,58;CL:0000393,2.66e-08,61;CL:0000211,2.66e-08,61;CL:0002592,5.54e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000514;4.37e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004573!1.04e-22!33;UBERON:0004571!1.04e-22!33;UBERON:0001637!5.48e-19!42;UBERON:0003509!5.48e-19!42;UBERON:0004572!5.48e-19!42;UBERON:0003834!8.69e-16!5;UBERON:0001533!8.69e-16!5;UBERON:0003513!1.58e-13!8;UBERON:0001981!2.33e-13!60;UBERON:0007500!2.33e-13!60;UBERON:0004537!2.33e-13!60;UBERON:0006965!2.33e-13!60;UBERON:0001134!9.08e-13!61;UBERON:0002036!9.08e-13!61;UBERON:0003082!9.08e-13!61;UBERON:0002385!3.31e-12!63;UBERON:0001015!3.31e-12!63;UBERON:0000383!3.31e-12!63;UBERON:0001135!2.16e-11!15;UBERON:0002049!2.95e-11!79;UBERON:0007798!2.95e-11!79;UBERON:0003914!4.61e-11!118;UBERON:0000055!5.71e-11!69;UBERON:0004237!1.35e-10!10;UBERON:0004695!1.35e-10!10;UBERON:0002111!1.35e-10!10;UBERON:0004178!1.35e-10!10;UBERON:0004290!1.68e-10!70;UBERON:0000486!2.26e-10!82;UBERON:0000914!2.30e-10!83;UBERON:0002329!2.30e-10!83;UBERON:0003077!2.30e-10!83;UBERON:0003059!2.30e-10!83;UBERON:0007282!2.30e-10!83;UBERON:0009618!2.30e-10!83;UBERON:0007285!2.30e-10!83;UBERON:0004872!2.42e-10!84;UBERON:0005256!1.46e-08!143;UBERON:0004535!2.37e-08!110;UBERON:0001009!5.55e-08!113;UBERON:0000947!5.67e-08!21;UBERON:0010191!5.67e-08!21;UBERON:0000490!1.25e-07!138;UBERON:0002119!1.94e-07!4;UBERON:0004531!1.94e-07!4;UBERON:0002456!2.70e-07!2;UBERON:0000025!5.84e-07!194;UBERON:0001529!7.15e-07!2;UBERON:0007204!7.15e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;1.89e-36;5!UBERON:0001533;1.89e-36;5!UBERON:0003513;2.79e-26;7!UBERON:0004573;5.10e-14;33!UBERON:0004571;5.10e-14;33!UBERON:0002456;1.82e-11;2!UBERON:0005396;2.60e-11;2!UBERON:0001637;1.58e-09;42!UBERON:0003509;1.58e-09;42!UBERON:0004572;1.58e-09;42!UBERON:0003498;5.73e-08;3!UBERON:0005985;5.73e-08;3!UBERON:0001621;5.73e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,2.00e-36,5;UBERON:0001533,2.00e-36,5;UBERON:0003513,2.91e-26,7;UBERON:0004573,2.99e-15,33;UBERON:0004571,2.99e-15,33;UBERON:0001637,5.13e-12,42;UBERON:0003509,5.13e-12,42;UBERON:0004572,5.13e-12,42;UBERON:0002456,1.82e-11,2;UBERON:0005396,2.73e-11,2;UBERON:0007500,1.40e-08,59;UBERON:0001981,1.40e-08,59;UBERON:0004537,1.40e-08,59;UBERON:0006965,1.40e-08,59;UBERON:0001134,3.61e-08,62;UBERON:0002036,3.61e-08,62;UBERON:0003082,3.61e-08,62;UBERON:0001621,5.54e-08,3;UBERON:0002385,6.47e-08,64;UBERON:0001015,6.47e-08,64;UBERON:0000383,6.47e-08,64;UBERON:0000055,1.88e-07,68;UBERON:0002329,3.87e-07,71;UBERON:0003059,3.87e-07,71;UBERON:0007282,3.87e-07,71;UBERON:0004290,3.87e-07,71;UBERON:0009618,3.87e-07,71;UBERON:0003077,4.86e-07,72;UBERON:0007285,4.86e-07,72;UBERON:0007524,6.06e-07,73 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,3.89307896242109,0,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573673241497627,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0,0,0,0,0,1.05166641234618,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0.308419387605311,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0.231046011313244,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0.929691098594572,0,0.6970372701606,0,0,0,0.37064843820784,0.429374660225974,0,0,0,0,0,0,2.35484592059769,0.179872457583315,0,0.117812402345686,0,0,2.94880919367287,0,0.487426979262569,15.8475220135133,0,0,0,0.551365343546124,1.32687795048244,3.06915619677634,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0.443565449968902,0.318593534327405,1.34940933649081,0.621051827505038,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0,0,0,0,0.672325146451775,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,3.89307896242109,0,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573673241497627,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741800787835671,0,0,0,0,0,0,0,1.05166641234618,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44331342025273,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0,0,0,0,0,0,0,0.207970861530807,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0.308419387605311,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0.231046011313244,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0.929691098594572,0,0.6970372701606,0,0,0,0.37064843820784,0.429374660225974,0,0,0,0,0,0,2.35484592059769,0.179872457583315,0,0.117812402345686,0,0,2.94880919367287,0,0.487426979262569,15.8475220135133,0,0,0,0.551365343546124,1.32687795048244,3.06915619677634,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0.443565449968902,0.318593534327405,1.34940933649081,0.621051827505038,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:55877364..55877367,- | |||
}} | }} |
Latest revision as of 17:28, 27 July 2015
Short description: | p@chr19:55877364..55877367, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:55877364..55877367, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 2.00e-36 | 5 |
vascular associated smooth muscle cell | 1.01e-15 | 32 |
smooth muscle cell | 9.69e-12 | 43 |
smooth muscle myoblast | 9.69e-12 | 43 |
smooth muscle cell of the internal thoracic artery | 1.82e-11 | 2 |
smooth muscle cell of the carotid artery | 2.73e-11 | 2 |
muscle cell | 3.35e-09 | 55 |
muscle precursor cell | 9.95e-09 | 58 |
myoblast | 9.95e-09 | 58 |
multi-potent skeletal muscle stem cell | 9.95e-09 | 58 |
electrically responsive cell | 2.66e-08 | 61 |
electrically active cell | 2.66e-08 | 61 |
smooth muscle cell of the coronary artery | 5.54e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
thoracic segment blood vessel | 2.00e-36 | 5 |
subclavian artery | 2.00e-36 | 5 |
trunk blood vessel | 2.91e-26 | 7 |
systemic artery | 2.99e-15 | 33 |
systemic arterial system | 2.99e-15 | 33 |
artery | 5.13e-12 | 42 |
arterial blood vessel | 5.13e-12 | 42 |
arterial system | 5.13e-12 | 42 |
internal thoracic artery | 1.82e-11 | 2 |
carotid artery segment | 2.73e-11 | 2 |
epithelial tube open at both ends | 1.40e-08 | 59 |
blood vessel | 1.40e-08 | 59 |
blood vasculature | 1.40e-08 | 59 |
vascular cord | 1.40e-08 | 59 |
skeletal muscle tissue | 3.61e-08 | 62 |
striated muscle tissue | 3.61e-08 | 62 |
myotome | 3.61e-08 | 62 |
coronary artery | 5.54e-08 | 3 |
muscle tissue | 6.47e-08 | 64 |
musculature | 6.47e-08 | 64 |
musculature of body | 6.47e-08 | 64 |
vessel | 1.88e-07 | 68 |
somite | 3.87e-07 | 71 |
presomitic mesoderm | 3.87e-07 | 71 |
presumptive segmental plate | 3.87e-07 | 71 |
dermomyotome | 3.87e-07 | 71 |
trunk paraxial mesoderm | 3.87e-07 | 71 |
paraxial mesoderm | 4.86e-07 | 72 |
presumptive paraxial mesoderm | 4.86e-07 | 72 |
dense mesenchyme tissue | 6.06e-07 | 73 |