FFCP PHASE1:Hg19::chr1:116213741..116213752,+: Difference between revisions
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|id=chr1:116213741..116213752,+
|short_description=p9@VANGL1
|description=CAGE_peak_9_at_VANGL1_5end
|association_with_transcript=-12bp_to_ENST00000474344_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=81839 | |EntrezGene=81839 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15512 | |HGNC=15512 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-12bp_to_ENST00000474344_5end | |||
|cluster_id=chr1:116213741..116213752,+ | |||
|coexpression_cluster_id=C46 | |||
|description=CAGE_peak_9_at_VANGL1_5end | |||
|id=chr1:116213741..116213752,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.10e-24;25!CL:0000542;2.05e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.10e-24,25;CL:0000827,1.10e-24,25;CL:0000838,1.77e-12,52;CL:0000542,2.91e-12,53;CL:0000051,2.91e-12,53 | |||
|ontology_enrichment_development_v019=CL:0000051;2.05e-08;53 | |||
|ontology_enrichment_disease=DOID:2531!4.58e-15!51;DOID:0060083!4.58e-15!51;DOID:2355!8.58e-14!1;DOID:0050686!1.51e-11!137;DOID:1240!2.12e-11!39;DOID:74!1.54e-07!2;DOID:162!2.72e-07!235;DOID:14566!4.20e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:1240;5.72e-13;39!DOID:2531;1.02e-09;51!DOID:0060083;1.02e-09;51!DOID:1036;1.41e-09;8 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,2.93e-16,39;DOID:2531,1.06e-12,51;DOID:0060083,1.06e-12,51;DOID:1036,1.47e-09,8 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p9@VANGL1 | |||
}} | }} |
Latest revision as of 08:04, 16 September 2015
Short description: | p9@VANGL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_VANGL1_5end |
Coexpression cluster: | C46_acute_Hodgkin_thymus_CD8_chronic_CD4_merkel |
Association with transcript: | -12bp_to_ENST00000474344_5end |
EntrezGene: | VANGL1 |
HGNC: | 15512 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.10e-24 | 25 |
pro-T cell | 1.10e-24 | 25 |
lymphoid lineage restricted progenitor cell | 1.77e-12 | 52 |
lymphocyte | 2.91e-12 | 53 |
common lymphoid progenitor | 2.91e-12 | 53 |
Ontology term | p-value | n |
---|---|---|
leukemia | 2.93e-16 | 39 |
hematologic cancer | 1.06e-12 | 51 |
immune system cancer | 1.06e-12 | 51 |
chronic leukemia | 1.47e-09 | 8 |