FFCP PHASE1:Hg19::chr7:192282..192299,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:192282..192299,+ | |||
|coexpression_cluster_id=C4671 | |coexpression_cluster_id=C4671 | ||
|description=CAGE_peak_at_chr7:192282..192299,+ | |description=CAGE_peak_at_chr7:192282..192299,+ | ||
|id=chr7:192282..192299,+ | |id=chr7:192282..192299,+ | ||
|ontology_enrichment_celltype=CL:0002319;3.12e-09;25!CL:0000188;2.10e-08;9!CL:0000057;5.59e-08;73 | |ontology_enrichment_celltype=CL:0000055!7.59e-37!180;CL:0000057!3.63e-16!75;CL:0000133!6.65e-13!59;CL:0002319!4.54e-10!25;CL:0000393!1.18e-09!60;CL:0000211!1.18e-09!60;CL:0000333!6.23e-09!41;CL:0000183!4.39e-08!59;CL:0000221!6.26e-08!71;CL:0000680!2.61e-07!57;CL:0000056!2.61e-07!57;CL:0000355!2.61e-07!57;CL:0000187!3.67e-07!54;CL:0000188!7.50e-07!9 | ||
| | |ontology_enrichment_celltype_v019=CL:0002319;3.12e-09;25!CL:0000188;2.10e-08;9!CL:0000057;5.59e-08;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.14e-17,76;CL:0000133,3.92e-11,59;CL:0002319,3.13e-09,25;CL:0000188,1.91e-08,9;CL:0000393,3.43e-08,61;CL:0000211,3.43e-08,61;CL:0000221,5.46e-08,72;CL:0000333,2.19e-07,41;CL:0000047,3.17e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0006876;1.60e-07;11 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.92e-16!365;UBERON:0000481!1.13e-13!347;UBERON:0000073!1.26e-12!94;UBERON:0001016!1.26e-12!94;UBERON:0004121!3.58e-12!169;UBERON:0005743!6.57e-12!86;UBERON:0000924!1.29e-11!173;UBERON:0006601!1.29e-11!173;UBERON:0001017!2.04e-11!82;UBERON:0000914!6.31e-11!83;UBERON:0002329!6.31e-11!83;UBERON:0003077!6.31e-11!83;UBERON:0003059!6.31e-11!83;UBERON:0007282!6.31e-11!83;UBERON:0009618!6.31e-11!83;UBERON:0007285!6.31e-11!83;UBERON:0000033!3.68e-10!123;UBERON:0004290!1.89e-09!70;UBERON:0000468!1.91e-09!659;UBERON:0000119!6.87e-09!312;UBERON:0000153!7.09e-09!129;UBERON:0007811!7.09e-09!129;UBERON:0005256!5.00e-08!143;UBERON:0000483!5.19e-08!309;UBERON:0003075!7.56e-08!86;UBERON:0007284!7.56e-08!86;UBERON:0000955!1.01e-07!69;UBERON:0006238!1.01e-07!69;UBERON:0000922!1.11e-07!612;UBERON:0000477!2.92e-07!286;UBERON:0002346!3.15e-07!90;UBERON:0002200!6.80e-07!11;UBERON:0006876!6.80e-07!11;UBERON:0002385!7.95e-07!63;UBERON:0001015!7.95e-07!63;UBERON:0000383!7.95e-07!63;UBERON:0000486!8.58e-07!82;UBERON:0001134!8.92e-07!61;UBERON:0002036!8.92e-07!61;UBERON:0003082!8.92e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;1.60e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.22e-13,132;UBERON:0004121,1.69e-10,171;UBERON:0000924,1.69e-10,171;UBERON:0006601,1.69e-10,171;UBERON:0001016,3.86e-09,89;UBERON:0001017,3.40e-08,81;UBERON:0007503,9.55e-08,78;UBERON:0002329,9.72e-08,71;UBERON:0003059,9.72e-08,71;UBERON:0007282,9.72e-08,71;UBERON:0004290,9.72e-08,71;UBERON:0009618,9.72e-08,71;UBERON:0007524,1.11e-07,73;UBERON:0006876,1.41e-07,11;UBERON:0003077,1.84e-07,72;UBERON:0007285,1.84e-07,72;UBERON:0000119,6.85e-07,309 | |||
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|phase1_expression=2.54349730978779,2.99740733447376,2.67813367782345,1.0007329835313,0.893922188854576,0.872338524100369,0,5.68547886084148,2.08948502559871,2.94880723801811,0.697801167972428,0,0.263766978228454,4.57935505952172,3.97676850873499,3.36162573225888,1.20538905604795,4.38186054232424,0.975865597581014,43.3386124430293,47.9401624423995,73.3484048258725,10.304495536718,23.4055266874632,6.52821725892975,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0,0.447830948479849,0.971680998056939,1.03030227053675,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0.217188844705117,0,0,0,0.211255286311942,0,0,0.112328631146495,0,0,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,10.7312137552582,1.53435074212236,1.44575660953827,4.51204119572301,2.02785126545153,3.9764297352555,2.43317435151318,7.84638982461763,5.76496433402666,5.27008714158756,0.72038491523742,0,0,0.324547393654683,0.174129737299267,0,0,0,0,1.39133685156694,0,0.347140501607594,1.69592382577203,0.419499436209906,0.550236083880135,0.835979866147242,0.516833518338658,0,0,0.402829317109147,0,0,0.367663080345869,0.81014194788176,0.17859945656816,0,0.225222960966644,0,0.949265659568129,0.366403487860815,0,0,0,0.993943903390637,2.78587125662075,0.132409180813219,2.0078563452417,3.54668382198357,1.68203280042692,4.2699598291882,4.19334832309172,4.04574346019696,1.0776853765575,2.28846664358842,11.6545219286597,13.82822218752,1.40592859100278,3.43376084513353,1.1409436430889,5.23070381931304,1.17434498643765,2.26622122115384,2.10676210053373,1.63323337003915,9.08973948107083,3.92637968467909,3.56400857184616,7.66527480763526,9.10161361938026,7.18618141816238,8.08013346979518,4.00379263590285,1.38532057742091,6.14568669233173,2.75839016219118,11.8688066536211,0.226864366320042,2.87023417102179,0.427114777637135,2.33125091275518,2.70081986475962,1.44273540933814,0.772921620136887,2.41951913231067,2.02531598689519,1.65642908774038,2.52433774244115,1.65689817556139,1.61646056818812,0.710019185033229,0.503760491138201,0.67824236924195,0,0,0.286804595389004,4.75697453905422,6.75901818439575,4.53156377191122,1.86589899027667,5.04641701751257,2.55484151353081,14.0804579096834,20.5837100221723,27.6269842704961,2.78620756819187,2.16563844500876,0.236613600079688,0.337169380156203,0,0.330881918197182,0.435758888184812,0,0.134831308160164,0.784885860501384,0.38474715694639,0,1.40241773803446,1.2347220339942,0,0,0,0,0,0,8.0636870840307,0,0,0,0.185176890317059,1.3032332212413,1.03993478527958,12.9898207822746,7.53547632337999,3.52226082707465,0,0,0,0,0,0,0.936017060556951,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0.264145302039678,0.621984346622316,0.432359860250884,0.37872730027914,0.761974731506028,0.381988425558278,2.34434894420094,3.4214489204541,0.616964956219941,0.600686115687835,0.285826432630578,28.4812954237216,34.8768055066624,14.740995450011,0.904902010304444,17.8828222925941,1.690605505112,1.06375246633948,0,4.62973273671856,0,3.46348832720929,1.42977993658148,3.25572963234866,4.93944202068461,1.30294473717494,0,3.16780749173372,0.602878754119172,0.871533458600294,0,0,0,0,0.958499421966331,3.44585807502342,4.27910715122155,0.434343920002738,2.4657158706046,0.716243852959582,0,0,0,0.256686072559497,3.30323011489202,7.8083912314573,6.95959931499926,5.52803675603351,7.01732626818479,0,0,0,4.9076596687656,11.5039219843726,5.69656549769445,4.15941723061614,0.356857977594324,0.788512075169673,0.585707074963566,0.601892199455438,6.82222512167955,2.0694614258501,4.64957918974806,3.50301420229236,1.21637060255316,17.2305018567212,22.3043225477056,0,0,0.106727557803444,0.303127571446259,0,0.30239029332968,2.72918588600655,0.61384789315225,2.24528075546459,1.53766979106841,1.02341449813341,1.12597744800525,4.45254199334973,3.54682295746108,3.37367278094941,1.8067974323038,0,6.39157081529776,0.362578348774867,0.40101294060657,0,1.14814448164607,0.728364672026868,3.67148361886388,0,0.616122696835318,3.13739907670742,2.92278449306521,1.37217117560738,1.13733384070897,0,0,1.54227252690289,1.62567862526312,3.01013864312912,1.27438136522519,0.831076008928724,2.23874754722178,0,0,0.769350375349168,1.31205858279882,3.25378394664303,0.412164046590889,0,0,0,0,4.82051789532479,17.0140464194135,11.5536462835983,19.1879593407662,7.02966519671106,3.86712881525785,4.93056759308377,9.8010621528516,14.6902858817117,0,0,0,0,0.929691098594572,0.31481234683064,0,0.616067160352178,0,0,0,0.572499546967965,3.72158369359667,2.53103539774981,0.953150969619124,3.58256907835867,5.56320684444097,5.09125196681499,0.78494864019923,0.179872457583315,0.54907405947211,1.64937363283961,0.606547444719948,1.58510321173008,1.26377536871694,5.36397112998549,0.731140468893853,1.05650146756755,1.09199929126389,0.565621727814851,2.26016233240486,4.96228809191512,0.66343897524122,0,2.89387767133344,3.27947376023316,0,0.30982349809975,2.25356482025793,2.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| ||
|short_description=p@chr7:192282..192299,+ | |short_description=p@chr7:192282..192299,+ | ||
}} | }} |
Latest revision as of 08:18, 31 July 2015
Short description: | p@chr7:192282..192299, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:192282..192299, + |
Coexpression cluster: | C4671_Astrocyte_Meningeal_Hair_Pericytes_Skeletal_glioblastoma_normal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.14e-17 | 76 |
neurectodermal cell | 3.92e-11 | 59 |
neural cell | 3.13e-09 | 25 |
cell of skeletal muscle | 1.91e-08 | 9 |
electrically responsive cell | 3.43e-08 | 61 |
electrically active cell | 3.43e-08 | 61 |
ectodermal cell | 5.46e-08 | 72 |
migratory neural crest cell | 2.19e-07 | 41 |
neuronal stem cell | 3.17e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.22e-13 | 132 |
ectoderm-derived structure | 1.69e-10 | 171 |
ectoderm | 1.69e-10 | 171 |
presumptive ectoderm | 1.69e-10 | 171 |
nervous system | 3.86e-09 | 89 |
central nervous system | 3.40e-08 | 81 |
epithelial vesicle | 9.55e-08 | 78 |
somite | 9.72e-08 | 71 |
presomitic mesoderm | 9.72e-08 | 71 |
presumptive segmental plate | 9.72e-08 | 71 |
dermomyotome | 9.72e-08 | 71 |
trunk paraxial mesoderm | 9.72e-08 | 71 |
dense mesenchyme tissue | 1.11e-07 | 73 |
vasculature of organ | 1.41e-07 | 11 |
paraxial mesoderm | 1.84e-07 | 72 |
presumptive paraxial mesoderm | 1.84e-07 | 72 |
cell layer | 6.85e-07 | 309 |