FFCP PHASE1:Hg19::chr2:113589233..113589244,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:113589233..113589244,- | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_at_chr2:113589233..113589244,- | |description=CAGE_peak_at_chr2:113589233..113589244,- | ||
|id=chr2:113589233..113589244,- | |id=chr2:113589233..113589244,- | ||
|ontology_enrichment_celltype=CL:0000860;3.53e-63;33!CL:0002057;3.53e-63;33!CL:0000473;5.64e-42;39!CL:0000234;5.64e-42;39!CL:0000576;5.50e-27;48!CL:0000766;5.29e-18;69!CL:0000763;3.46e-13;100!CL:0002087;5.57e-12;104 | |ontology_enrichment_celltype=CL:0002057!5.10e-67!42;CL:0000860!3.93e-62!45;CL:0002194!2.19e-45!63;CL:0000576!2.19e-45!63;CL:0000040!2.19e-45!63;CL:0000559!2.19e-45!63;CL:0002009!8.18e-44!65;CL:0000839!2.85e-40!70;CL:0000557!1.27e-39!71;CL:0000766!1.37e-39!76;CL:0000763!5.45e-36!112;CL:0000049!5.45e-36!112;CL:0000037!1.11e-25!172;CL:0000566!1.11e-25!172;CL:0002087!7.69e-25!119;CL:0000988!7.65e-24!182;CL:0002032!1.02e-23!165;CL:0000837!1.02e-23!165;CL:0002031!8.24e-22!124;CL:0000738!8.63e-22!140;CL:0000048!2.18e-11!430;CL:0000723!4.15e-11!436;CL:0000034!9.51e-11!444;CL:0000134!5.14e-09!358;CL:0002320!1.09e-08!365;CL:0000219!1.52e-07!390;CL:0002371!4.72e-07!591 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;3.53e-63;33!CL:0002057;3.53e-63;33!CL:0000473;5.64e-42;39!CL:0000234;5.64e-42;39!CL:0000576;5.50e-27;48!CL:0000766;5.29e-18;69!CL:0000763;3.46e-13;100!CL:0002087;5.57e-12;104 | ||
|ontology_enrichment_disease=DOID:0060085;1.39e-11;1!DOID:3165;1.39e-11;1!DOID:0060121;1.39e-11;1!DOID:2438;1.39e-11;1!DOID:4418;1.39e-11;1 | |ontology_enrichment_celltype_v019_2=CL:0000860,2.65e-54,42;CL:0002057,2.65e-54,42;CL:0000473,2.85e-47,48;CL:0000234,2.85e-47,48;CL:0002194,1.21e-42,59;CL:0000576,1.21e-42,59;CL:0000040,1.21e-42,59;CL:0000559,1.21e-42,59;CL:0002009,3.34e-41,61;CL:0000839,5.69e-38,66;CL:0000557,2.21e-37,67;CL:0000766,1.12e-34,72;CL:0000763,7.99e-29,108;CL:0000049,7.99e-29,108;CL:0002087,5.14e-21,115;CL:0002031,4.70e-20,120;CL:0002032,1.24e-18,161;CL:0000837,1.24e-18,161;CL:0000037,9.24e-18,168;CL:0000738,1.90e-17,136;CL:0000988,9.67e-17,177;CL:0000134,4.09e-07,354;CL:0002320,6.33e-07,361 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_development_v019=CL:0002057;4.36e-35;42!CL:0000049;3.82e-08;108 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060085;1.39e-11;1!DOID:3165;1.39e-11;1!DOID:0060121;1.39e-11;1!DOID:2438;1.39e-11;1!DOID:4418;1.39e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,1.63e-11,1;DOID:3165,1.63e-11,1;DOID:0060121,1.63e-11,1;DOID:2438,1.63e-11,1;DOID:4418,1.63e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.81e-37!80;UBERON:0001474!3.02e-34!86;UBERON:0004765!1.91e-30!101;UBERON:0001434!1.91e-30!101;UBERON:0002390!4.50e-30!102;UBERON:0003061!4.50e-30!102;UBERON:0002193!6.21e-29!112;UBERON:0002405!5.24e-26!115;UBERON:0002204!5.08e-25!167;UBERON:0003081!3.25e-20!216;UBERON:0002384!3.02e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.13e-33,76;UBERON:0001474,3.04e-30,82;UBERON:0004765,2.15e-27,90;UBERON:0002405,1.89e-26,93;UBERON:0002390,5.27e-25,98;UBERON:0003061,5.27e-25,98;UBERON:0001434,1.82e-24,100;UBERON:0002193,1.65e-22,108;UBERON:0002204,8.68e-16,167;UBERON:0003081,1.42e-12,203;UBERON:0000926,3.21e-07,315;UBERON:0004120,3.21e-07,315;UBERON:0006603,3.21e-07,315 | |||
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|short_description=p@chr2:113589233..113589244,- | |short_description=p@chr2:113589233..113589244,- | ||
}} | }} |
Latest revision as of 23:26, 28 July 2015
Short description: | p@chr2:113589233..113589244, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:113589233..113589244, - |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.65e-54 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.65e-54 | 42 |
defensive cell | 2.85e-47 | 48 |
phagocyte | 2.85e-47 | 48 |
monopoietic cell | 1.21e-42 | 59 |
monocyte | 1.21e-42 | 59 |
monoblast | 1.21e-42 | 59 |
promonocyte | 1.21e-42 | 59 |
macrophage dendritic cell progenitor | 3.34e-41 | 61 |
myeloid lineage restricted progenitor cell | 5.69e-38 | 66 |
granulocyte monocyte progenitor cell | 2.21e-37 | 67 |
myeloid leukocyte | 1.12e-34 | 72 |
myeloid cell | 7.99e-29 | 108 |
common myeloid progenitor | 7.99e-29 | 108 |
nongranular leukocyte | 5.14e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 4.70e-20 | 120 |
hematopoietic oligopotent progenitor cell | 1.24e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.24e-18 | 161 |
hematopoietic stem cell | 9.24e-18 | 168 |
leukocyte | 1.90e-17 | 136 |
hematopoietic cell | 9.67e-17 | 177 |
mesenchymal cell | 4.09e-07 | 354 |
connective tissue cell | 6.33e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.13e-33 | 76 |
bone element | 3.04e-30 | 82 |
skeletal element | 2.15e-27 | 90 |
immune system | 1.89e-26 | 93 |
hematopoietic system | 5.27e-25 | 98 |
blood island | 5.27e-25 | 98 |
skeletal system | 1.82e-24 | 100 |
hemolymphoid system | 1.65e-22 | 108 |
musculoskeletal system | 8.68e-16 | 167 |
lateral plate mesoderm | 1.42e-12 | 203 |
mesoderm | 3.21e-07 | 315 |
mesoderm-derived structure | 3.21e-07 | 315 |
presumptive mesoderm | 3.21e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 1.63e-11 | 1 |
skin benign neoplasm | 1.63e-11 | 1 |
integumentary system benign neoplasm | 1.63e-11 | 1 |
dermis tumor | 1.63e-11 | 1 |
cutaneous fibrous histiocytoma | 1.63e-11 | 1 |