FFCP PHASE1:Hg19::chr1:156106077..156106091,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:156106077..156106091,+
|short_description=p11@LMNA
|description=CAGE_peak_11_at_LMNA_5end
|association_with_transcript=0bp_to_ENST00000459904_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4000 | |EntrezGene=4000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |HGNC=6636 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000459904_5end | |||
|cluster_id=chr1:156106077..156106091,+ | |||
|description=CAGE_peak_11_at_LMNA_5end | |||
|id=chr1:156106077..156106091,+ | |||
|ontology_enrichment_celltype=CL:0000548!4.68e-16!679;CL:0000004!4.68e-16!679;CL:0000255!4.68e-16!679;CL:0000012!7.25e-16!682;CL:0000144!1.01e-14!625;CL:0002371!3.85e-14!591;CL:0000055!7.20e-12!180;CL:0000063!9.98e-11!578;CL:0000057!1.01e-10!75;CL:0000003!6.66e-09!722;CL:0002057!1.10e-07!42;CL:0000860!2.51e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.80e-19;33!CL:0002057;1.80e-19;33!CL:0000473;4.07e-12;39!CL:0000234;4.07e-12;39!CL:0000576;2.25e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.95e-15,42;CL:0002057,2.95e-15,42;CL:0000473,1.61e-12,48;CL:0000234,1.61e-12,48;CL:0000557,2.14e-12,67;CL:0002009,1.64e-10,61;CL:0000839,2.69e-10,66;CL:0000766,7.04e-09,72;CL:0002194,9.12e-09,59;CL:0000576,9.12e-09,59;CL:0000040,9.12e-09,59;CL:0000559,9.12e-09,59;CL:0000134,1.43e-08,354;CL:0000219,2.14e-08,386;CL:0002320,4.67e-08,361;CL:0000723,1.13e-07,433;CL:0000048,1.17e-07,427;CL:0000034,3.56e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.81e-11;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!3.54e-10!95;UBERON:0002204!1.94e-09!167;UBERON:0002097!5.21e-07!40;UBERON:0002199!5.27e-07!45;UBERON:0002416!5.27e-07!45;UBERON:0000926!7.49e-07!448;UBERON:0004120!7.49e-07!448;UBERON:0006603!7.49e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.93e-10,76;UBERON:0001474,1.02e-09,82;UBERON:0001434,1.19e-09,100;UBERON:0004765,5.06e-09,90;UBERON:0002204,2.44e-08,167;UBERON:0002384,2.30e-07,371;UBERON:0002405,6.49e-07,93 | |||
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|short_description=p11@LMNA | |||
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Latest revision as of 15:06, 17 September 2015
Short description: | p11@LMNA |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_LMNA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000459904_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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classical monocyte | 2.95e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.95e-15 | 42 |
defensive cell | 1.61e-12 | 48 |
phagocyte | 1.61e-12 | 48 |
granulocyte monocyte progenitor cell | 2.14e-12 | 67 |
macrophage dendritic cell progenitor | 1.64e-10 | 61 |
myeloid lineage restricted progenitor cell | 2.69e-10 | 66 |
myeloid leukocyte | 7.04e-09 | 72 |
monopoietic cell | 9.12e-09 | 59 |
monocyte | 9.12e-09 | 59 |
monoblast | 9.12e-09 | 59 |
promonocyte | 9.12e-09 | 59 |
mesenchymal cell | 1.43e-08 | 354 |
motile cell | 2.14e-08 | 386 |
connective tissue cell | 4.67e-08 | 361 |
somatic stem cell | 1.13e-07 | 433 |
multi fate stem cell | 1.17e-07 | 427 |
stem cell | 3.56e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.93e-10 | 76 |
bone element | 1.02e-09 | 82 |
skeletal system | 1.19e-09 | 100 |
skeletal element | 5.06e-09 | 90 |
musculoskeletal system | 2.44e-08 | 167 |
connective tissue | 2.30e-07 | 371 |
immune system | 6.49e-07 | 93 |