FFCP PHASE1:Hg19::chr2:173292390..173292414,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3655 | |EntrezGene=3655 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6142 | |HGNC=6142 | ||
|TSSclassifier=strong | |||
|UniProt=P23229 | |UniProt=P23229 | ||
|association_with_transcript=76bp_to_ENST00000264106,ENST00000343713,ENST00000375221,NM_000210,NM_001079818,uc002uho.1,uc002uhp.1_5end | |association_with_transcript=76bp_to_ENST00000264106,ENST00000343713,ENST00000375221,NM_000210,NM_001079818,uc002uho.1,uc002uhp.1_5end | ||
|cluster_id=chr2:173292390..173292414,+ | |||
|description=CAGE_peak_2_at_ITGA6_5end | |description=CAGE_peak_2_at_ITGA6_5end | ||
|id=chr2:173292390..173292414,+ | |id=chr2:173292390..173292414,+ | ||
|ontology_enrichment_celltype=CL:0002139;1.83e-10;24!CL:0000071;5.33e-09;18!CL:0002076;5.07e-07;42 | |ontology_enrichment_celltype=CL:0000066!1.86e-26!254;CL:0000223!5.89e-12!59;CL:0002139!3.31e-10!24;CL:0000076!8.84e-10!62;CL:0000071!9.15e-09!18;CL:0002546!9.15e-09!18;CL:0002321!1.03e-08!248;CL:0000220!2.34e-08!246;CL:0002076!8.38e-08!43;CL:0000115!2.00e-07!35;CL:0002078!6.21e-07!44 | ||
| | |ontology_enrichment_celltype_v019=CL:0002139;1.83e-10;24!CL:0000071;5.33e-09;18!CL:0002076;5.07e-07;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0000066,2.00e-26,253;CL:0000223,8.27e-13,58;CL:0002139,2.04e-10,24;CL:0000076,2.28e-09,63;CL:0000071,6.13e-09,18;CL:0002546,6.13e-09,18;CL:0002076,1.70e-08,42;CL:0002321,6.52e-08,250;CL:0000115,1.69e-07,36;CL:0002078,5.21e-07,45 | ||
|ontology_enrichment_uberon=UBERON:0004638;5.33e-09;18!UBERON:0001986;5.33e-09;18!UBERON:0004852;5.33e-09;18!UBERON:0000487;4.06e-08;22 | |ontology_enrichment_development_v019=CL:0002546;5.33e-09;18!CL:0000223;4.55e-07;58 | ||
|ontology_enrichment_disease=DOID:305!4.48e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.22e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.98e-12!169;UBERON:0000925!1.98e-12!169;UBERON:0006595!1.98e-12!169;UBERON:0004111!9.25e-12!241;UBERON:0001007!1.00e-11!155;UBERON:0001555!1.00e-11!155;UBERON:0007026!1.00e-11!155;UBERON:0000467!6.71e-11!625;UBERON:0000480!7.44e-11!626;UBERON:0000477!1.94e-09!286;UBERON:0000468!3.46e-09!659;UBERON:0004921!5.33e-09!129;UBERON:0004185!5.33e-09!129;UBERON:0001986!9.15e-09!18;UBERON:0004638!9.15e-09!18;UBERON:0004852!9.15e-09!18;UBERON:0000077!1.75e-08!130;UBERON:0000062!3.40e-08!511;UBERON:0000483!3.86e-08!309;UBERON:0000466!5.58e-08!126;UBERON:0000119!5.75e-08!312;UBERON:0000487!6.27e-08!22;UBERON:0000475!7.44e-08!365;UBERON:0004121!1.07e-07!169;UBERON:0000064!1.71e-07!219;UBERON:0000025!4.11e-07!194;UBERON:0005177!5.52e-07!107;UBERON:0001041!6.96e-07!98;UBERON:0000464!8.60e-07!104;UBERON:0000481!8.78e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.33e-09;18!UBERON:0001986;5.33e-09;18!UBERON:0004852;5.33e-09;18!UBERON:0000487;4.06e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,6.68e-11,240;UBERON:0004119,7.90e-10,160;UBERON:0000925,7.90e-10,160;UBERON:0006595,7.90e-10,160;UBERON:0001007,1.34e-09,145;UBERON:0001555,1.34e-09,145;UBERON:0007026,1.34e-09,145;UBERON:0004638,6.13e-09,18;UBERON:0001986,6.13e-09,18;UBERON:0004852,6.13e-09,18;UBERON:0000487,4.73e-08,22;UBERON:0005177,2.03e-07,101;UBERON:0011216,3.09e-07,223;UBERON:0004921,3.55e-07,118 | |||
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| ||
|short_description=p2@ITGA6 | |short_description=p2@ITGA6 | ||
}} | }} |
Latest revision as of 05:19, 18 September 2015
Short description: | p2@ITGA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ITGA6_5end |
Coexpression cluster: | NA |
Association with transcript: | 76bp_to_ENST00000264106, ENST00000343713, ENST00000375221, NM_000210, NM_001079818, uc002uho.1, uc002uhp.1_5end |
EntrezGene: | ITGA6 |
HGNC: | 6142 |
UniProt: | P23229 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.00e-26 | 253 |
endodermal cell | 8.27e-13 | 58 |
endothelial cell of vascular tree | 2.04e-10 | 24 |
squamous epithelial cell | 2.28e-09 | 63 |
blood vessel endothelial cell | 6.13e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.13e-09 | 18 |
endo-epithelial cell | 1.70e-08 | 42 |
embryonic cell | 6.52e-08 | 250 |
endothelial cell | 1.69e-07 | 36 |
meso-epithelial cell | 5.21e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 6.68e-11 | 240 |
endoderm-derived structure | 7.90e-10 | 160 |
endoderm | 7.90e-10 | 160 |
presumptive endoderm | 7.90e-10 | 160 |
digestive system | 1.34e-09 | 145 |
digestive tract | 1.34e-09 | 145 |
primitive gut | 1.34e-09 | 145 |
blood vessel endothelium | 6.13e-09 | 18 |
endothelium | 6.13e-09 | 18 |
cardiovascular system endothelium | 6.13e-09 | 18 |
simple squamous epithelium | 4.73e-08 | 22 |
trunk region element | 2.03e-07 | 101 |
organ system subdivision | 3.09e-07 | 223 |
subdivision of digestive tract | 3.55e-07 | 118 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.22e-09 | 106 |