FFCP PHASE1:Hg19::chr15:69373210..69373239,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=283673 | |EntrezGene=283673 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=26596 | |HGNC=26596 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000435479,ENST00000559870,uc010big.2_5end | |association_with_transcript=0bp_to_ENST00000435479,ENST00000559870,uc010big.2_5end | ||
|cluster_id=chr15:69373210..69373239,+ | |||
|coexpression_cluster_id=C2169 | |coexpression_cluster_id=C2169 | ||
|description=CAGE_peak_1_at_LINC00277_5end | |description=CAGE_peak_1_at_LINC00277_5end | ||
|id=chr15:69373210..69373239,+ | |id=chr15:69373210..69373239,+ | ||
|ontology_enrichment_celltype=CL:0000115!2.25e-09!35 | |ontology_enrichment_celltype=CL:0000115!2.25e-09!35 | ||
|ontology_enrichment_celltype_v019=CL:0002138;6.86e-12;6!CL:0000333;2.54e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,7.83e-12,6;CL:0002138,7.83e-12,6;CL:0005022,7.83e-12,6;CL:0000115,4.84e-07,36 | |||
|ontology_enrichment_development_v019=CL:0005022;6.86e-12;6 | |||
|ontology_enrichment_disease=DOID:171!2.62e-10!10 | |ontology_enrichment_disease=DOID:171!2.62e-10!10 | ||
|ontology_enrichment_disease_v019=DOID:171;2.40e-28;10!DOID:3095;1.24e-12;22!DOID:2994;1.24e-12;22!DOID:2355;6.98e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.41e-28,10;DOID:3095,1.25e-12,22;DOID:2994,1.25e-12,22;DOID:2355,5.75e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002346!3.17e-20!90;UBERON:0001049!4.77e-20!57;UBERON:0005068!4.77e-20!57;UBERON:0006241!4.77e-20!57;UBERON:0007135!4.77e-20!57;UBERON:0000073!3.21e-19!94;UBERON:0001016!3.21e-19!94;UBERON:0002616!4.05e-19!59;UBERON:0005743!8.31e-17!86;UBERON:0001017!1.01e-16!82;UBERON:0003075!7.64e-16!86;UBERON:0007284!7.64e-16!86;UBERON:0000955!7.60e-15!69;UBERON:0006238!7.60e-15!69;UBERON:0003076!1.42e-13!15;UBERON:0003057!1.42e-13!15;UBERON:0007023!4.93e-13!115;UBERON:0000924!4.62e-12!173;UBERON:0006601!4.62e-12!173;UBERON:0004733!6.32e-12!12;UBERON:0002028!6.32e-12!12;UBERON:0007277!6.32e-12!12;UBERON:0000025!9.56e-12!194;UBERON:0004111!2.79e-11!241;UBERON:0004732!7.49e-11!13;UBERON:0002780!2.62e-10!41;UBERON:0001890!2.62e-10!41;UBERON:0006240!2.62e-10!41;UBERON:0001893!2.85e-10!34;UBERON:0002020!3.17e-10!34;UBERON:0003528!3.17e-10!34;UBERON:0000477!5.26e-10!286;UBERON:0003080!5.87e-10!42;UBERON:0001869!9.65e-10!32;UBERON:0001950!2.22e-09!20;UBERON:0004121!2.27e-09!169;UBERON:0002791!2.27e-09!33;UBERON:0002298!1.46e-08!8;UBERON:0002619!2.47e-08!22;UBERON:0003056!4.20e-08!61;UBERON:0000033!1.22e-07!123;UBERON:0001871!1.85e-07!7;UBERON:0000119!2.77e-07!312;UBERON:0001896!3.13e-07!3;UBERON:0005290!3.13e-07!3;UBERON:0010096!3.13e-07!3;UBERON:0002680!4.34e-07!9;UBERON:0001895!4.34e-07!9;UBERON:0010092!4.34e-07!9;UBERON:0000956!4.48e-07!25;UBERON:0000203!4.48e-07!25;UBERON:0000483!5.50e-07!309;UBERON:0000153!6.19e-07!129;UBERON:0007811!6.19e-07!129 | |ontology_enrichment_uberon=UBERON:0002346!3.17e-20!90;UBERON:0001049!4.77e-20!57;UBERON:0005068!4.77e-20!57;UBERON:0006241!4.77e-20!57;UBERON:0007135!4.77e-20!57;UBERON:0000073!3.21e-19!94;UBERON:0001016!3.21e-19!94;UBERON:0002616!4.05e-19!59;UBERON:0005743!8.31e-17!86;UBERON:0001017!1.01e-16!82;UBERON:0003075!7.64e-16!86;UBERON:0007284!7.64e-16!86;UBERON:0000955!7.60e-15!69;UBERON:0006238!7.60e-15!69;UBERON:0003076!1.42e-13!15;UBERON:0003057!1.42e-13!15;UBERON:0007023!4.93e-13!115;UBERON:0000924!4.62e-12!173;UBERON:0006601!4.62e-12!173;UBERON:0004733!6.32e-12!12;UBERON:0002028!6.32e-12!12;UBERON:0007277!6.32e-12!12;UBERON:0000025!9.56e-12!194;UBERON:0004111!2.79e-11!241;UBERON:0004732!7.49e-11!13;UBERON:0002780!2.62e-10!41;UBERON:0001890!2.62e-10!41;UBERON:0006240!2.62e-10!41;UBERON:0001893!2.85e-10!34;UBERON:0002020!3.17e-10!34;UBERON:0003528!3.17e-10!34;UBERON:0000477!5.26e-10!286;UBERON:0003080!5.87e-10!42;UBERON:0001869!9.65e-10!32;UBERON:0001950!2.22e-09!20;UBERON:0004121!2.27e-09!169;UBERON:0002791!2.27e-09!33;UBERON:0002298!1.46e-08!8;UBERON:0002619!2.47e-08!22;UBERON:0003056!4.20e-08!61;UBERON:0000033!1.22e-07!123;UBERON:0001871!1.85e-07!7;UBERON:0000119!2.77e-07!312;UBERON:0001896!3.13e-07!3;UBERON:0005290!3.13e-07!3;UBERON:0010096!3.13e-07!3;UBERON:0002680!4.34e-07!9;UBERON:0001895!4.34e-07!9;UBERON:0010092!4.34e-07!9;UBERON:0000956!4.48e-07!25;UBERON:0000203!4.48e-07!25;UBERON:0000483!5.50e-07!309;UBERON:0000153!6.19e-07!129;UBERON:0007811!6.19e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;2.74e-32;4!UBERON:0000923;2.74e-32;4!UBERON:0010316;2.74e-32;4!UBERON:0005291;2.74e-32;4!UBERON:0002050;6.82e-26;5!UBERON:0005423;6.82e-26;5!UBERON:0002298;3.33e-12;6!UBERON:0001896;3.33e-11;3!UBERON:0005290;3.33e-11;3!UBERON:0004733;1.82e-10;12!UBERON:0002028;1.82e-10;12!UBERON:0004732;1.13e-09;13!UBERON:0001473;4.77e-09;8!UBERON:0004536;4.77e-09;8!UBERON:0006558;4.77e-09;8!UBERON:0002465;2.48e-07;10!UBERON:0000013;2.54e-07;5!UBERON:0002410;2.54e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,3.53e-12,6;UBERON:0001896,3.60e-11,3;UBERON:0005290,3.60e-11,3;UBERON:0010096,3.60e-11,3;UBERON:0004733,1.69e-10,12;UBERON:0002028,1.69e-10,12;UBERON:0007277,1.69e-10,12;UBERON:0004732,1.06e-09,13;UBERON:0001473,5.27e-09,8;UBERON:0004536,5.27e-09,8;UBERON:0006558,5.27e-09,8;UBERON:0003076,2.00e-08,15;UBERON:0003057,2.00e-08,15;UBERON:0000013,2.54e-07,5;UBERON:0002410,2.54e-07,5;UBERON:0002465,2.68e-07,10;UBERON:0002346,2.68e-07,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04142150482278,0,0,0.825354125820202,0,1.8089173141853,1.06729878806013,1.00416183829401,0,0.760272105718513,0,0.735326160691737,0,0.892997282840798,0.44905874525234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0.348581828608555,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.87192013766656,0,0,0,0,0,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,1.22587722705226,0,0,0,0,0,0.281338832821026,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06846023944879,23.9115782974269,0,0.885741385813839,0.120596438625408,1.52581736317083,0.110579259931225,0.886642856860642,0.438770794307945,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.202203398942031,0,0,0,0,0,0.789168805698781,1.20990716048664,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,1.12990370390266,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268733889946905,0,0,0,0,0,0.0984274815147488,1.35477331305255,0,0,0,0.275078873194468,0,0,0,0.425246896606173,0,0.630445658393585,0.367182116944987,0,50.9176043705279,0,0,0,0,0,0,0,0,0,0,1.92630555584214,0,0,0.129282956361551,0.13223260174269,0,2.81926008926669,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,2.86704597845036,1.10929051536852,0.869349641179368,0,0,0.758245587708239,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0.179088841081487,0,0,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.754773679776773,24.0616891039521,0,22.5744264838854,34.862286896676,29.2488403651245,7.82102885162541,0,0,0.80057074828547,0,0,0.578063025868136,0,0,0,0,0.207471757392654,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0.327543835020193,0,0.135075169236789,0,0.206686796501184,0.126831620387814,0,0,0,5.80375106386748,0,0,0,0.606965604236632,0.227662191351298,0.443511850813194,0,0,3.05863798395743,0.0657727735628491,0,0,0,0,0,0,0,0,1.00067161847319,0,0,0.173858272302579,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.452888530700021,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0.644578879735772,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04142150482278,0,0,0.825354125820202,0,1.8089173141853,1.06729878806013,1.00416183829401,0,0.760272105718513,0,0.735326160691737,0,0.892997282840798,0.44905874525234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265059536642971,0.348581828608555,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.87192013766656,0,0,0,0,0,0,0,0,0,0.142977993658148,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0,0,1.22587722705226,0,0,0,0,0,0.281338832821026,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06846023944879,23.9115782974269,0,0.885741385813839,0.120596438625408,1.52581736317083,0.110579259931225,0.886642856860642,0.438770794307945,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.202203398942031,0,0,0,0,0,0.789168805698781,1.20990716048664,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.698906672968121,0,0,0,0,0,0,1.12990370390266,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268733889946905,0,0,0,0,0,0.0984274815147488,1.35477331305255,0,0,0,0.275078873194468,0,0,0,0.425246896606173,0,0.630445658393585,0.367182116944987,0,50.9176043705279,0,0,0,0,0,0,0,0,0,0,1.92630555584214,0,0,0.129282956361551,0.13223260174269,0,2.81926008926669,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,2.86704597845036,1.10929051536852,0.869349641179368,0,0,0.758245587708239,0,0,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0.179088841081487,0,0,0,0,0,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.754773679776773,24.0616891039521,0,22.5744264838854,34.862286896676,29.2488403651245,7.82102885162541,0,0,0.80057074828547,0,0,0.578063025868136,0,0,0,0,0.207471757392654,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0.327543835020193,0,0.135075169236789,0,0.206686796501184,0.126831620387814,0,0,0,5.80375106386748,0,0,0,0.606965604236632,0.227662191351298,0.443511850813194,0,0,3.05863798395743,0.0657727735628491,0,0,0,0,0,0,0,0,1.00067161847319,0,0,0.173858272302579,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.452888530700021,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0.644578879735772,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134704106029175,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p1@LINC00277 | |short_description=p1@LINC00277 | ||
}} | }} |
Latest revision as of 19:24, 18 September 2015
Short description: | p1@LINC00277 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LINC00277_5end |
Coexpression cluster: | C2169_large_neuroectodermal_neuroblastoma_carcinoid_cerebellum_pineal_occipital |
Association with transcript: | 0bp_to_ENST00000435479, ENST00000559870, uc010big.2_5end |
EntrezGene: | LINC00277 |
HGNC: | 26596 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 7.83e-12 | 6 |
endothelial cell of lymphatic vessel | 7.83e-12 | 6 |
vascular lymphangioblast | 7.83e-12 | 6 |
endothelial cell | 4.84e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
brainstem | 3.53e-12 | 6 |
medulla oblongata | 3.60e-11 | 3 |
myelencephalon | 3.60e-11 | 3 |
future myelencephalon | 3.60e-11 | 3 |
segmental subdivision of hindbrain | 1.69e-10 | 12 |
hindbrain | 1.69e-10 | 12 |
presumptive hindbrain | 1.69e-10 | 12 |
segmental subdivision of nervous system | 1.06e-09 | 13 |
lymphatic vessel | 5.27e-09 | 8 |
lymph vasculature | 5.27e-09 | 8 |
lymphatic part of lymphoid system | 5.27e-09 | 8 |
posterior neural tube | 2.00e-08 | 15 |
chordal neural plate | 2.00e-08 | 15 |
sympathetic nervous system | 2.54e-07 | 5 |
autonomic nervous system | 2.54e-07 | 5 |
lymphoid system | 2.68e-07 | 10 |
neurectoderm | 2.68e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.41e-28 | 10 |
germ cell and embryonal cancer | 1.25e-12 | 22 |
germ cell cancer | 1.25e-12 | 22 |
anemia | 5.75e-09 | 1 |