FFCP PHASE1:Hg19::chr18:61495497..61495512,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:61495497..61495512,+ | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_at_chr18:61495497..61495512,+ | |description=CAGE_peak_at_chr18:61495497..61495512,+ | ||
|id=chr18:61495497..61495512,+ | |id=chr18:61495497..61495512,+ | ||
|ontology_enrichment_celltype=CL:0002573!8.36e-17!2;CL:0000135!1.13e-08!3;CL:0000386!1.13e-08!3;CL:0000388!1.13e-08!3;CL:0002580!2.64e-08!3;CL:0002574!4.18e-07!1;CL:0002601!4.69e-07!1;CL:0002598!7.39e-07!1 | |ontology_enrichment_celltype=CL:0002573!8.36e-17!2;CL:0000135!1.13e-08!3;CL:0000386!1.13e-08!3;CL:0000388!1.13e-08!3;CL:0002580!2.64e-08!3;CL:0002574!4.18e-07!1;CL:0002601!4.69e-07!1;CL:0002598!7.39e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000135;1.12e-17;3!CL:0000388;1.12e-17;3!CL:0000138;1.22e-09;6!CL:0000499;3.92e-08;28!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,1.12e-17,3;CL:0000388,1.12e-17,3;CL:0000058,1.22e-09,6;CL:0000138,1.22e-09,6;CL:0000499,3.92e-08,28;CL:0000153,7.48e-07,9;CL:0000447,7.48e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!2.95e-07!1;DOID:4549!2.95e-07!1;DOID:5861!2.95e-07!1;DOID:6496!2.95e-07!1;DOID:6193!3.13e-07!1;DOID:2355!3.73e-07!1 | |ontology_enrichment_disease=DOID:3371!2.95e-07!1;DOID:4549!2.95e-07!1;DOID:5861!2.95e-07!1;DOID:6496!2.95e-07!1;DOID:6193!3.13e-07!1;DOID:2355!3.73e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3371;1.46e-50;1!DOID:4549;1.46e-50;1!DOID:5861;1.46e-50;1!DOID:6496;1.46e-50;1!DOID:6193;2.42e-50;1!DOID:3350;5.56e-26;2!DOID:201;1.22e-09;6!DOID:0060100;1.22e-09;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,1.46e-50,1;DOID:4549,1.46e-50,1;DOID:5861,1.46e-50,1;DOID:6496,1.46e-50,1;DOID:6193,2.42e-50,1;DOID:3350,5.56e-26,2;DOID:201,1.22e-09,6;DOID:0060100,1.22e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0000043!1.13e-08!3;UBERON:0002771!4.55e-08!3;UBERON:0007029!3.32e-07!1 | |ontology_enrichment_uberon=UBERON:0000043!1.13e-08!3;UBERON:0002771!4.55e-08!3;UBERON:0007029!3.32e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0007029;3.99e-50;1!UBERON:0002418;6.76e-18;3!UBERON:0004755;6.76e-18;3!UBERON:0007846;1.12e-17;3!UBERON:0000043;1.12e-17;3!UBERON:0007845;1.12e-17;3!UBERON:0000014;1.13e-13;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007029,3.99e-50,1;UBERON:0002418,6.76e-18,3;UBERON:0004755,6.76e-18,3;UBERON:0007846,1.12e-17,3;UBERON:0000043,1.12e-17,3;UBERON:0007845,1.12e-17,3;UBERON:0000014,1.13e-13,4 | |||
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|short_description=p@chr18:61495497..61495512,+ | |short_description=p@chr18:61495497..61495512,+ | ||
}} | }} |
Latest revision as of 01:52, 26 July 2015
Short description: | p@chr18:61495497..61495512, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:61495497..61495512, + |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 1.12e-17 | 3 |
tendon cell | 1.12e-17 | 3 |
chondroblast | 1.22e-09 | 6 |
chondrocyte | 1.22e-09 | 6 |
stromal cell | 3.92e-08 | 28 |
GAG secreting cell | 7.48e-07 | 9 |
carbohydrate secreting cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
surface | 3.99e-50 | 1 |
cartilage tissue | 6.76e-18 | 3 |
skeletal tissue | 6.76e-18 | 3 |
dense regular connective tissue | 1.12e-17 | 3 |
tendon | 1.12e-17 | 3 |
regular connective tissue | 1.12e-17 | 3 |
zone of skin | 1.13e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.46e-50 | 1 |
extraosseous chondrosarcoma | 1.46e-50 | 1 |
myxoid chondrosarcoma | 1.46e-50 | 1 |
extraskeletal myxoid chondrosarcoma | 1.46e-50 | 1 |
epithelioid sarcoma | 2.42e-50 | 1 |
mesenchymal cell neoplasm | 5.56e-26 | 2 |
connective tissue cancer | 1.22e-09 | 6 |
musculoskeletal system cancer | 1.22e-09 | 6 |