FFCP PHASE1:Hg19::chr18:44237177..44237198,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=125336 | |EntrezGene=125336 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26521 | |HGNC=26521 | ||
|TSSclassifier=strong | |||
|UniProt=F5GZB4,B7Z7T7,Q8IVV2 | |UniProt=F5GZB4,B7Z7T7,Q8IVV2 | ||
|association_with_transcript=-181bp_to_ENST00000536736,NM_144612,uc010xcw.1_5end | |association_with_transcript=-181bp_to_ENST00000536736,NM_144612,uc010xcw.1_5end | ||
|cluster_id=chr18:44237177..44237198,- | |||
|coexpression_cluster_id=C2459 | |coexpression_cluster_id=C2459 | ||
|description=CAGE_peak_5_at_LOXHD1_5end | |description=CAGE_peak_5_at_LOXHD1_5end | ||
|id=chr18:44237177..44237198,- | |id=chr18:44237177..44237198,- | ||
|ontology_enrichment_celltype=CL:0000039!6.65e-11!7;CL:0000586!6.65e-11!7;CL:0000242!2.12e-10!2;CL:0002322!1.47e-08!5 | |ontology_enrichment_celltype=CL:0000039!6.65e-11!7;CL:0000586!6.65e-11!7;CL:0000242!2.12e-10!2;CL:0002322!1.47e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000039;8.73e-22;7!CL:0000586;8.73e-22;7!CL:0000333;1.67e-14;5!CL:0000123;1.64e-09;2!CL:0000242;1.64e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,8.13e-22,7;CL:0000586,8.13e-22,7;CL:0000242,1.33e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.83e-15;10!UBERON:0005564;1.83e-15;10!UBERON:0007297;1.22e-09;2 | |||
|ontology_enrichment_disease=DOID:3095!1.19e-15!22;DOID:2994!1.19e-15!22;DOID:171!1.45e-11!10 | |ontology_enrichment_disease=DOID:3095!1.19e-15!22;DOID:2994!1.19e-15!22;DOID:171!1.45e-11!10 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.74e-36;22!DOID:2994;1.74e-36;22!DOID:171;4.70e-27;10!DOID:169;2.99e-12;6!DOID:3193;7.98e-10;2!DOID:962;7.98e-10;2!DOID:1192;5.80e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.61e-36,22;DOID:2994,1.61e-36,22;DOID:171,4.55e-27,10;DOID:169,2.91e-12,6;DOID:3193,7.98e-10,2;DOID:962,7.98e-10,2;DOID:1192,5.80e-07,3;DOID:0050687,7.46e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0002780!4.32e-29!41;UBERON:0001890!4.32e-29!41;UBERON:0006240!4.32e-29!41;UBERON:0003080!2.57e-28!42;UBERON:0001893!7.20e-21!34;UBERON:0001049!6.66e-20!57;UBERON:0005068!6.66e-20!57;UBERON:0006241!6.66e-20!57;UBERON:0007135!6.66e-20!57;UBERON:0003135!8.12e-20!11;UBERON:0001869!3.19e-19!32;UBERON:0002616!4.23e-19!59;UBERON:0002791!1.63e-18!33;UBERON:0003056!2.38e-18!61;UBERON:0002346!6.45e-18!90;UBERON:0007023!4.45e-16!115;UBERON:0000955!1.69e-15!69;UBERON:0006238!1.69e-15!69;UBERON:0002020!3.06e-15!34;UBERON:0003528!3.06e-15!34;UBERON:0000073!7.26e-15!94;UBERON:0001016!7.26e-15!94;UBERON:0000473!3.36e-14!8;UBERON:0001017!4.29e-14!82;UBERON:0003075!1.85e-13!86;UBERON:0007284!1.85e-13!86;UBERON:0005743!2.95e-13!86;UBERON:0001950!1.10e-11!20;UBERON:0000200!1.62e-11!6;UBERON:0000924!7.30e-11!173;UBERON:0006601!7.30e-11!173;UBERON:0000369!7.58e-11!4;UBERON:0002435!7.58e-11!4;UBERON:0000204!7.58e-11!4;UBERON:0010082!7.58e-11!4;UBERON:0002619!1.46e-10!22;UBERON:0009663!1.64e-10!7;UBERON:0001894!1.85e-10!7;UBERON:0006222!1.85e-10!7;UBERON:0000007!2.43e-10!2;UBERON:0003101!2.11e-09!22;UBERON:0000079!2.11e-09!22;UBERON:0000956!3.33e-09!25;UBERON:0000203!3.33e-09!25;UBERON:0002308!3.47e-08!9;UBERON:0002420!3.47e-08!9;UBERON:0000125!3.47e-08!9;UBERON:0007245!3.47e-08!9;UBERON:0010009!3.47e-08!9;UBERON:0010011!3.47e-08!9;UBERON:0000454!3.47e-08!9;UBERON:0004121!3.85e-08!169;UBERON:0000025!3.90e-08!194;UBERON:0006947!2.59e-07!3;UBERON:0004054!2.59e-07!3;UBERON:0000033!4.19e-07!123;UBERON:0002113!4.97e-07!27;UBERON:0003918!4.97e-07!27;UBERON:0005095!4.97e-07!27;UBERON:0007687!4.97e-07!27;UBERON:0005383!5.83e-07!3;UBERON:0005382!5.83e-07!3;UBERON:0002771!9.60e-07!3 | |ontology_enrichment_uberon=UBERON:0002780!4.32e-29!41;UBERON:0001890!4.32e-29!41;UBERON:0006240!4.32e-29!41;UBERON:0003080!2.57e-28!42;UBERON:0001893!7.20e-21!34;UBERON:0001049!6.66e-20!57;UBERON:0005068!6.66e-20!57;UBERON:0006241!6.66e-20!57;UBERON:0007135!6.66e-20!57;UBERON:0003135!8.12e-20!11;UBERON:0001869!3.19e-19!32;UBERON:0002616!4.23e-19!59;UBERON:0002791!1.63e-18!33;UBERON:0003056!2.38e-18!61;UBERON:0002346!6.45e-18!90;UBERON:0007023!4.45e-16!115;UBERON:0000955!1.69e-15!69;UBERON:0006238!1.69e-15!69;UBERON:0002020!3.06e-15!34;UBERON:0003528!3.06e-15!34;UBERON:0000073!7.26e-15!94;UBERON:0001016!7.26e-15!94;UBERON:0000473!3.36e-14!8;UBERON:0001017!4.29e-14!82;UBERON:0003075!1.85e-13!86;UBERON:0007284!1.85e-13!86;UBERON:0005743!2.95e-13!86;UBERON:0001950!1.10e-11!20;UBERON:0000200!1.62e-11!6;UBERON:0000924!7.30e-11!173;UBERON:0006601!7.30e-11!173;UBERON:0000369!7.58e-11!4;UBERON:0002435!7.58e-11!4;UBERON:0000204!7.58e-11!4;UBERON:0010082!7.58e-11!4;UBERON:0002619!1.46e-10!22;UBERON:0009663!1.64e-10!7;UBERON:0001894!1.85e-10!7;UBERON:0006222!1.85e-10!7;UBERON:0000007!2.43e-10!2;UBERON:0003101!2.11e-09!22;UBERON:0000079!2.11e-09!22;UBERON:0000956!3.33e-09!25;UBERON:0000203!3.33e-09!25;UBERON:0002308!3.47e-08!9;UBERON:0002420!3.47e-08!9;UBERON:0000125!3.47e-08!9;UBERON:0007245!3.47e-08!9;UBERON:0010009!3.47e-08!9;UBERON:0010011!3.47e-08!9;UBERON:0000454!3.47e-08!9;UBERON:0004121!3.85e-08!169;UBERON:0000025!3.90e-08!194;UBERON:0006947!2.59e-07!3;UBERON:0004054!2.59e-07!3;UBERON:0000033!4.19e-07!123;UBERON:0002113!4.97e-07!27;UBERON:0003918!4.97e-07!27;UBERON:0005095!4.97e-07!27;UBERON:0007687!4.97e-07!27;UBERON:0005383!5.83e-07!3;UBERON:0005382!5.83e-07!3;UBERON:0002771!9.60e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0003135;1.86e-37;11!UBERON:0000007;1.64e-33;2!UBERON:0006947;4.12e-23;3!UBERON:0004054;4.12e-23;3!UBERON:0000473;3.73e-19;8!UBERON:0003101;7.81e-19;22!UBERON:0000079;7.81e-19;22!UBERON:0001000;5.26e-18;1!UBERON:0005352;5.26e-18;1!UBERON:0001301;6.23e-18;1!UBERON:0005904;1.33e-17;4!UBERON:0002346;1.45e-17;4!UBERON:0000923;1.45e-17;4!UBERON:0010316;1.45e-17;4!UBERON:0005291;1.45e-17;4!UBERON:0003296;2.59e-17;4!UBERON:0010133;2.59e-17;4!UBERON:0000013;1.67e-14;5!UBERON:0002410;1.67e-14;5!UBERON:0002050;2.94e-14;5!UBERON:0005423;2.94e-14;5!UBERON:0001894;2.58e-10;7!UBERON:0003714;7.98e-10;2!UBERON:0000010;1.80e-08;8!UBERON:0000991;1.12e-07;21!UBERON:0000058;1.33e-07;10!UBERON:0003133;3.39e-07;44!UBERON:0000922;9.85e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,1.73e-37,11;UBERON:0000007,3.19e-33,2;UBERON:0006947,4.12e-23,3;UBERON:0004054,4.12e-23,3;UBERON:0000473,3.50e-19,8;UBERON:0003101,7.52e-19,22;UBERON:0000079,7.52e-19,22;UBERON:0001000,5.26e-18,1;UBERON:0005352,5.26e-18,1;UBERON:0001301,6.23e-18,1;UBERON:0005904,1.33e-17,4;UBERON:0003296,3.61e-17,4;UBERON:0010133,3.61e-17,4;UBERON:0000013,1.61e-14,5;UBERON:0002410,1.61e-14,5;UBERON:0001894,3.11e-10,7;UBERON:0006222,3.11e-10,7;UBERON:0003714,7.98e-10,2;UBERON:0003133,1.13e-08,48;UBERON:0000010,1.77e-08,8;UBERON:0000991,1.09e-07,21;UBERON:0009196,1.09e-07,21;UBERON:0009117,1.09e-07,21;UBERON:0005564,1.09e-07,21;UBERON:0004176,2.31e-07,22;UBERON:0005156,4.73e-07,59;UBERON:0000990,4.73e-07,59 | |||
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|short_description=p5@LOXHD1 | |short_description=p5@LOXHD1 | ||
}} | }} |
Latest revision as of 15:26, 19 September 2015
Short description: | p5@LOXHD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LOXHD1_5end |
Coexpression cluster: | C2459_neuroepithelioma_neuroectodermal_neuroblastoma_Hepatocyte_peripheral_Melanocyte_liver |
Association with transcript: | -181bp_to_ENST00000536736, NM_144612, uc010xcw.1_5end |
EntrezGene: | LOXHD1 |
HGNC: | 26521 |
UniProt: | F5GZB4B7Z7T7Q8IVV2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 8.13e-22 | 7 |
germ cell | 8.13e-22 | 7 |
Merkel cell | 1.33e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 1.73e-37 | 11 |
pituitary gland | 3.19e-33 | 2 |
male genital duct | 4.12e-23 | 3 |
internal male genitalia | 4.12e-23 | 3 |
testis | 3.50e-19 | 8 |
male organism | 7.52e-19 | 22 |
male reproductive system | 7.52e-19 | 22 |
vas deferens | 5.26e-18 | 1 |
spermatic cord | 5.26e-18 | 1 |
epididymis | 6.23e-18 | 1 |
duct of male reproductive system | 1.33e-17 | 4 |
gland of diencephalon | 3.61e-17 | 4 |
neuroendocrine gland | 3.61e-17 | 4 |
sympathetic nervous system | 1.61e-14 | 5 |
autonomic nervous system | 1.61e-14 | 5 |
diencephalon | 3.11e-10 | 7 |
future diencephalon | 3.11e-10 | 7 |
neural tissue | 7.98e-10 | 2 |
reproductive organ | 1.13e-08 | 48 |
peripheral nervous system | 1.77e-08 | 8 |
gonad | 1.09e-07 | 21 |
indifferent external genitalia | 1.09e-07 | 21 |
indifferent gonad | 1.09e-07 | 21 |
gonad primordium | 1.09e-07 | 21 |
external genitalia | 2.31e-07 | 22 |
reproductive structure | 4.73e-07 | 59 |
reproductive system | 4.73e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.61e-36 | 22 |
germ cell cancer | 1.61e-36 | 22 |
neuroectodermal tumor | 4.55e-27 | 10 |
neuroendocrine tumor | 2.91e-12 | 6 |
peripheral nerve sheath neoplasm | 7.98e-10 | 2 |
neurofibroma | 7.98e-10 | 2 |
peripheral nervous system neoplasm | 5.80e-07 | 3 |
cell type cancer | 7.46e-07 | 143 |