FFCP PHASE1:Hg19::chr17:37856214..37856250,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2064 | |EntrezGene=2064 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3430 | |HGNC=3430 | ||
|TSSclassifier=strong | |||
|UniProt=B4DTR1 | |UniProt=B4DTR1 | ||
|association_with_transcript=0bp_to_ENST00000445658_5end | |association_with_transcript=0bp_to_ENST00000445658_5end | ||
|cluster_id=chr17:37856214..37856250,+ | |||
|description=CAGE_peak_3_at_ERBB2_5end | |description=CAGE_peak_3_at_ERBB2_5end | ||
|id=chr17:37856214..37856250,+ | |id=chr17:37856214..37856250,+ | ||
|ontology_enrichment_celltype=CL:0000066!4.08e-17!254;CL:0002076!1.58e-10!43;CL:0000223!2.18e-10!59;CL:0002321!3.90e-10!248;CL:0000220!1.55e-09!246;CL:0000055!1.69e-08!180 | |ontology_enrichment_celltype=CL:0000066!4.08e-17!254;CL:0002076!1.58e-10!43;CL:0000223!2.18e-10!59;CL:0002321!3.90e-10!248;CL:0000220!1.55e-09!246;CL:0000055!1.69e-08!180 | ||
|ontology_enrichment_celltype_v019=CL:0002076;3.84e-08;42 | |ontology_enrichment_celltype_v019=CL:0002076;3.84e-08;42 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.72e-16,253;CL:0002076,1.35e-10,42;CL:0000223,1.84e-10,58;CL:0002321,2.89e-09,250 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!6.73e-09!106;DOID:299!1.33e-07!25 | |ontology_enrichment_disease=DOID:305!6.73e-09!106;DOID:299!1.33e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:299;9.18e-08;25 | |ontology_enrichment_disease_v019=DOID:299;9.18e-08;25 | ||
|ontology_enrichment_disease_v019_2=DOID:305,8.92e-09,106;DOID:299,1.14e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000468!3.39e-19!659;UBERON:0004119!3.84e-19!169;UBERON:0000925!3.84e-19!169;UBERON:0006595!3.84e-19!169;UBERON:0000481!7.61e-19!347;UBERON:0000475!2.58e-17!365;UBERON:0003104!8.36e-16!238;UBERON:0009142!8.36e-16!238;UBERON:0001007!3.96e-15!155;UBERON:0001555!3.96e-15!155;UBERON:0007026!3.96e-15!155;UBERON:0000467!6.94e-15!625;UBERON:0000480!1.37e-14!626;UBERON:0002100!1.50e-14!216;UBERON:0000062!2.27e-14!511;UBERON:0000466!2.78e-12!126;UBERON:0000077!6.67e-12!130;UBERON:0004921!6.67e-12!129;UBERON:0004185!6.67e-12!129;UBERON:0000922!8.92e-12!612;UBERON:0000464!1.77e-10!104;UBERON:0001048!1.99e-10!168;UBERON:0009569!7.83e-10!113;UBERON:0002050!1.10e-09!605;UBERON:0005423!1.10e-09!605;UBERON:0000923!1.55e-09!604;UBERON:0005291!1.55e-09!604;UBERON:0006598!1.55e-09!604;UBERON:0002532!1.55e-09!604;UBERON:0003102!2.56e-09!95;UBERON:0000064!2.61e-09!219;UBERON:0005177!3.15e-09!107;UBERON:0000119!3.21e-09!312;UBERON:0005631!3.43e-09!14;UBERON:0000158!3.43e-09!14;UBERON:0005256!4.24e-09!143;UBERON:0004923!5.38e-09!57;UBERON:0000483!5.75e-09!309;UBERON:0003103!4.52e-08!69;UBERON:0001008!8.81e-08!45;UBERON:0005156!9.89e-08!59;UBERON:0000990!9.89e-08!59;UBERON:0000477!1.19e-07!286;UBERON:0006554!1.83e-07!44;UBERON:0005911!2.63e-07!82;UBERON:0000161!2.64e-07!35;UBERON:0004111!3.35e-07!241;UBERON:0002553!4.03e-07!70;UBERON:0001041!9.19e-07!98 | |ontology_enrichment_uberon=UBERON:0000468!3.39e-19!659;UBERON:0004119!3.84e-19!169;UBERON:0000925!3.84e-19!169;UBERON:0006595!3.84e-19!169;UBERON:0000481!7.61e-19!347;UBERON:0000475!2.58e-17!365;UBERON:0003104!8.36e-16!238;UBERON:0009142!8.36e-16!238;UBERON:0001007!3.96e-15!155;UBERON:0001555!3.96e-15!155;UBERON:0007026!3.96e-15!155;UBERON:0000467!6.94e-15!625;UBERON:0000480!1.37e-14!626;UBERON:0002100!1.50e-14!216;UBERON:0000062!2.27e-14!511;UBERON:0000466!2.78e-12!126;UBERON:0000077!6.67e-12!130;UBERON:0004921!6.67e-12!129;UBERON:0004185!6.67e-12!129;UBERON:0000922!8.92e-12!612;UBERON:0000464!1.77e-10!104;UBERON:0001048!1.99e-10!168;UBERON:0009569!7.83e-10!113;UBERON:0002050!1.10e-09!605;UBERON:0005423!1.10e-09!605;UBERON:0000923!1.55e-09!604;UBERON:0005291!1.55e-09!604;UBERON:0006598!1.55e-09!604;UBERON:0002532!1.55e-09!604;UBERON:0003102!2.56e-09!95;UBERON:0000064!2.61e-09!219;UBERON:0005177!3.15e-09!107;UBERON:0000119!3.21e-09!312;UBERON:0005631!3.43e-09!14;UBERON:0000158!3.43e-09!14;UBERON:0005256!4.24e-09!143;UBERON:0004923!5.38e-09!57;UBERON:0000483!5.75e-09!309;UBERON:0003103!4.52e-08!69;UBERON:0001008!8.81e-08!45;UBERON:0005156!9.89e-08!59;UBERON:0000990!9.89e-08!59;UBERON:0000477!1.19e-07!286;UBERON:0006554!1.83e-07!44;UBERON:0005911!2.63e-07!82;UBERON:0000161!2.64e-07!35;UBERON:0004111!3.35e-07!241;UBERON:0002553!4.03e-07!70;UBERON:0001041!9.19e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.19e-07;33!UBERON:0005631;8.21e-07;10!UBERON:0000158;8.21e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0004921;2.19e-07;33!UBERON:0005631;8.21e-07;10!UBERON:0000158;8.21e-07;10 | ||
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| ||
|short_description=p3@ERBB2 | |short_description=p3@ERBB2 | ||
}} | }} |
Latest revision as of 22:33, 19 September 2015
Short description: | p3@ERBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ERBB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000445658_5end |
EntrezGene: | ERBB2 |
HGNC: | 3430 |
UniProt: | B4DTR1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.72e-16 | 253 |
endo-epithelial cell | 1.35e-10 | 42 |
endodermal cell | 1.84e-10 | 58 |
embryonic cell | 2.89e-09 | 250 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.42e-18 | 160 |
endoderm | 2.42e-18 | 160 |
presumptive endoderm | 2.42e-18 | 160 |
digestive system | 2.93e-14 | 145 |
digestive tract | 2.93e-14 | 145 |
primitive gut | 2.93e-14 | 145 |
trunk | 6.85e-14 | 199 |
subdivision of digestive tract | 5.72e-11 | 118 |
mesenchyme | 1.65e-10 | 160 |
entire embryonic mesenchyme | 1.65e-10 | 160 |
renal system | 9.77e-10 | 48 |
subdivision of trunk | 1.54e-09 | 112 |
primordium | 2.08e-09 | 160 |
urinary system structure | 2.13e-09 | 47 |
surface structure | 2.45e-09 | 99 |
extraembryonic membrane | 2.81e-09 | 14 |
membranous layer | 2.81e-09 | 14 |
trunk region element | 4.40e-09 | 101 |
organ component layer | 9.62e-09 | 66 |
cell layer | 3.82e-08 | 309 |
compound organ | 4.19e-08 | 68 |
embryo | 4.80e-08 | 592 |
epithelium | 6.62e-08 | 306 |
reproductive structure | 1.11e-07 | 59 |
reproductive system | 1.11e-07 | 59 |
orifice | 1.91e-07 | 36 |
endo-epithelium | 2.11e-07 | 82 |
trunk mesenchyme | 3.91e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.92e-09 | 106 |
adenocarcinoma | 1.14e-07 | 25 |