FFCP PHASE1:Hg19::chr16:49733031..49733072,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:49733031..49733072,- | |||
|coexpression_cluster_id=C85 | |coexpression_cluster_id=C85 | ||
|description=CAGE_peak_at_chr16:49733031..49733072,- | |description=CAGE_peak_at_chr16:49733031..49733072,- | ||
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|ontology_enrichment_celltype=CL:0000133!3.40e-09!59;CL:0000393!7.59e-09!60;CL:0000211!7.59e-09!60;CL:0000221!1.78e-08!71;CL:0000680!5.54e-08!57;CL:0000056!5.54e-08!57;CL:0000355!5.54e-08!57;CL:0000128!1.38e-07!7;CL:0000126!1.38e-07!7;CL:0000127!1.38e-07!7;CL:0002453!1.38e-07!7;CL:0000055!1.67e-07!180;CL:0000569!2.96e-07!4;CL:0000011!2.96e-07!4;CL:0002319!7.94e-07!25 | |ontology_enrichment_celltype=CL:0000133!3.40e-09!59;CL:0000393!7.59e-09!60;CL:0000211!7.59e-09!60;CL:0000221!1.78e-08!71;CL:0000680!5.54e-08!57;CL:0000056!5.54e-08!57;CL:0000355!5.54e-08!57;CL:0000128!1.38e-07!7;CL:0000126!1.38e-07!7;CL:0000127!1.38e-07!7;CL:0002453!1.38e-07!7;CL:0000055!1.67e-07!180;CL:0000569!2.96e-07!4;CL:0000011!2.96e-07!4;CL:0002319!7.94e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000569;5.82e-31;4!CL:0000333;7.56e-15;5!CL:0002321;5.63e-13;15!CL:0002494;7.26e-12;16!CL:0000222;2.30e-09;1!CL:0000511;5.97e-09;1!CL:0002625;5.97e-09;1!CL:0000216;5.97e-09;1 | |ontology_enrichment_celltype_v019=CL:0000569;5.82e-31;4!CL:0000333;7.56e-15;5!CL:0002321;5.63e-13;15!CL:0002494;7.26e-12;16!CL:0000222;2.30e-09;1!CL:0000511;5.97e-09;1!CL:0002625;5.97e-09;1!CL:0000216;5.97e-09;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0000569,1.48e-30,4;CL:0000011,1.48e-30,4;CL:0000333,3.99e-13,41;CL:0002494,9.50e-12,16;CL:0000511,3.88e-09,1;CL:0002625,3.88e-09,1;CL:0000216,3.88e-09,1;CL:0000133,7.42e-09,59;CL:0000221,4.58e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000011;5.82e-31;4 | |ontology_enrichment_development_v019=CL:0000011;5.82e-31;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;6.47e-13;10!DOID:169;1.83e-12;6 | |ontology_enrichment_disease_v019=DOID:171;6.47e-13;10!DOID:169;1.83e-12;6 | ||
|ontology_enrichment_disease_v019_2=DOID:171,6.59e-13,10;DOID:169,2.06e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0007100!1.97e-09!27;UBERON:0000481!4.51e-09!347;UBERON:0000948!2.65e-08!24;UBERON:0005498!2.65e-08!24;UBERON:0004140!2.65e-08!24;UBERON:0009881!2.65e-08!24;UBERON:0004141!2.65e-08!24;UBERON:0003084!2.65e-08!24;UBERON:0007005!2.65e-08!24;UBERON:0004139!2.65e-08!24;UBERON:0004291!2.65e-08!24;UBERON:0000119!3.13e-08!312;UBERON:0003103!5.24e-08!69;UBERON:0000924!8.68e-08!173;UBERON:0006601!8.68e-08!173;UBERON:0000483!1.29e-07!309;UBERON:0000914!1.46e-07!83;UBERON:0002329!1.46e-07!83;UBERON:0003077!1.46e-07!83;UBERON:0003059!1.46e-07!83;UBERON:0007282!1.46e-07!83;UBERON:0009618!1.46e-07!83;UBERON:0007285!1.46e-07!83;UBERON:0000477!3.65e-07!286;UBERON:0004121!4.08e-07!169;UBERON:0001134!4.85e-07!61;UBERON:0002036!4.85e-07!61;UBERON:0003082!4.85e-07!61 | |ontology_enrichment_uberon=UBERON:0007100!1.97e-09!27;UBERON:0000481!4.51e-09!347;UBERON:0000948!2.65e-08!24;UBERON:0005498!2.65e-08!24;UBERON:0004140!2.65e-08!24;UBERON:0009881!2.65e-08!24;UBERON:0004141!2.65e-08!24;UBERON:0003084!2.65e-08!24;UBERON:0007005!2.65e-08!24;UBERON:0004139!2.65e-08!24;UBERON:0004291!2.65e-08!24;UBERON:0000119!3.13e-08!312;UBERON:0003103!5.24e-08!69;UBERON:0000924!8.68e-08!173;UBERON:0006601!8.68e-08!173;UBERON:0000483!1.29e-07!309;UBERON:0000914!1.46e-07!83;UBERON:0002329!1.46e-07!83;UBERON:0003077!1.46e-07!83;UBERON:0003059!1.46e-07!83;UBERON:0007282!1.46e-07!83;UBERON:0009618!1.46e-07!83;UBERON:0007285!1.46e-07!83;UBERON:0000477!3.65e-07!286;UBERON:0004121!4.08e-07!169;UBERON:0001134!4.85e-07!61;UBERON:0002036!4.85e-07!61;UBERON:0003082!4.85e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;7.56e-15;5!UBERON:0002410;7.56e-15;5!UBERON:0001136;5.97e-09;1!UBERON:0001343;5.97e-09;1!UBERON:0004910;5.97e-09;1!UBERON:0004813;5.97e-09;1!UBERON:0000948;1.40e-08;22!UBERON:0000010;1.80e-08;8!UBERON:0007100;1.58e-07;25 | |ontology_enrichment_uberon_v019=UBERON:0000013;7.56e-15;5!UBERON:0002410;7.56e-15;5!UBERON:0001136;5.97e-09;1!UBERON:0001343;5.97e-09;1!UBERON:0004910;5.97e-09;1!UBERON:0004813;5.97e-09;1!UBERON:0000948;1.40e-08;22!UBERON:0000010;1.80e-08;8!UBERON:0007100;1.58e-07;25 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,8.73e-15,5;UBERON:0002410,8.73e-15,5;UBERON:0001136,3.88e-09,1;UBERON:0001343,3.88e-09,1;UBERON:0004910,3.88e-09,1;UBERON:0005154,3.88e-09,1;UBERON:0005295,3.88e-09,1;UBERON:0004813,3.88e-09,1;UBERON:0005297,3.88e-09,1;UBERON:0005294,3.88e-09,1;UBERON:0010141,3.88e-09,1;UBERON:0005891,3.88e-09,1;UBERON:0000010,1.94e-08,8;UBERON:0000948,8.96e-08,24;UBERON:0005498,8.96e-08,24;UBERON:0004140,8.96e-08,24;UBERON:0009881,8.96e-08,24;UBERON:0004141,8.96e-08,24;UBERON:0003084,8.96e-08,24;UBERON:0007005,8.96e-08,24;UBERON:0004139,8.96e-08,24;UBERON:0004291,8.96e-08,24;UBERON:0007100,6.89e-07,27 | |||
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| ||
|short_description=p@chr16:49733031..49733072,- | |short_description=p@chr16:49733031..49733072,- | ||
}} | }} |
Latest revision as of 09:21, 25 July 2015
Short description: | p@chr16:49733031..49733072, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:49733031..49733072, - |
Coexpression cluster: | C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac mesenchymal cell | 1.48e-30 | 4 |
migratory trunk neural crest cell | 1.48e-30 | 4 |
migratory neural crest cell | 3.99e-13 | 41 |
cardiocyte | 9.50e-12 | 16 |
androgen binding protein secreting cell | 3.88e-09 | 1 |
seminiferous tubule epithelial cell | 3.88e-09 | 1 |
Sertoli cell | 3.88e-09 | 1 |
neurectodermal cell | 7.42e-09 | 59 |
ectodermal cell | 4.58e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 8.73e-15 | 5 |
autonomic nervous system | 8.73e-15 | 5 |
mesothelium | 3.88e-09 | 1 |
seminiferous tubule of testis | 3.88e-09 | 1 |
epithelium of male gonad | 3.88e-09 | 1 |
epithelial cord | 3.88e-09 | 1 |
sex cord | 3.88e-09 | 1 |
seminiferous tubule epithelium | 3.88e-09 | 1 |
testis sex cord | 3.88e-09 | 1 |
genital ridge | 3.88e-09 | 1 |
primitive sex cord of indifferent gonad | 3.88e-09 | 1 |
coelomic epithelium | 3.88e-09 | 1 |
peripheral nervous system | 1.94e-08 | 8 |
heart | 8.96e-08 | 24 |
primitive heart tube | 8.96e-08 | 24 |
primary heart field | 8.96e-08 | 24 |
anterior lateral plate mesoderm | 8.96e-08 | 24 |
heart tube | 8.96e-08 | 24 |
heart primordium | 8.96e-08 | 24 |
cardiac mesoderm | 8.96e-08 | 24 |
cardiogenic plate | 8.96e-08 | 24 |
heart rudiment | 8.96e-08 | 24 |
primary circulatory organ | 6.89e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.59e-13 | 10 |
neuroendocrine tumor | 2.06e-12 | 6 |