FFCP PHASE1:Hg19::chr1:43533230..43533270,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:43533230..43533270,+
|short_description=p@chr1:43533230..43533270,+
|description=CAGE_peak_at_chr1:43533230..43533270,+
|association_with_transcript=NA
|E...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:43533230..43533270,+ | |||
|coexpression_cluster_id=C311 | |||
|description=CAGE_peak_at_chr1:43533230..43533270,+ | |||
|id=chr1:43533230..43533270,+ | |||
|ontology_enrichment_celltype=CL:0002586!6.21e-16!3;CL:0000149!4.57e-12!4;CL:0000147!1.29e-08!14 | |||
|ontology_enrichment_celltype_v019=CL:0002586;2.75e-74;3!CL:0000149;5.53e-56;4!CL:0000147;1.26e-16;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,3.54e-74,3;CL:0000149,6.68e-56,4;CL:0000147,1.33e-16,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.14e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!9.70e-39!86;UBERON:0000073!1.54e-34!94;UBERON:0001016!1.54e-34!94;UBERON:0001893!2.84e-34!34;UBERON:0003075!2.07e-33!86;UBERON:0007284!2.07e-33!86;UBERON:0001869!2.20e-32!32;UBERON:0000955!2.71e-32!69;UBERON:0006238!2.71e-32!69;UBERON:0002346!1.14e-31!90;UBERON:0003056!1.64e-31!61;UBERON:0002791!4.89e-31!33;UBERON:0001049!1.58e-30!57;UBERON:0005068!1.58e-30!57;UBERON:0006241!1.58e-30!57;UBERON:0007135!1.58e-30!57;UBERON:0002020!3.03e-30!34;UBERON:0003528!3.03e-30!34;UBERON:0002616!2.39e-29!59;UBERON:0001017!5.13e-29!82;UBERON:0002780!6.54e-28!41;UBERON:0001890!6.54e-28!41;UBERON:0006240!6.54e-28!41;UBERON:0003080!3.59e-27!42;UBERON:0000033!3.17e-25!123;UBERON:0000153!9.04e-24!129;UBERON:0007811!9.04e-24!129;UBERON:0007023!1.15e-23!115;UBERON:0002619!3.31e-22!22;UBERON:0004121!3.12e-21!169;UBERON:0000924!1.37e-20!173;UBERON:0006601!1.37e-20!173;UBERON:0001950!3.76e-20!20;UBERON:0000956!2.15e-19!25;UBERON:0000203!2.15e-19!25;UBERON:0000966!1.37e-16!5;UBERON:0005388!1.37e-16!5;UBERON:0001802!1.37e-16!5;UBERON:0001781!6.21e-16!3;UBERON:0001782!6.21e-16!3;UBERON:0005424!6.21e-16!3;UBERON:0002308!8.76e-13!9;UBERON:0000125!8.76e-13!9;UBERON:0000200!1.35e-12!6;UBERON:0000064!1.12e-11!219;UBERON:0009663!8.62e-11!7;UBERON:0000369!9.91e-11!4;UBERON:0002435!9.91e-11!4;UBERON:0000204!9.91e-11!4;UBERON:0010082!9.91e-11!4;UBERON:0002298!7.18e-10!8;UBERON:0001872!6.11e-09!5;UBERON:0002420!2.06e-08!9;UBERON:0007245!2.06e-08!9;UBERON:0010009!2.06e-08!9;UBERON:0010011!2.06e-08!9;UBERON:0000454!2.06e-08!9;UBERON:0000970!2.23e-08!20;UBERON:0002104!6.01e-08!21;UBERON:0001896!2.04e-07!3;UBERON:0005290!2.04e-07!3;UBERON:0010096!2.04e-07!3;UBERON:0000988!2.25e-07!3;UBERON:0007625!2.69e-07!11;UBERON:0000020!3.37e-07!23;UBERON:0002771!3.95e-07!3;UBERON:0005383!6.09e-07!3;UBERON:0005382!6.09e-07!3;UBERON:0001032!7.17e-07!24;UBERON:0004456!7.17e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;4.29e-79;5!UBERON:0005388;4.29e-79;5!UBERON:0001802;4.29e-79;5!UBERON:0001781;2.75e-74;3!UBERON:0001782;2.75e-74;3!UBERON:0000970;4.29e-31;20!UBERON:0002104;1.23e-29;21!UBERON:0000020;4.25e-27;23!UBERON:0001032;5.49e-26;24!UBERON:0004456;5.49e-26;24!UBERON:0000019;2.51e-21;19!UBERON:0000047;2.51e-21;19!UBERON:0004088;2.51e-21;19!UBERON:0010230;2.51e-21;19!UBERON:0007625;6.11e-21;11!UBERON:0001456;2.38e-19;21!UBERON:0001875;1.29e-13;2!UBERON:0006514;1.29e-13;2!UBERON:0000033;3.70e-08;50!UBERON:0001052;1.31e-07;4!UBERON:0010371;2.45e-07;31!UBERON:0001444;2.77e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,3.54e-74,3;UBERON:0005424,3.54e-74,3;UBERON:0000966,5.13e-66,6;UBERON:0005388,5.13e-66,6;UBERON:0001802,5.13e-66,6;UBERON:0001781,6.68e-56,4;UBERON:0000970,1.16e-29,21;UBERON:0002104,1.16e-29,21;UBERON:0000020,5.21e-26,24;UBERON:0001032,5.21e-26,24;UBERON:0004456,5.21e-26,24;UBERON:0007625,6.54e-21,11;UBERON:0000019,2.81e-20,20;UBERON:0000047,2.81e-20,20;UBERON:0010312,2.81e-20,20;UBERON:0004088,2.81e-20,20;UBERON:0010230,2.81e-20,20;UBERON:0003072,2.81e-20,20;UBERON:0004128,2.81e-20,20;UBERON:0003071,2.81e-20,20;UBERON:0001456,1.74e-18,22;UBERON:0001875,1.55e-13,2;UBERON:0006514,1.55e-13,2;UBERON:0005085,2.88e-13,31;UBERON:0003056,3.13e-10,61;UBERON:0001444,1.50e-08,49;UBERON:0003075,1.09e-07,82;UBERON:0007284,1.09e-07,82;UBERON:0001052,1.31e-07,4;UBERON:0000033,1.59e-07,56;UBERON:0002346,2.42e-07,86;UBERON:0000153,7.88e-07,62;UBERON:0007811,7.88e-07,62 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05160100093111,1.31205858279882,3.25378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48482340416319,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80784592624426,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.683060432355218,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0,0.206686796501184,0.507326481551255,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0.40781839786099,0.0657727735628491,0,0,0,0.157115589916002,14.574152492317,0,0,0,3.4308741204795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232387885739037,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05160100093111,1.31205858279882,3.25378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48482340416319,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80784592624426,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0.221858103073705,0.683060432355218,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0,0.206686796501184,0.507326481551255,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0.40781839786099,0.0657727735628491,0,0,0,0.157115589916002,14.574152492317,0,0,0,3.4308741204795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:43533230..43533270,+ | |||
}} | }} |
Latest revision as of 08:23, 28 July 2015
Short description: | p@chr1:43533230..43533270, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:43533230..43533270, + |
Coexpression cluster: | C311_rectal_heart_choriocarcinoma_placenta_chorionic_lung_ductal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 3.54e-74 | 3 |
visual pigment cell | 6.68e-56 | 4 |
pigment cell | 1.33e-16 | 14 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 3.54e-74 | 3 |
presumptive retinal pigmented epithelium | 3.54e-74 | 3 |
retina | 5.13e-66 | 6 |
photoreceptor array | 5.13e-66 | 6 |
posterior segment of eyeball | 5.13e-66 | 6 |
layer of retina | 6.68e-56 | 4 |
eye | 1.16e-29 | 21 |
visual system | 1.16e-29 | 21 |
sense organ | 5.21e-26 | 24 |
sensory system | 5.21e-26 | 24 |
entire sense organ system | 5.21e-26 | 24 |
pigment epithelium of eye | 6.54e-21 | 11 |
camera-type eye | 2.81e-20 | 20 |
simple eye | 2.81e-20 | 20 |
immature eye | 2.81e-20 | 20 |
ocular region | 2.81e-20 | 20 |
eyeball of camera-type eye | 2.81e-20 | 20 |
optic cup | 2.81e-20 | 20 |
optic vesicle | 2.81e-20 | 20 |
eye primordium | 2.81e-20 | 20 |
face | 1.74e-18 | 22 |
globus pallidus | 1.55e-13 | 2 |
pallidum | 1.55e-13 | 2 |
ectodermal placode | 2.88e-13 | 31 |
pre-chordal neural plate | 3.13e-10 | 61 |
subdivision of head | 1.50e-08 | 49 |
neural plate | 1.09e-07 | 82 |
presumptive neural plate | 1.09e-07 | 82 |
rectum | 1.31e-07 | 4 |
head | 1.59e-07 | 56 |
neurectoderm | 2.42e-07 | 86 |
anterior region of body | 7.88e-07 | 62 |
craniocervical region | 7.88e-07 | 62 |