FFCP PHASE1:Hg19::chr12:50219360..50219374,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:50219360..50219374,+ | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_at_chr12:50219360..50219374,+ | |description=CAGE_peak_at_chr12:50219360..50219374,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!1.86e-41!42;CL:0002009!1.46e-38!65;CL:0000860!3.25e-38!45;CL:0002194!3.55e-37!63;CL:0000576!3.55e-37!63;CL:0000040!3.55e-37!63;CL:0000559!3.55e-37!63;CL:0000557!4.95e-37!71;CL:0000766!2.43e-36!76;CL:0000839!4.93e-35!70;CL:0000763!4.92e-27!112;CL:0000049!4.92e-27!112;CL:0000738!1.30e-19!140;CL:0002087!1.32e-18!119;CL:0002031!1.27e-17!124;CL:0000037!1.72e-16!172;CL:0000566!1.72e-16!172;CL:0002032!2.29e-15!165;CL:0000837!2.29e-15!165;CL:0000988!4.64e-15!182;CL:0000048!1.04e-07!430;CL:0000723!1.94e-07!436;CL:0000034!4.34e-07!444 | |ontology_enrichment_celltype=CL:0002057!1.86e-41!42;CL:0002009!1.46e-38!65;CL:0000860!3.25e-38!45;CL:0002194!3.55e-37!63;CL:0000576!3.55e-37!63;CL:0000040!3.55e-37!63;CL:0000559!3.55e-37!63;CL:0000557!4.95e-37!71;CL:0000766!2.43e-36!76;CL:0000839!4.93e-35!70;CL:0000763!4.92e-27!112;CL:0000049!4.92e-27!112;CL:0000738!1.30e-19!140;CL:0002087!1.32e-18!119;CL:0002031!1.27e-17!124;CL:0000037!1.72e-16!172;CL:0000566!1.72e-16!172;CL:0002032!2.29e-15!165;CL:0000837!2.29e-15!165;CL:0000988!4.64e-15!182;CL:0000048!1.04e-07!430;CL:0000723!1.94e-07!436;CL:0000034!4.34e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.16e-60;33!CL:0002057;3.16e-60;33!CL:0000473;2.71e-44;39!CL:0000234;2.71e-44;39!CL:0000576;3.00e-33;48!CL:0000766;1.33e-10;69!CL:0000763;2.87e-10;100!CL:0002363;7.03e-08;2 | |ontology_enrichment_celltype_v019=CL:0000860;3.16e-60;33!CL:0002057;3.16e-60;33!CL:0000473;2.71e-44;39!CL:0000234;2.71e-44;39!CL:0000576;3.00e-33;48!CL:0000766;1.33e-10;69!CL:0000763;2.87e-10;100!CL:0002363;7.03e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.37e-52,42;CL:0002057,8.37e-52,42;CL:0000473,3.52e-45,48;CL:0000234,3.52e-45,48;CL:0002194,6.73e-36,59;CL:0000576,6.73e-36,59;CL:0000040,6.73e-36,59;CL:0000559,6.73e-36,59;CL:0002009,1.06e-34,61;CL:0000839,5.14e-32,66;CL:0000557,1.59e-31,67;CL:0000766,2.81e-29,72;CL:0000763,2.25e-22,108;CL:0000049,2.25e-22,108;CL:0002087,6.43e-18,115;CL:0002031,4.05e-17,120;CL:0000738,5.98e-15,136;CL:0002032,1.44e-14,161;CL:0000837,1.44e-14,161;CL:0000037,6.69e-14,168;CL:0000988,4.05e-13,177;CL:0002363,8.60e-08,2;CL:0000008,8.60e-08,2;CL:0000134,8.46e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;5.39e-41;42!CL:0000049;1.37e-09;108!CL:0000008;7.03e-08;2 | |ontology_enrichment_development_v019=CL:0002057;5.39e-41;42!CL:0000049;1.37e-09;108!CL:0000008;7.03e-08;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.58e-32!102;UBERON:0003061!4.58e-32!102;UBERON:0002371!6.34e-32!80;UBERON:0001474!4.13e-29!86;UBERON:0002193!2.39e-28!112;UBERON:0004765!1.54e-23!101;UBERON:0001434!1.54e-23!101;UBERON:0002405!1.71e-22!115;UBERON:0002204!7.52e-21!167;UBERON:0003081!1.28e-14!216;UBERON:0000926!1.04e-09!448;UBERON:0004120!1.04e-09!448;UBERON:0006603!1.04e-09!448;UBERON:0003127!7.67e-07!2 | |ontology_enrichment_uberon=UBERON:0002390!4.58e-32!102;UBERON:0003061!4.58e-32!102;UBERON:0002371!6.34e-32!80;UBERON:0001474!4.13e-29!86;UBERON:0002193!2.39e-28!112;UBERON:0004765!1.54e-23!101;UBERON:0001434!1.54e-23!101;UBERON:0002405!1.71e-22!115;UBERON:0002204!7.52e-21!167;UBERON:0003081!1.28e-14!216;UBERON:0000926!1.04e-09!448;UBERON:0004120!1.04e-09!448;UBERON:0006603!1.04e-09!448;UBERON:0003127!7.67e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0003566;7.03e-08;2!UBERON:0001777;7.03e-08;2 | |ontology_enrichment_uberon_v019=UBERON:0003566;7.03e-08;2!UBERON:0001777;7.03e-08;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.09e-27,76;UBERON:0001474,1.36e-25,82;UBERON:0004765,3.19e-23,90;UBERON:0002405,1.94e-22,93;UBERON:0002390,3.09e-21,98;UBERON:0003061,3.09e-21,98;UBERON:0001434,8.68e-21,100;UBERON:0002193,3.69e-19,108;UBERON:0002204,6.50e-12,167;UBERON:0003081,1.55e-09,203;UBERON:0003566,8.60e-08,2;UBERON:0001777,8.60e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.309632246632152,0,0,0,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,1.01778767145695,0.755751887377619,1.4555043671269,1.16214518452842,0,0.309706370895104,1.1507695692886,2.56160706529101,1.41889337933151,0,1.29096936716765,0,0.752969358170419,0.272906150057846,0.224723484445085,0.612167784741805,0.320929027076094,0.639337125799041,4.28806690242731,4.58766412529753,5.11469700639233,0,0,0,1.50749199154046,2.08593167368081,2.82345498116652,0.605399502633369,0.736555271975129,0,0,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649094787309367,0,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0.492434012174795,0,0.594524649154913,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0.445160178233687,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0.255897791311334,0,0.318203247925937,0,0.179872457583315,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0.342233301085281,0,0.215166616178029,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.309632246632152,0,0,0,0,0,0,0,0,0.217010870715852,0,0.32389366601898,0,1.01778767145695,0.755751887377619,1.4555043671269,1.16214518452842,0,0.309706370895104,1.1507695692886,2.56160706529101,1.41889337933151,0,1.29096936716765,0,0.752969358170419,0.272906150057846,0.224723484445085,0.612167784741805,0.320929027076094,0.639337125799041,4.28806690242731,4.58766412529753,5.11469700639233,0,0,0,1.50749199154046,2.08593167368081,2.82345498116652,0.605399502633369,0.736555271975129,0,0,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.649094787309367,0,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0.492434012174795,0,0.594524649154913,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0.445160178233687,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0.255897791311334,0,0.318203247925937,0,0.179872457583315,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298509605773748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0.342233301085281,0,0.215166616178029,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:50219360..50219374,+ | |short_description=p@chr12:50219360..50219374,+ | ||
}} | }} |
Latest revision as of 09:08, 24 July 2015
Short description: | p@chr12:50219360..50219374, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:50219360..50219374, + |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.37e-52 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.37e-52 | 42 |
defensive cell | 3.52e-45 | 48 |
phagocyte | 3.52e-45 | 48 |
monopoietic cell | 6.73e-36 | 59 |
monocyte | 6.73e-36 | 59 |
monoblast | 6.73e-36 | 59 |
promonocyte | 6.73e-36 | 59 |
macrophage dendritic cell progenitor | 1.06e-34 | 61 |
myeloid lineage restricted progenitor cell | 5.14e-32 | 66 |
granulocyte monocyte progenitor cell | 1.59e-31 | 67 |
myeloid leukocyte | 2.81e-29 | 72 |
myeloid cell | 2.25e-22 | 108 |
common myeloid progenitor | 2.25e-22 | 108 |
nongranular leukocyte | 6.43e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 4.05e-17 | 120 |
leukocyte | 5.98e-15 | 136 |
hematopoietic oligopotent progenitor cell | 1.44e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.44e-14 | 161 |
hematopoietic stem cell | 6.69e-14 | 168 |
hematopoietic cell | 4.05e-13 | 177 |
keratocyte | 8.60e-08 | 2 |
migratory cranial neural crest cell | 8.60e-08 | 2 |
mesenchymal cell | 8.46e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.09e-27 | 76 |
bone element | 1.36e-25 | 82 |
skeletal element | 3.19e-23 | 90 |
immune system | 1.94e-22 | 93 |
hematopoietic system | 3.09e-21 | 98 |
blood island | 3.09e-21 | 98 |
skeletal system | 8.68e-21 | 100 |
hemolymphoid system | 3.69e-19 | 108 |
musculoskeletal system | 6.50e-12 | 167 |
lateral plate mesoderm | 1.55e-09 | 203 |
head connective tissue | 8.60e-08 | 2 |
substantia propria of cornea | 8.60e-08 | 2 |