FFCP PHASE1:Hg19::chr2:204400013..204400047,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65059 | |EntrezGene=65059 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14436 | |HGNC=14436 | ||
|TSSclassifier=strong | |||
|UniProt=C9J0R8,Q70E73,Q8N8R9 | |UniProt=C9J0R8,Q70E73,Q8N8R9 | ||
|association_with_transcript=10bp_to_ENST00000308091,ENST00000374488,ENST00000374489,ENST00000420371,ENST00000453034,NM_203365,NM_213589,uc002vad.2,uc002vae.2,uc002vaf.2_5end | |association_with_transcript=10bp_to_ENST00000308091,ENST00000374488,ENST00000374489,ENST00000420371,ENST00000453034,NM_203365,NM_213589,uc002vad.2,uc002vae.2,uc002vaf.2_5end | ||
|cluster_id=chr2:204400013..204400047,- | |||
|coexpression_cluster_id=C202 | |coexpression_cluster_id=C202 | ||
|description=CAGE_peak_1_at_RAPH1_5end | |description=CAGE_peak_1_at_RAPH1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.08e-21!659;UBERON:0000480!4.37e-17!626;UBERON:0000467!4.90e-17!625;UBERON:0000922!2.60e-14!612;UBERON:0000477!2.17e-13!286;UBERON:0000062!6.10e-13!511;UBERON:0004111!9.49e-13!241;UBERON:0002050!5.54e-12!605;UBERON:0005423!5.54e-12!605;UBERON:0000923!6.12e-12!604;UBERON:0005291!6.12e-12!604;UBERON:0006598!6.12e-12!604;UBERON:0002532!6.12e-12!604;UBERON:0000475!1.60e-11!365;UBERON:0000481!2.37e-11!347;UBERON:0007023!9.91e-11!115;UBERON:0001017!9.77e-10!82;UBERON:0000033!1.31e-09!123;UBERON:0000955!1.98e-09!69;UBERON:0006238!1.98e-09!69;UBERON:0005743!2.13e-09!86;UBERON:0000483!2.13e-09!309;UBERON:0000073!2.96e-09!94;UBERON:0001016!2.96e-09!94;UBERON:0000119!2.99e-09!312;UBERON:0000153!3.14e-09!129;UBERON:0007811!3.14e-09!129;UBERON:0004121!4.30e-09!169;UBERON:0000025!4.47e-09!194;UBERON:0000924!1.31e-08!173;UBERON:0006601!1.31e-08!173;UBERON:0002616!1.75e-07!59;UBERON:0001049!2.64e-07!57;UBERON:0005068!2.64e-07!57;UBERON:0006241!2.64e-07!57;UBERON:0007135!2.64e-07!57;UBERON:0000956!3.43e-07!25;UBERON:0000203!3.43e-07!25 | |ontology_enrichment_uberon=UBERON:0000468!2.08e-21!659;UBERON:0000480!4.37e-17!626;UBERON:0000467!4.90e-17!625;UBERON:0000922!2.60e-14!612;UBERON:0000477!2.17e-13!286;UBERON:0000062!6.10e-13!511;UBERON:0004111!9.49e-13!241;UBERON:0002050!5.54e-12!605;UBERON:0005423!5.54e-12!605;UBERON:0000923!6.12e-12!604;UBERON:0005291!6.12e-12!604;UBERON:0006598!6.12e-12!604;UBERON:0002532!6.12e-12!604;UBERON:0000475!1.60e-11!365;UBERON:0000481!2.37e-11!347;UBERON:0007023!9.91e-11!115;UBERON:0001017!9.77e-10!82;UBERON:0000033!1.31e-09!123;UBERON:0000955!1.98e-09!69;UBERON:0006238!1.98e-09!69;UBERON:0005743!2.13e-09!86;UBERON:0000483!2.13e-09!309;UBERON:0000073!2.96e-09!94;UBERON:0001016!2.96e-09!94;UBERON:0000119!2.99e-09!312;UBERON:0000153!3.14e-09!129;UBERON:0007811!3.14e-09!129;UBERON:0004121!4.30e-09!169;UBERON:0000025!4.47e-09!194;UBERON:0000924!1.31e-08!173;UBERON:0006601!1.31e-08!173;UBERON:0002616!1.75e-07!59;UBERON:0001049!2.64e-07!57;UBERON:0005068!2.64e-07!57;UBERON:0006241!2.64e-07!57;UBERON:0007135!2.64e-07!57;UBERON:0000956!3.43e-07!25;UBERON:0000203!3.43e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.49e-08;25!UBERON:0000203;1.49e-08;25!UBERON:0002619;1.08e-07;22!UBERON:0001950;6.65e-07;20 | |ontology_enrichment_uberon_v019=UBERON:0000956;1.49e-08;25!UBERON:0000203;1.49e-08;25!UBERON:0002619;1.08e-07;22!UBERON:0001950;6.65e-07;20 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.59e-11,114;UBERON:0004111,1.27e-10,240;UBERON:0011216,3.43e-10,223;UBERON:0000956,5.16e-09,25;UBERON:0000203,5.16e-09,25;UBERON:0000955,1.23e-08,68;UBERON:0006238,1.23e-08,68;UBERON:0000025,1.90e-08,192;UBERON:0002619,3.46e-08,22;UBERON:0001017,4.08e-08,81;UBERON:0000483,1.23e-07,306;UBERON:0001016,1.35e-07,89;UBERON:0000119,1.60e-07,309;UBERON:0001950,1.96e-07,20;UBERON:0001869,7.45e-07,32 | |||
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| ||
|short_description=p1@RAPH1 | |short_description=p1@RAPH1 | ||
}} | }} |
Latest revision as of 15:55, 19 September 2015
Short description: | p1@RAPH1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAPH1_5end |
Coexpression cluster: | C202_salivary_skin_penis_tongue_uterus_cervical_immature |
Association with transcript: | 10bp_to_ENST00000308091, ENST00000374488, ENST00000374489, ENST00000420371, ENST00000453034, NM_203365, NM_213589, uc002vad.2, uc002vae.2, uc002vaf.2_5end |
EntrezGene: | RAPH1 |
HGNC: | 14436 |
UniProt: | C9J0R8Q70E73Q8N8R9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.59e-11 | 114 |
anatomical conduit | 1.27e-10 | 240 |
organ system subdivision | 3.43e-10 | 223 |
cerebral cortex | 5.16e-09 | 25 |
pallium | 5.16e-09 | 25 |
brain | 1.23e-08 | 68 |
future brain | 1.23e-08 | 68 |
tube | 1.90e-08 | 192 |
regional part of cerebral cortex | 3.46e-08 | 22 |
central nervous system | 4.08e-08 | 81 |
epithelium | 1.23e-07 | 306 |
nervous system | 1.35e-07 | 89 |
cell layer | 1.60e-07 | 309 |
neocortex | 1.96e-07 | 20 |
cerebral hemisphere | 7.45e-07 | 32 |