FFCP PHASE1:Hg19::chr8:48504387..48504397,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:48504387..48504397,- | |||
|coexpression_cluster_id=C82 | |coexpression_cluster_id=C82 | ||
|description=CAGE_peak_at_chr8:48504387..48504397,- | |description=CAGE_peak_at_chr8:48504387..48504397,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!1.06e-58!42;CL:0000860!1.81e-54!45;CL:0000766!1.16e-46!76;CL:0002194!1.93e-40!63;CL:0000576!1.93e-40!63;CL:0000040!1.93e-40!63;CL:0000559!1.93e-40!63;CL:0002009!4.59e-39!65;CL:0002393!1.32e-38!9;CL:0002397!1.32e-38!9;CL:0000839!5.83e-36!70;CL:0000557!2.16e-35!71;CL:0000738!7.71e-34!140;CL:0002087!4.66e-30!119;CL:0000763!5.41e-30!112;CL:0000049!5.41e-30!112;CL:0000037!2.01e-26!172;CL:0000566!2.01e-26!172;CL:0000988!1.23e-24!182;CL:0002031!5.05e-22!124;CL:0002032!5.75e-22!165;CL:0000837!5.75e-22!165;CL:0000767!8.19e-18!3;CL:0000842!2.36e-17!3;CL:0000134!2.71e-13!358;CL:0000224!3.79e-13!4;CL:0002320!6.53e-13!365;CL:0000219!1.47e-11!390;CL:0000094!1.47e-11!8;CL:0000048!6.12e-10!430;CL:0000723!1.04e-09!436;CL:0000034!2.07e-09!444;CL:0000080!6.39e-09!6;CL:0000081!2.00e-08!11;CL:0000875!5.25e-08!3;CL:0002396!5.25e-08!3;CL:0000623!6.74e-08!3;CL:0000825!6.74e-08!3 | |ontology_enrichment_celltype=CL:0002057!1.06e-58!42;CL:0000860!1.81e-54!45;CL:0000766!1.16e-46!76;CL:0002194!1.93e-40!63;CL:0000576!1.93e-40!63;CL:0000040!1.93e-40!63;CL:0000559!1.93e-40!63;CL:0002009!4.59e-39!65;CL:0002393!1.32e-38!9;CL:0002397!1.32e-38!9;CL:0000839!5.83e-36!70;CL:0000557!2.16e-35!71;CL:0000738!7.71e-34!140;CL:0002087!4.66e-30!119;CL:0000763!5.41e-30!112;CL:0000049!5.41e-30!112;CL:0000037!2.01e-26!172;CL:0000566!2.01e-26!172;CL:0000988!1.23e-24!182;CL:0002031!5.05e-22!124;CL:0002032!5.75e-22!165;CL:0000837!5.75e-22!165;CL:0000767!8.19e-18!3;CL:0000842!2.36e-17!3;CL:0000134!2.71e-13!358;CL:0000224!3.79e-13!4;CL:0002320!6.53e-13!365;CL:0000219!1.47e-11!390;CL:0000094!1.47e-11!8;CL:0000048!6.12e-10!430;CL:0000723!1.04e-09!436;CL:0000034!2.07e-09!444;CL:0000080!6.39e-09!6;CL:0000081!2.00e-08!11;CL:0000875!5.25e-08!3;CL:0002396!5.25e-08!3;CL:0000623!6.74e-08!3;CL:0000825!6.74e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002393;9.13e-52;6!CL:0002397;9.13e-52;6!CL:0000767;1.23e-37;3!CL:0000094;6.71e-25;8!CL:0000766;3.27e-20;69!CL:0000081;3.27e-18;11!CL:0000226;9.94e-18;3!CL:0000842;9.94e-18;3!CL:0000576;3.50e-17;48!CL:0000860;1.28e-08;33!CL:0002057;1.28e-08;33!CL:0000473;1.16e-07;39!CL:0000234;1.16e-07;39!CL:0000763;6.00e-07;100 | |ontology_enrichment_celltype_v019=CL:0002393;9.13e-52;6!CL:0002397;9.13e-52;6!CL:0000767;1.23e-37;3!CL:0000094;6.71e-25;8!CL:0000766;3.27e-20;69!CL:0000081;3.27e-18;11!CL:0000226;9.94e-18;3!CL:0000842;9.94e-18;3!CL:0000576;3.50e-17;48!CL:0000860;1.28e-08;33!CL:0002057;1.28e-08;33!CL:0000473;1.16e-07;39!CL:0000234;1.16e-07;39!CL:0000763;6.00e-07;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000767,8.41e-38,3;CL:0002393,1.42e-34,9;CL:0002397,1.42e-34,9;CL:0000766,1.30e-31,72;CL:0000860,2.09e-28,42;CL:0002057,2.09e-28,42;CL:0000094,6.30e-25,8;CL:0000473,1.01e-24,48;CL:0000234,1.01e-24,48;CL:0000738,1.69e-21,136;CL:0000763,1.18e-20,108;CL:0000049,1.18e-20,108;CL:0002194,1.48e-19,59;CL:0000576,1.48e-19,59;CL:0000040,1.48e-19,59;CL:0000559,1.48e-19,59;CL:0002009,6.87e-19,61;CL:0000081,3.13e-18,11;CL:0000226,9.14e-18,3;CL:0000842,9.14e-18,3;CL:0000839,2.15e-17,66;CL:0000557,4.02e-17,67;CL:0000037,4.19e-17,168;CL:0000988,3.76e-16,177;CL:0002087,5.35e-14,115;CL:0002032,2.39e-13,161;CL:0000837,2.39e-13,161;CL:0002031,4.32e-09,120;CL:0000134,3.77e-07,354;CL:0002320,5.67e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.88e-20;42 | |ontology_enrichment_development_v019=CL:0002057;1.88e-20;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!6.67e-31!80;UBERON:0002390!1.23e-30!102;UBERON:0003061!1.23e-30!102;UBERON:0001474!2.00e-28!86;UBERON:0002193!1.96e-27!112;UBERON:0004765!1.66e-23!101;UBERON:0001434!1.66e-23!101;UBERON:0002405!4.91e-22!115;UBERON:0002384!2.18e-12!375;UBERON:0002204!2.59e-12!167;UBERON:0003081!1.24e-11!216 | |ontology_enrichment_uberon=UBERON:0002371!6.67e-31!80;UBERON:0002390!1.23e-30!102;UBERON:0003061!1.23e-30!102;UBERON:0001474!2.00e-28!86;UBERON:0002193!1.96e-27!112;UBERON:0004765!1.66e-23!101;UBERON:0001434!1.66e-23!101;UBERON:0002405!4.91e-22!115;UBERON:0002384!2.18e-12!375;UBERON:0002204!2.59e-12!167;UBERON:0003081!1.24e-11!216 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.17e-16,98;UBERON:0003061,1.17e-16,98;UBERON:0002193,5.40e-15,108;UBERON:0002371,5.52e-15,76;UBERON:0001474,8.14e-14,82;UBERON:0004765,1.70e-12,90;UBERON:0002405,4.66e-12,93;UBERON:0001434,3.88e-11,100;UBERON:0003081,2.81e-07,203;UBERON:0002384,9.92e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,1.91914699048606,7.1215416725395,0,0,0,0,0,0,4.9859586767869,5.21415563422368,4.99125002646459,0,0,0,0.726991193897824,0.377875943688809,0.242584061187816,0,0,0,0,0,0,2.06847408441971,0,2.70852973188684,0.564727018627814,0,0.449446968890169,0,0.320929027076094,0,0,0,0,0,0,0,0,0.521482918420201,0.434377689410233,0,0,0.632924774881769,1.69004229049553,0.850417199860174,1.67726916406701,2.47122988522289,3.60424542819615,2.89306056054744,0.570025487482497,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.128343036279748,0,0,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89475236572042,4.52999821719095,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,1.91914699048606,7.1215416725395,0,0,0,0,0,0,4.9859586767869,5.21415563422368,4.99125002646459,0,0,0,0.726991193897824,0.377875943688809,0.242584061187816,0,0,0,0,0,0,2.06847408441971,0,2.70852973188684,0.564727018627814,0,0.449446968890169,0,0.320929027076094,0,0,0,0,0,0,0,0,0.521482918420201,0.434377689410233,0,0,0.632924774881769,1.69004229049553,0.850417199860174,1.67726916406701,2.47122988522289,3.60424542819615,2.89306056054744,0.570025487482497,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.128343036279748,0,0,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89475236572042,4.52999821719095,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr8:48504387..48504397,- | |short_description=p@chr8:48504387..48504397,- | ||
}} | }} |
Latest revision as of 18:40, 31 July 2015
Short description: | p@chr8:48504387..48504397, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:48504387..48504397, - |
Coexpression cluster: | C82_Basophils_CD14_Eosinophils_Natural_Peripheral_immature_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
basophil | 8.41e-38 | 3 |
intermediate monocyte | 1.42e-34 | 9 |
CD14-positive, CD16-positive monocyte | 1.42e-34 | 9 |
myeloid leukocyte | 1.30e-31 | 72 |
classical monocyte | 2.09e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.09e-28 | 42 |
granulocyte | 6.30e-25 | 8 |
defensive cell | 1.01e-24 | 48 |
phagocyte | 1.01e-24 | 48 |
leukocyte | 1.69e-21 | 136 |
myeloid cell | 1.18e-20 | 108 |
common myeloid progenitor | 1.18e-20 | 108 |
monopoietic cell | 1.48e-19 | 59 |
monocyte | 1.48e-19 | 59 |
monoblast | 1.48e-19 | 59 |
promonocyte | 1.48e-19 | 59 |
macrophage dendritic cell progenitor | 6.87e-19 | 61 |
blood cell | 3.13e-18 | 11 |
single nucleate cell | 9.14e-18 | 3 |
mononuclear cell | 9.14e-18 | 3 |
myeloid lineage restricted progenitor cell | 2.15e-17 | 66 |
granulocyte monocyte progenitor cell | 4.02e-17 | 67 |
hematopoietic stem cell | 4.19e-17 | 168 |
hematopoietic cell | 3.76e-16 | 177 |
nongranular leukocyte | 5.35e-14 | 115 |
hematopoietic oligopotent progenitor cell | 2.39e-13 | 161 |
hematopoietic multipotent progenitor cell | 2.39e-13 | 161 |
hematopoietic lineage restricted progenitor cell | 4.32e-09 | 120 |
mesenchymal cell | 3.77e-07 | 354 |
connective tissue cell | 5.67e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.17e-16 | 98 |
blood island | 1.17e-16 | 98 |
hemolymphoid system | 5.40e-15 | 108 |
bone marrow | 5.52e-15 | 76 |
bone element | 8.14e-14 | 82 |
skeletal element | 1.70e-12 | 90 |
immune system | 4.66e-12 | 93 |
skeletal system | 3.88e-11 | 100 |
lateral plate mesoderm | 2.81e-07 | 203 |
connective tissue | 9.92e-07 | 371 |