FFCP PHASE1:Hg19::chr1:183195929..183195945,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:183195929..183195945,+ | |||
|coexpression_cluster_id=C268 | |coexpression_cluster_id=C268 | ||
|description=CAGE_peak_at_chr1:183195929..183195945,+ | |description=CAGE_peak_at_chr1:183195929..183195945,+ | ||
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|ontology_enrichment_celltype=CL:0000066!9.17e-26!254;CL:0002368!5.31e-23!13;CL:0002076!1.87e-21!43;CL:0002159!1.82e-14!13;CL:0000223!2.92e-14!59;CL:0000244!1.96e-13!4;CL:0000731!1.96e-13!4;CL:0002202!2.57e-12!9;CL:0002632!2.57e-12!9;CL:0002077!1.09e-10!33;CL:0002328!1.70e-10!3;CL:0002166!1.92e-10!3;CL:0002621!2.32e-10!3;CL:0000063!5.29e-08!578;CL:0002327!1.05e-07!4;CL:0000076!5.10e-07!62;CL:0002536!5.10e-07!2;CL:0000575!5.93e-07!2;CL:0000220!7.27e-07!246;CL:0002321!9.56e-07!248 | |ontology_enrichment_celltype=CL:0000066!9.17e-26!254;CL:0002368!5.31e-23!13;CL:0002076!1.87e-21!43;CL:0002159!1.82e-14!13;CL:0000223!2.92e-14!59;CL:0000244!1.96e-13!4;CL:0000731!1.96e-13!4;CL:0002202!2.57e-12!9;CL:0002632!2.57e-12!9;CL:0002077!1.09e-10!33;CL:0002328!1.70e-10!3;CL:0002166!1.92e-10!3;CL:0002621!2.32e-10!3;CL:0000063!5.29e-08!578;CL:0002327!1.05e-07!4;CL:0000076!5.10e-07!62;CL:0002536!5.10e-07!2;CL:0000575!5.93e-07!2;CL:0000220!7.27e-07!246;CL:0002321!9.56e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0002368;6.75e-34;13!CL:0000244;3.06e-21;4!CL:0000731;3.06e-21;4!CL:0002076;8.15e-19;42!CL:0002202;1.67e-16;9!CL:0002632;1.67e-16;9!CL:0002159;5.15e-16;14!CL:0002328;2.25e-13;3!CL:0002621;3.36e-13;3!CL:0002166;3.68e-13;3!CL:0002231;3.68e-13;3!CL:0000307;5.47e-13;3!CL:0002327;8.19e-10;4!CL:0000362;1.54e-09;9!CL:0000312;3.78e-08;5!CL:0000240;6.29e-07;6!CL:0000311;6.29e-07;6!CL:0000079;6.29e-07;6!CL:0000237;6.29e-07;6 | |ontology_enrichment_celltype_v019=CL:0002368;6.75e-34;13!CL:0000244;3.06e-21;4!CL:0000731;3.06e-21;4!CL:0002076;8.15e-19;42!CL:0002202;1.67e-16;9!CL:0002632;1.67e-16;9!CL:0002159;5.15e-16;14!CL:0002328;2.25e-13;3!CL:0002621;3.36e-13;3!CL:0002166;3.68e-13;3!CL:0002231;3.68e-13;3!CL:0000307;5.47e-13;3!CL:0002327;8.19e-10;4!CL:0000362;1.54e-09;9!CL:0000312;3.78e-08;5!CL:0000240;6.29e-07;6!CL:0000311;6.29e-07;6!CL:0000079;6.29e-07;6!CL:0000237;6.29e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002368,5.29e-34,13;CL:0002076,1.14e-24,42;CL:0000244,2.67e-21,4;CL:0000731,2.67e-21,4;CL:0000223,2.14e-17,58;CL:0002202,1.45e-16,9;CL:0002632,1.45e-16,9;CL:0002159,4.46e-16,14;CL:0000066,2.64e-14,253;CL:0002328,2.63e-13,3;CL:0000068,3.79e-13,3;CL:0000069,3.79e-13,3;CL:0002166,3.79e-13,3;CL:0002231,3.79e-13,3;CL:0000307,3.79e-13,3;CL:0000377,3.79e-13,3;CL:0002621,4.03e-13,3;CL:0002327,9.79e-10,4;CL:0000362,1.33e-09,9;CL:0000312,3.65e-08,5;CL:0000240,6.11e-07,6;CL:0000311,6.11e-07,6;CL:0000079,6.11e-07,6;CL:0000237,6.11e-07,6;CL:0000036,6.11e-07,6;CL:0000357,6.11e-07,6;CL:0000114,6.11e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000377;5.47e-13;3!CL:0000223;3.46e-12;58!CL:0000357;6.29e-07;6!CL:0000114;6.29e-07;6 | |ontology_enrichment_development_v019=CL:0000377;5.47e-13;3!CL:0000223;3.46e-12;58!CL:0000357;6.29e-07;6!CL:0000114;6.29e-07;6 | ||
|ontology_enrichment_disease=DOID:1749!9.21e-09!14 | |ontology_enrichment_disease=DOID:1749!9.21e-09!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!9.70e-11!5;UBERON:0004815!1.70e-10!3;UBERON:0002031!1.70e-10!3;UBERON:0001949!2.32e-10!3;UBERON:0005910!6.13e-09!6;UBERON:0002185!5.91e-08!4;UBERON:0001708!6.48e-08!4;UBERON:0001704!6.48e-08!4;UBERON:0001911!1.05e-07!4;UBERON:0005333!1.05e-07!4;UBERON:0008425!1.05e-07!4;UBERON:0005311!1.05e-07!4;UBERON:0005911!1.11e-07!82;UBERON:0007196!1.24e-07!14;UBERON:0001558!1.24e-07!14;UBERON:0001004!3.40e-07!72;UBERON:0000305!5.48e-07!7;UBERON:0005631!6.12e-07!14;UBERON:0000158!6.12e-07!14 | |ontology_enrichment_uberon=UBERON:0000365!9.70e-11!5;UBERON:0004815!1.70e-10!3;UBERON:0002031!1.70e-10!3;UBERON:0001949!2.32e-10!3;UBERON:0005910!6.13e-09!6;UBERON:0002185!5.91e-08!4;UBERON:0001708!6.48e-08!4;UBERON:0001704!6.48e-08!4;UBERON:0001911!1.05e-07!4;UBERON:0005333!1.05e-07!4;UBERON:0008425!1.05e-07!4;UBERON:0005311!1.05e-07!4;UBERON:0005911!1.11e-07!82;UBERON:0007196!1.24e-07!14;UBERON:0001558!1.24e-07!14;UBERON:0001004!3.40e-07!72;UBERON:0000305!5.48e-07!7;UBERON:0005631!6.12e-07!14;UBERON:0000158!6.12e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0000486;5.40e-19;12!UBERON:0000365;4.03e-17;5!UBERON:0005910;2.29e-14;6!UBERON:0004815;2.25e-13;3!UBERON:0002031;2.25e-13;3!UBERON:0001949;3.36e-13;3!UBERON:0001708;4.25e-10;4!UBERON:0008895;4.25e-10;4!UBERON:0007196;5.52e-10;15!UBERON:0001558;5.52e-10;15!UBERON:0001911;8.19e-10;4!UBERON:0005911;1.50e-09;36!UBERON:0002185;2.23e-08;5!UBERON:0011159;2.99e-08;5!UBERON:0000065;3.08e-07;44!UBERON:0010371;6.28e-07;31!UBERON:0004807;6.61e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0000486;5.40e-19;12!UBERON:0000365;4.03e-17;5!UBERON:0005910;2.29e-14;6!UBERON:0004815;2.25e-13;3!UBERON:0002031;2.25e-13;3!UBERON:0001949;3.36e-13;3!UBERON:0001708;4.25e-10;4!UBERON:0008895;4.25e-10;4!UBERON:0007196;5.52e-10;15!UBERON:0001558;5.52e-10;15!UBERON:0001911;8.19e-10;4!UBERON:0005911;1.50e-09;36!UBERON:0002185;2.23e-08;5!UBERON:0011159;2.99e-08;5!UBERON:0000065;3.08e-07;44!UBERON:0010371;6.28e-07;31!UBERON:0004807;6.61e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,3.62e-17,5;UBERON:0005910,2.09e-14,6;UBERON:0004815,2.63e-13,3;UBERON:0002031,2.63e-13,3;UBERON:0001949,4.03e-13,3;UBERON:0001708,4.35e-10,4;UBERON:0008895,4.35e-10,4;UBERON:0007196,5.08e-10,15;UBERON:0001558,5.08e-10,15;UBERON:0001911,9.79e-10,4;UBERON:0005333,9.79e-10,4;UBERON:0008425,9.79e-10,4;UBERON:0005311,9.79e-10,4;UBERON:0004119,7.93e-09,160;UBERON:0000925,7.93e-09,160;UBERON:0006595,7.93e-09,160;UBERON:0001004,8.46e-09,74;UBERON:0005153,2.26e-08,37;UBERON:0002185,2.45e-08,5;UBERON:0011159,3.05e-08,5;UBERON:0005911,8.83e-08,82;UBERON:0000065,1.21e-07,54;UBERON:0010188,5.26e-07,6;UBERON:0002539,5.26e-07,6;UBERON:0008816,5.26e-07,6 | |||
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| ||
|short_description=p@chr1:183195929..183195945,+ | |short_description=p@chr1:183195929..183195945,+ | ||
}} | }} |
Latest revision as of 01:08, 28 July 2015
Short description: | p@chr1:183195929..183195945, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:183195929..183195945, + |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 5.29e-34 | 13 |
endo-epithelial cell | 1.14e-24 | 42 |
transitional epithelial cell | 2.67e-21 | 4 |
urothelial cell | 2.67e-21 | 4 |
endodermal cell | 2.14e-17 | 58 |
epithelial cell of tracheobronchial tree | 1.45e-16 | 9 |
epithelial cell of lower respiratory tract | 1.45e-16 | 9 |
general ecto-epithelial cell | 4.46e-16 | 14 |
epithelial cell | 2.64e-14 | 253 |
bronchial epithelial cell | 2.63e-13 | 3 |
duct epithelial cell | 3.79e-13 | 3 |
branched duct epithelial cell | 3.79e-13 | 3 |
epithelial cell of Malassez | 3.79e-13 | 3 |
epithelial cell of prostate | 3.79e-13 | 3 |
tracheal epithelial cell | 3.79e-13 | 3 |
tracheoblast | 3.79e-13 | 3 |
gingival epithelial cell | 4.03e-13 | 3 |
mammary gland epithelial cell | 9.79e-10 | 4 |
epidermal cell | 1.33e-09 | 9 |
keratinocyte | 3.65e-08 | 5 |
stratified squamous epithelial cell | 6.11e-07 | 6 |
keratin accumulating cell | 6.11e-07 | 6 |
stratified epithelial cell | 6.11e-07 | 6 |
keratinizing barrier epithelial cell | 6.11e-07 | 6 |
epithelial fate stem cell | 6.11e-07 | 6 |
stratified epithelial stem cell | 6.11e-07 | 6 |
surface ectodermal cell | 6.11e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
urothelium | 3.62e-17 | 5 |
transitional epithelium | 2.09e-14 | 6 |
lower respiratory tract epithelium | 2.63e-13 | 3 |
epithelium of bronchus | 2.63e-13 | 3 |
gingival epithelium | 4.03e-13 | 3 |
jaw skeleton | 4.35e-10 | 4 |
splanchnocranium | 4.35e-10 | 4 |
tracheobronchial tree | 5.08e-10 | 15 |
lower respiratory tract | 5.08e-10 | 15 |
mammary gland | 9.79e-10 | 4 |
mammary bud | 9.79e-10 | 4 |
mammary ridge | 9.79e-10 | 4 |
mammary placode | 9.79e-10 | 4 |
endoderm-derived structure | 7.93e-09 | 160 |
endoderm | 7.93e-09 | 160 |
presumptive endoderm | 7.93e-09 | 160 |
respiratory system | 8.46e-09 | 74 |
epithelial bud | 2.26e-08 | 37 |
bronchus | 2.45e-08 | 5 |
primary subdivision of cranial skeletal system | 3.05e-08 | 5 |
endo-epithelium | 8.83e-08 | 82 |
respiratory tract | 1.21e-07 | 54 |
protuberance | 5.26e-07 | 6 |
pharyngeal arch | 5.26e-07 | 6 |
embryonic head | 5.26e-07 | 6 |