FFCP PHASE1:Hg19::chr9:132549146..132549157,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:132549146..132549157,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_at_chr9:132549146..132549157,+ | |description=CAGE_peak_at_chr9:132549146..132549157,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!4.61e-20!5;CL:0000066!1.30e-16!254;CL:0000039!3.55e-09!7;CL:0000586!3.55e-09!7 | |ontology_enrichment_celltype=CL:0002322!4.61e-20!5;CL:0000066!1.30e-16!254;CL:0000039!3.55e-09!7;CL:0000586!3.55e-09!7 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.16e-66;5!CL:0000039;3.29e-30;7!CL:0000586;3.29e-30;7!CL:0002321;3.71e-22;15!CL:0000540;4.86e-21;6!CL:0000404;4.86e-21;6!CL:0000148;1.13e-12;10!CL:0000147;3.25e-09;14 | |ontology_enrichment_celltype_v019=CL:0002322;4.16e-66;5!CL:0000039;3.29e-30;7!CL:0000586;3.29e-30;7!CL:0002321;3.71e-22;15!CL:0000540;4.86e-21;6!CL:0000404;4.86e-21;6!CL:0000148;1.13e-12;10!CL:0000147;3.25e-09;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.12e-66,5;CL:0000039,4.46e-30,7;CL:0000586,4.46e-30,7;CL:0000540,4.86e-21,6;CL:0000031,4.86e-21,6;CL:0000404,4.86e-21,6;CL:0000047,6.02e-16,8;CL:0000148,1.00e-12,10;CL:0000541,1.00e-12,10;CL:0000147,2.99e-09,14;CL:0000133,1.12e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.83e-21;10!UBERON:0005564;2.83e-21;10!CL:0000031;4.86e-21;6 | |ontology_enrichment_development_v019=UBERON:0009117;2.83e-21;10!UBERON:0005564;2.83e-21;10!CL:0000031;4.86e-21;6 | ||
|ontology_enrichment_disease=DOID:305!4.38e-29!106;DOID:0050687!9.75e-26!143;DOID:162!3.82e-15!235;DOID:14566!1.23e-14!239;DOID:1749!7.60e-09!14;DOID:3493!1.50e-08!2;DOID:3095!1.51e-07!22;DOID:2994!1.51e-07!22 | |ontology_enrichment_disease=DOID:305!4.38e-29!106;DOID:0050687!9.75e-26!143;DOID:162!3.82e-15!235;DOID:14566!1.23e-14!239;DOID:1749!7.60e-09!14;DOID:3493!1.50e-08!2;DOID:3095!1.51e-07!22;DOID:2994!1.51e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;6.83e-15;22!DOID:2994;6.83e-15;22!DOID:6193;2.10e-14;1!DOID:3350;7.52e-08;2 | |ontology_enrichment_disease_v019=DOID:3095;6.83e-15;22!DOID:2994;6.83e-15;22!DOID:6193;2.10e-14;1!DOID:3350;7.52e-08;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,7.69e-15,22;DOID:2994,7.69e-15,22;DOID:6193,1.84e-14,1;DOID:3350,7.03e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.08e-09!9;UBERON:0003343!1.22e-08!4;UBERON:0004785!1.22e-08!4;UBERON:0000473!5.02e-08!8;UBERON:0004176!2.45e-07!22;UBERON:0003729!5.42e-07!5 | |ontology_enrichment_uberon=UBERON:0001737!1.08e-09!9;UBERON:0003343!1.22e-08!4;UBERON:0004785!1.22e-08!4;UBERON:0000473!5.02e-08!8;UBERON:0004176!2.45e-07!22;UBERON:0003729!5.42e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.72e-26;8!UBERON:0003135;2.24e-19;11!UBERON:0000922;3.24e-13;49!UBERON:0000991;2.70e-10;21!UBERON:0003101;7.73e-10;22!UBERON:0000079;7.73e-10;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;1.72e-26;8!UBERON:0003135;2.24e-19;11!UBERON:0000922;3.24e-13;49!UBERON:0000991;2.70e-10;21!UBERON:0003101;7.73e-10;22!UBERON:0000079;7.73e-10;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.25e-26,8;UBERON:0003135,2.72e-19,11;UBERON:0000991,2.98e-10,21;UBERON:0009196,2.98e-10,21;UBERON:0009117,2.98e-10,21;UBERON:0005564,2.98e-10,21;UBERON:0004176,8.49e-10,22;UBERON:0003101,8.49e-10,22;UBERON:0000079,8.49e-10,22 | |||
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| ||
|short_description=p@chr9:132549146..132549157,+ | |short_description=p@chr9:132549146..132549157,+ | ||
}} | }} |
Latest revision as of 23:28, 31 July 2015
Short description: | p@chr9:132549146..132549157, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:132549146..132549157, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.12e-66 | 5 |
germ line cell | 4.46e-30 | 7 |
germ cell | 4.46e-30 | 7 |
neuron | 4.86e-21 | 6 |
neuroblast | 4.86e-21 | 6 |
electrically signaling cell | 4.86e-21 | 6 |
neuronal stem cell | 6.02e-16 | 8 |
melanocyte | 1.00e-12 | 10 |
melanoblast | 1.00e-12 | 10 |
pigment cell | 2.99e-09 | 14 |
neurectodermal cell | 1.12e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 2.25e-26 | 8 |
male reproductive organ | 2.72e-19 | 11 |
gonad | 2.98e-10 | 21 |
indifferent external genitalia | 2.98e-10 | 21 |
indifferent gonad | 2.98e-10 | 21 |
gonad primordium | 2.98e-10 | 21 |
external genitalia | 8.49e-10 | 22 |
male organism | 8.49e-10 | 22 |
male reproductive system | 8.49e-10 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.69e-15 | 22 |
germ cell cancer | 7.69e-15 | 22 |
epithelioid sarcoma | 1.84e-14 | 1 |
mesenchymal cell neoplasm | 7.03e-08 | 2 |