FFCP PHASE1:Hg19::chr3:112298821..112298852,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:112298821..112298852,+ | |||
|coexpression_cluster_id=C82 | |coexpression_cluster_id=C82 | ||
|description=CAGE_peak_at_chr3:112298821..112298852,+ | |description=CAGE_peak_at_chr3:112298821..112298852,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002057!3.75e-42!42;CL:0000860!8.85e-39!45;CL:0000766!3.15e-35!76;CL:0000839!2.78e-29!70;CL:0002194!7.74e-29!63;CL:0000576!7.74e-29!63;CL:0000040!7.74e-29!63;CL:0000559!7.74e-29!63;CL:0000557!9.57e-29!71;CL:0002009!1.07e-27!65;CL:0000763!1.85e-23!112;CL:0000049!1.85e-23!112;CL:0002393!4.67e-23!9;CL:0002397!4.67e-23!9;CL:0000738!9.81e-23!140;CL:0002320!7.83e-22!365;CL:0000134!9.92e-21!358;CL:0000037!1.45e-18!172;CL:0000566!1.45e-18!172;CL:0002087!4.62e-18!119;CL:0000219!1.86e-17!390;CL:0002031!4.73e-17!124;CL:0000988!6.70e-17!182;CL:0002032!1.95e-16!165;CL:0000837!1.95e-16!165;CL:0000048!3.82e-15!430;CL:0000723!1.06e-14!436;CL:0000034!3.97e-14!444;CL:0000569!2.06e-10!4;CL:0000011!2.06e-10!4;CL:0000767!1.36e-09!3;CL:0000875!2.41e-09!3;CL:0002396!2.41e-09!3;CL:0002371!1.84e-08!591;CL:0000063!5.14e-08!578;CL:0000144!4.88e-07!625 | |ontology_enrichment_celltype=CL:0002057!3.75e-42!42;CL:0000860!8.85e-39!45;CL:0000766!3.15e-35!76;CL:0000839!2.78e-29!70;CL:0002194!7.74e-29!63;CL:0000576!7.74e-29!63;CL:0000040!7.74e-29!63;CL:0000559!7.74e-29!63;CL:0000557!9.57e-29!71;CL:0002009!1.07e-27!65;CL:0000763!1.85e-23!112;CL:0000049!1.85e-23!112;CL:0002393!4.67e-23!9;CL:0002397!4.67e-23!9;CL:0000738!9.81e-23!140;CL:0002320!7.83e-22!365;CL:0000134!9.92e-21!358;CL:0000037!1.45e-18!172;CL:0000566!1.45e-18!172;CL:0002087!4.62e-18!119;CL:0000219!1.86e-17!390;CL:0002031!4.73e-17!124;CL:0000988!6.70e-17!182;CL:0002032!1.95e-16!165;CL:0000837!1.95e-16!165;CL:0000048!3.82e-15!430;CL:0000723!1.06e-14!436;CL:0000034!3.97e-14!444;CL:0000569!2.06e-10!4;CL:0000011!2.06e-10!4;CL:0000767!1.36e-09!3;CL:0000875!2.41e-09!3;CL:0002396!2.41e-09!3;CL:0002371!1.84e-08!591;CL:0000063!5.14e-08!578;CL:0000144!4.88e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0000767;4.17e-30;3!CL:0000875;2.64e-29;3!CL:0002396;2.64e-29;3!CL:0000576;7.94e-22;48!CL:0000766;5.10e-21;69!CL:0000094;5.56e-20;8!CL:0002393;1.00e-14;6!CL:0002397;1.00e-14;6!CL:0000081;1.34e-14;11!CL:0000860;7.89e-13;33!CL:0002057;7.89e-13;33!CL:0000763;1.52e-11;100!CL:0000037;1.15e-10;1!CL:0001024;1.15e-10;1!CL:0000473;6.69e-09;39!CL:0000234;6.69e-09;39 | |ontology_enrichment_celltype_v019=CL:0000767;4.17e-30;3!CL:0000875;2.64e-29;3!CL:0002396;2.64e-29;3!CL:0000576;7.94e-22;48!CL:0000766;5.10e-21;69!CL:0000094;5.56e-20;8!CL:0002393;1.00e-14;6!CL:0002397;1.00e-14;6!CL:0000081;1.34e-14;11!CL:0000860;7.89e-13;33!CL:0002057;7.89e-13;33!CL:0000763;1.52e-11;100!CL:0000037;1.15e-10;1!CL:0001024;1.15e-10;1!CL:0000473;6.69e-09;39!CL:0000234;6.69e-09;39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.25e-39,72;CL:0002393,2.10e-37,9;CL:0002397,2.10e-37,9;CL:0000860,6.40e-36,42;CL:0002057,6.40e-36,42;CL:0000473,3.46e-31,48;CL:0000234,3.46e-31,48;CL:0000767,3.78e-30,3;CL:0000875,2.91e-29,3;CL:0002396,2.91e-29,3;CL:0000763,1.11e-25,108;CL:0000049,1.11e-25,108;CL:0000839,1.97e-25,66;CL:0000557,5.01e-25,67;CL:0002194,1.48e-24,59;CL:0000576,1.48e-24,59;CL:0000040,1.48e-24,59;CL:0000559,1.48e-24,59;CL:0002009,1.07e-23,61;CL:0000094,5.30e-20,8;CL:0000738,6.97e-20,136;CL:0000037,1.30e-17,168;CL:0000988,1.40e-16,177;CL:0002032,2.16e-16,161;CL:0000837,2.16e-16,161;CL:0000081,1.29e-14,11;CL:0002031,4.29e-13,120;CL:0002087,1.04e-11,115;CL:0001024,9.05e-11,1;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000219,7.44e-08,386;CL:0000048,7.57e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;2.15e-25;42!CL:0000049;1.32e-07;108 | |ontology_enrichment_development_v019=CL:0002057;2.15e-25;42!CL:0000049;1.32e-07;108 | ||
|ontology_enrichment_disease=DOID:2394!2.19e-10!14 | |ontology_enrichment_disease=DOID:2394!2.19e-10!14 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.97e-30!80;UBERON:0001474!2.04e-29!86;UBERON:0004765!3.59e-25!101;UBERON:0001434!3.59e-25!101;UBERON:0002390!6.67e-25!102;UBERON:0003061!6.67e-25!102;UBERON:0002193!8.88e-22!112;UBERON:0002384!8.63e-21!375;UBERON:0002405!2.93e-18!115;UBERON:0003081!1.95e-12!216;UBERON:0002204!2.80e-12!167 | |ontology_enrichment_uberon=UBERON:0002371!1.97e-30!80;UBERON:0001474!2.04e-29!86;UBERON:0004765!3.59e-25!101;UBERON:0001434!3.59e-25!101;UBERON:0002390!6.67e-25!102;UBERON:0003061!6.67e-25!102;UBERON:0002193!8.88e-22!112;UBERON:0002384!8.63e-21!375;UBERON:0002405!2.93e-18!115;UBERON:0003081!1.95e-12!216;UBERON:0002204!2.80e-12!167 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.07e-25,76;UBERON:0001474,3.01e-23,82;UBERON:0004765,5.34e-21,90;UBERON:0002405,2.97e-20,93;UBERON:0002390,4.12e-19,98;UBERON:0003061,4.12e-19,98;UBERON:0001434,1.10e-18,100;UBERON:0002193,3.85e-17,108;UBERON:0002204,2.86e-10,167;UBERON:0003081,2.62e-09,203;UBERON:0002384,2.34e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,4.72037132218685,4.98978217526377,6.65709330259127,0,0,0,0,0,1.46800219667424,0.553995408531877,0.200544447470142,1.73608696572681,0,0,0,0.290796477559129,0,1.21292030593908,0.232429036905685,0,0.309706370895104,0,0.512321413058201,2.12834006899727,0,0.645484683583826,2.70852973188684,0,0,0.898893937780338,0,0.320929027076094,1.91801137739712,0,0,0.426224750532694,0.580418477257168,0,1.24564449799115,0.251248665256743,0,2.38907729175628,0,0.368277635987565,1.26584954976354,1.05627643155971,0.212604299965044,2.30624510059213,0,0,0.32145117339416,2.56511469367124,1.19350006319454,4.38393969035121,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75560528296651,0,0,0,1.19168262731897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0.710019185033229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16179930125442,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0,0,0,0,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,1.03850885836724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0.144269212976445,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0.50313580350515,0.889811221596536,0.686520205190771,0.453692771289717,0.15543720058278,0.443565449968902,0,0,0.310525913752519,0.414706207840855,0.53168342911599,0,0.300515217994437,0.380805212168795,0.406870733204662,0.363697318405119,0,0.928067519756987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,4.72037132218685,4.98978217526377,6.65709330259127,0,0,0,0,0,1.46800219667424,0.553995408531877,0.200544447470142,1.73608696572681,0,0,0,0.290796477559129,0,1.21292030593908,0.232429036905685,0,0.309706370895104,0,0.512321413058201,2.12834006899727,0,0.645484683583826,2.70852973188684,0,0,0.898893937780338,0,0.320929027076094,1.91801137739712,0,0,0.426224750532694,0.580418477257168,0,1.24564449799115,0.251248665256743,0,2.38907729175628,0,0.368277635987565,1.26584954976354,1.05627643155971,0.212604299965044,2.30624510059213,0,0,0.32145117339416,2.56511469367124,1.19350006319454,4.38393969035121,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.75560528296651,0,0,0,1.19168262731897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0.710019185033229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16179930125442,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0,0,0,0,0,0.306923946576125,0,0.128139149255701,0,0,0,0,0,0,1.03850885836724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0.144269212976445,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0.50313580350515,0.889811221596536,0.686520205190771,0.453692771289717,0.15543720058278,0.443565449968902,0,0,0.310525913752519,0.414706207840855,0.53168342911599,0,0.300515217994437,0.380805212168795,0.406870733204662,0.363697318405119,0,0.928067519756987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:112298821..112298852,+ | |short_description=p@chr3:112298821..112298852,+ | ||
}} | }} |
Latest revision as of 14:17, 29 July 2015
Short description: | p@chr3:112298821..112298852, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:112298821..112298852, + |
Coexpression cluster: | C82_Basophils_CD14_Eosinophils_Natural_Peripheral_immature_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.07e-25 | 76 |
bone element | 3.01e-23 | 82 |
skeletal element | 5.34e-21 | 90 |
immune system | 2.97e-20 | 93 |
hematopoietic system | 4.12e-19 | 98 |
blood island | 4.12e-19 | 98 |
skeletal system | 1.10e-18 | 100 |
hemolymphoid system | 3.85e-17 | 108 |
musculoskeletal system | 2.86e-10 | 167 |
lateral plate mesoderm | 2.62e-09 | 203 |
connective tissue | 2.34e-08 | 371 |