FFCP PHASE1:Hg19::chr6:45390300..45390335,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=860 | |EntrezGene=860 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10472 | |HGNC=10472 | ||
|TSSclassifier=strong | |||
|UniProt=Q13950,F8W8U5 | |UniProt=Q13950,F8W8U5 | ||
|association_with_transcript=386bp_to_ENST00000359524,ENST00000371432,NM_004348,uc003oxt.2_5end | |association_with_transcript=386bp_to_ENST00000359524,ENST00000371432,NM_004348,uc003oxt.2_5end | ||
|cluster_id=chr6:45390300..45390335,+ | |||
|coexpression_cluster_id=C44 | |coexpression_cluster_id=C44 | ||
|description=CAGE_peak_4_at_RUNX2_5end | |description=CAGE_peak_4_at_RUNX2_5end | ||
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|ontology_enrichment_celltype=CL:0000738!1.04e-09!140;CL:0000084!2.61e-09!25;CL:0000827!2.61e-09!25;CL:0000988!3.10e-09!182;CL:0000791!4.81e-09!18;CL:0000789!4.81e-09!18;CL:0002420!4.81e-09!18;CL:0002419!4.81e-09!18;CL:0000790!4.81e-09!18;CL:0000037!1.39e-08!172;CL:0000566!1.39e-08!172;CL:0002320!1.23e-07!365;CL:0000134!3.45e-07!358;CL:0000625!3.82e-07!11;CL:0002032!4.74e-07!165;CL:0000837!4.74e-07!165;CL:0000766!9.64e-07!76 | |ontology_enrichment_celltype=CL:0000738!1.04e-09!140;CL:0000084!2.61e-09!25;CL:0000827!2.61e-09!25;CL:0000988!3.10e-09!182;CL:0000791!4.81e-09!18;CL:0000789!4.81e-09!18;CL:0002420!4.81e-09!18;CL:0002419!4.81e-09!18;CL:0000790!4.81e-09!18;CL:0000037!1.39e-08!172;CL:0000566!1.39e-08!172;CL:0002320!1.23e-07!365;CL:0000134!3.45e-07!358;CL:0000625!3.82e-07!11;CL:0002032!4.74e-07!165;CL:0000837!4.74e-07!165;CL:0000766!9.64e-07!76 | ||
|ontology_enrichment_celltype_v019=CL:0000084;5.28e-11;25!CL:0000791;1.89e-10;18!CL:0000789;1.89e-10;18!CL:0002419;1.89e-10;18!CL:0000625;1.25e-08;11!CL:0000094;1.56e-07;8 | |ontology_enrichment_celltype_v019=CL:0000084;5.28e-11;25!CL:0000791;1.89e-10;18!CL:0000789;1.89e-10;18!CL:0002419;1.89e-10;18!CL:0000625;1.25e-08;11!CL:0000094;1.56e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.39e-11,177;CL:0000084,5.49e-11,25;CL:0000827,5.49e-11,25;CL:0000738,9.38e-11,136;CL:0000791,1.31e-10,18;CL:0000789,1.31e-10,18;CL:0002420,1.31e-10,18;CL:0002419,1.31e-10,18;CL:0000790,1.31e-10,18;CL:0000037,3.66e-10,168;CL:0000625,9.12e-09,11;CL:0002032,4.23e-08,161;CL:0000837,4.23e-08,161;CL:0000094,1.75e-07,8;CL:0000219,2.32e-07,386;CL:0000134,2.95e-07,354;CL:0002320,3.01e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000790;1.89e-10;18 | |ontology_enrichment_development_v019=CL:0000790;1.89e-10;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.48e-09!102;UBERON:0003061!2.48e-09!102;UBERON:0002193!4.71e-08!112;UBERON:0000178!5.56e-08!15;UBERON:0000179!5.56e-08!15;UBERON:0000463!5.56e-08!15;UBERON:0002384!1.29e-07!375 | |ontology_enrichment_uberon=UBERON:0002390!2.48e-09!102;UBERON:0003061!2.48e-09!102;UBERON:0002193!4.71e-08!112;UBERON:0000178!5.56e-08!15;UBERON:0000179!5.56e-08!15;UBERON:0000463!5.56e-08!15;UBERON:0002384!1.29e-07!375 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.42e-10;15!UBERON:0000179;2.42e-10;15!UBERON:0000463;2.42e-10;15!UBERON:0002390;6.93e-08;32 | |ontology_enrichment_uberon_v019=UBERON:0000178;2.42e-10;15!UBERON:0000179;2.42e-10;15!UBERON:0000463;2.42e-10;15!UBERON:0002390;6.93e-08;32 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.83e-10,15;UBERON:0000179,2.83e-10,15;UBERON:0000463,2.83e-10,15;UBERON:0002390,1.15e-08,98;UBERON:0003061,1.15e-08,98;UBERON:0002193,3.22e-08,108;UBERON:0002384,2.45e-07,371 | |||
|phase1_expression=0.181678379270557,1.2846031433459,0.281908808191942,1.0007329835313,0,0.872338524100369,0,0,0,1.22866968250754,3.48900583986214,1.09220686065086,0.791300934685361,0.618831764800233,0.331397375727916,0,2.41077811209591,1.46062018077475,0.487932798790507,16.3751007242128,9.79203317972414,8.46327747990837,2.86235987131057,3.28498620174922,1.63205431473244,0,0,0,3.54027849164014,7.29275856384704,4.33485145285013,0,0.30120591877825,0,0,0,8.80801318004542,1.66198622559563,2.80762226458198,1.95309783644267,0.895661896959697,1.94336199611388,1.54545340580512,2.61716829803216,2.64513160582167,4.12392904019288,0.929716147622738,2.05583944010913,0.929119112685311,0.28769239232215,0.768482119587302,0.945928919554341,1.37898272294647,3.87290810150296,0,1.31769637679823,1.63743690034707,2.02251136000576,1.22433556948361,1.28371610830437,1.91801137739712,2.30895910130701,0.997318288108159,2.55734850319616,1.7412554317715,1.70215567407342,0.622822248995575,0.502497330513487,0.521482918420201,0.65156653411535,4.84319602106695,2.94622108790052,1.26584954976354,0.211255286311942,0.850417199860174,0.209658645508376,1.01095768031846,0.901061357049038,1.76798145366788,0.570025487482497,0.59675003159727,0.365328307529268,0,0.546138611262131,0,0.853460445133014,0.400395987036012,0,0.661044872784862,0.954053754535364,0,1.17447437874188,1.14681968437569,19.8256992868539,11.7706798226123,7.63813845847723,4.91774425284583,5.10913991573914,7.40165396398233,1.83905144929746,0.651844533267181,0,1.94826728407911,12.9236129986801,1.76763544484902,3.54454231333794,4.87446954777028,2.81800903396485,6.89314542067355,4.1109476150919,4.42160028457357,2.02862160014537,0.889719378972363,1.87278579662799,2.09071047609954,11.6708622978493,7.2811893784365,5.15441168223945,6.83153168452658,3.50421955756506,2.60433381542567,3.8018081777935,5.72185452495537,7.80718328041952,11.2437653897111,4.49876778883632,4.92676798152628,12.7012248231581,9.89528724398977,3.62061009706997,0,0.670700859703636,0,0,0,0,0,0,5.67208902984407,6.65188192387692,7.99296549807447,0.196468613246569,0,0,0.324547393654683,0.174129737299267,0,109.705687180457,73.7873434906365,77.2631602765495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27121669744253,15.511210565933,0,0,0.25326102332916,1.05927344650575,0.860509862246441,1.06400514659507,1.68203280042692,1.06748995729705,3.45334567784024,0.622422070799533,1.21239604862719,0.326923806226917,1.51357427644931,0,1.87457145467037,0.312160076830321,0,0.149448680551801,3.87533845524424,2.91371299862637,2.94946694074722,1.02077085627447,1.47401180774122,1.54988671763648,1.18800285728205,1.97813543422845,3.64064544775211,1.43723628363248,1.17835279767846,2.25213335769535,0.277064115484183,2.19488810440419,0.612975591598039,0.901428353439581,0.226864366320042,1.61450672119976,0.85422955527427,0.211931901159562,1.20036438433761,1.13357782162283,2.57640540045629,0.930584281657949,0.675105328965065,1.36411807225678,2.01947019395292,0.736399189138395,0.484938170456436,1.77504796258307,1.0075209822764,0.508681776931463,0,0.272746120590835,0,0,0,0,0.10366105501537,0,0,1.56449532329816,3.21620469096443,1.38134921352481,0.928735856063958,0.721879481669586,0,0,0,0,0.217879444092406,0,0.134831308160164,0,0,0,2.80483547606892,0.4115740113314,0,0,0,0,0,0,2.40194934417936,0,0,0.201057944823262,0.0925884451585296,2.6064664424826,0,8.6598805215164,2.20267769452646,4.22671299248958,0,0,0,0,0.858486162094873,0.246217006087397,0,0,0,0.335964256397719,0.141775097242386,0.0895585227028483,0,0.383382679165211,1.97065295158377,0.264145302039678,6.42717158176393,22.6268326864629,5.30218220390796,0.317489471460845,0,0,0,0.205654985406647,0,0,1.45770409648969,0.87192013766656,1.39342743059805,0.517086863031111,0,2.535908257668,0.531876233169741,0,1.02882949704857,0,0.799266537048298,0.428933980974443,0.542621605391443,2.46972101034231,1.95441710576241,0.355391948742546,3.95975936466715,0.301439377059586,0,0,0,0,0,0,0,2.85273810081437,0.144781306667579,0.821905290201534,1.79060963239896,1.2329365839288,13.3980916937311,6.03757209606648,3.85029108839245,0.254094624222463,0,0,0,0,7.49007023947182,23.932916736322,18.2342825911856,1.10422342547226,3.00102312635806,0.542530047399471,0.415941723061614,1.24900292158013,0.788512075169673,0.468565659970853,0.300946099727719,2.27407504055985,0,0,1.10621501125022,1.21637060255316,0.979005787313703,1.71571711905428,7.44364894042395,4.09856981555372,9.81893531791688,0,0,1.81434175997808,0.496215615637554,2.14846762603287,0.841980283299221,0.128139149255701,1.53512174720011,0.321707842287215,0,2.00472601943452,0.177561725313127,1.14978018419333,1.55776328755086,0.464841513839837,0,1.40354529212299,0.0920809889358963,1.26295892981067,0.910455840033585,0.786746489756545,0.902399225814824,0.616122696835318,3.13739907670742,1.46139224653261,0.844413031143006,0,0,2.59099099322567,0,3.79325012561394,2.00675909541941,1.78413391131527,0.831076008928724,5.82074362277664,0.438519753291869,0.261435451024901,0,0,0,0.618246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| ||
|short_description=p4@RUNX2 | |short_description=p4@RUNX2 | ||
}} | }} |
Latest revision as of 01:26, 19 September 2015
Short description: | p4@RUNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RUNX2_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | 386bp_to_ENST00000359524, ENST00000371432, NM_004348, uc003oxt.2_5end |
EntrezGene: | RUNX2 |
HGNC: | 10472 |
UniProt: | Q13950F8W8U5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.39e-11 | 177 |
T cell | 5.49e-11 | 25 |
pro-T cell | 5.49e-11 | 25 |
leukocyte | 9.38e-11 | 136 |
mature alpha-beta T cell | 1.31e-10 | 18 |
alpha-beta T cell | 1.31e-10 | 18 |
immature T cell | 1.31e-10 | 18 |
mature T cell | 1.31e-10 | 18 |
immature alpha-beta T cell | 1.31e-10 | 18 |
hematopoietic stem cell | 3.66e-10 | 168 |
CD8-positive, alpha-beta T cell | 9.12e-09 | 11 |
hematopoietic oligopotent progenitor cell | 4.23e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.23e-08 | 161 |
granulocyte | 1.75e-07 | 8 |
motile cell | 2.32e-07 | 386 |
mesenchymal cell | 2.95e-07 | 354 |
connective tissue cell | 3.01e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
blood | 2.83e-10 | 15 |
haemolymphatic fluid | 2.83e-10 | 15 |
organism substance | 2.83e-10 | 15 |
hematopoietic system | 1.15e-08 | 98 |
blood island | 1.15e-08 | 98 |
hemolymphoid system | 3.22e-08 | 108 |
connective tissue | 2.45e-07 | 371 |