FFCP PHASE1:Hg19::chr6:42016311..42016342,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=896 | |EntrezGene=896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1585 | |HGNC=1585 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=71bp_to_ENST00000505672_5end | |association_with_transcript=71bp_to_ENST00000505672_5end | ||
|cluster_id=chr6:42016311..42016342,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_6_at_CCND3_5end | |description=CAGE_peak_6_at_CCND3_5end | ||
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|ontology_enrichment_celltype=CL:0000791!7.52e-14!18;CL:0000789!7.52e-14!18;CL:0002420!7.52e-14!18;CL:0002419!7.52e-14!18;CL:0000790!7.52e-14!18;CL:0000625!8.08e-10!11;CL:0000838!1.84e-09!52;CL:0000542!5.16e-09!53;CL:0000051!5.16e-09!53;CL:0000084!1.02e-08!25;CL:0000827!1.02e-08!25 | |ontology_enrichment_celltype=CL:0000791!7.52e-14!18;CL:0000789!7.52e-14!18;CL:0002420!7.52e-14!18;CL:0002419!7.52e-14!18;CL:0000790!7.52e-14!18;CL:0000625!8.08e-10!11;CL:0000838!1.84e-09!52;CL:0000542!5.16e-09!53;CL:0000051!5.16e-09!53;CL:0000084!1.02e-08!25;CL:0000827!1.02e-08!25 | ||
|ontology_enrichment_celltype_v019=CL:0000791;7.36e-24;18!CL:0000789;7.36e-24;18!CL:0002419;7.36e-24;18!CL:0000084;1.21e-17;25!CL:0000625;1.65e-17;11!CL:0000542;3.38e-12;53!CL:0000624;9.79e-10;6!CL:0000236;6.95e-08;13 | |ontology_enrichment_celltype_v019=CL:0000791;7.36e-24;18!CL:0000789;7.36e-24;18!CL:0002419;7.36e-24;18!CL:0000084;1.21e-17;25!CL:0000625;1.65e-17;11!CL:0000542;3.38e-12;53!CL:0000624;9.79e-10;6!CL:0000236;6.95e-08;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.63e-24,18;CL:0000789,7.63e-24,18;CL:0002420,7.63e-24,18;CL:0002419,7.63e-24,18;CL:0000790,7.63e-24,18;CL:0000838,8.82e-20,52;CL:0000542,3.24e-19,53;CL:0000051,3.24e-19,53;CL:0000084,1.31e-17,25;CL:0000827,1.31e-17,25;CL:0000625,1.70e-17,11;CL:0000624,9.88e-10,6;CL:0000738,6.29e-09,136;CL:0002087,6.79e-08,115;CL:0000236,3.11e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;7.36e-24;18!CL:0000051;3.38e-12;53 | |ontology_enrichment_development_v019=CL:0000790;7.36e-24;18!CL:0000051;3.38e-12;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.63e-17!115;UBERON:0000153!1.78e-08!129;UBERON:0007811!1.78e-08!129;UBERON:0002346!5.96e-07!90;UBERON:0000033!8.46e-07!123 | |ontology_enrichment_uberon=UBERON:0007023!3.63e-17!115;UBERON:0000153!1.78e-08!129;UBERON:0007811!1.78e-08!129;UBERON:0002346!5.96e-07!90;UBERON:0000033!8.46e-07!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.16e-10;15!UBERON:0000179;7.16e-10;15!UBERON:0000463;7.16e-10;15!UBERON:0002390;2.59e-09;32!UBERON:0002193;2.53e-07;42 | |ontology_enrichment_uberon_v019=UBERON:0000178;7.16e-10;15!UBERON:0000179;7.16e-10;15!UBERON:0000463;7.16e-10;15!UBERON:0002390;2.59e-09;32!UBERON:0002193;2.53e-07;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.82e-10,15;UBERON:0000179,5.82e-10,15;UBERON:0000463,5.82e-10,15;UBERON:0003408,6.18e-07,10 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.436882744260345,0.263766978228454,1.11389717664042,0.994192127183747,0,0,0,0,1.35433163884467,1.83600622119828,0.940364164434263,0.286235987131057,0.821246550437305,0.125542639594803,0.0764134057479513,0,0,0.786728553697808,1.53531759238885,1.08371286321253,0,0,0.369754010166788,0.697204805222715,0.142169232487422,0,1.10799081706375,1.00272223735071,1.95309783644267,0.447830948479849,2.26725566213286,0.77272670290256,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0.224723484445085,0,0.320929027076094,0,0,0,0,0,0,0,0.75374599577023,0.521482918420201,0,0,0.368277635987565,0,0.211255286311942,0,0,0.22465726229299,0,0.16072558669708,0,0,0,3.51992488922645,4.91524750135918,2.66852776159066,3.41384178053206,2.40237592221607,1.14950487990897,0,0.954053754535364,5.69212969109448,1.76171156811282,6.49864487812889,1.32171328579026,2.80254281490768,0.263384084775077,2.55722701147983,3.14408610199332,6.5792479679843,0.668745981562712,9.45174573237412,8.5220605032252,5.84480185223734,0.334231370655521,4.12448270464772,3.76607620792156,0.812411591295047,0.25618263945135,0.130059347559878,1.80881695064044,1.38175008892924,1.73881851441031,12.4560713056131,8.82884732696053,4.18142095219907,0.793165398882963,4.98186641682498,4.46715679127419,2.02415753615602,7.64556994377832,9.76625180784628,4.75226022224187,7.07703059665532,6.2713439465665,6.24653632761729,3.78843603270427,4.10563998460523,6.65302252641617,5.88368430723716,8.11016661743674,0,0,0.511450247374121,0,0,0,0,0.486634870302636,2.45790524626576,1.55210578223795,1.93236528524877,1.24430121722827,0.728590576585084,0,0,0,0.132957960518865,0,0,0.371457501329565,0.198762407366705,0,0,0,0,0,0.417989933073621,0.258416759169329,0,0,0.805658634218294,0,0.732186172644509,0,0.81014194788176,0.0892997282840798,0,0,0,0,0,1.31780417436063,0,0.436094052142534,0,0,0,0,0.354668382198357,0,0,0,0,1.21239604862719,0.817309515567294,4.23800797405808,0.576175924479999,1.17160715916898,0,0,0,0,0.161872944368132,0.140450806702248,0.61246251376468,0.859840221182376,0.516628905878827,0,0,0.910161361938026,2.15585442544872,0.168336113954066,0.625592599359821,0,0,0,0,0.680593098960126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,2.94017422771084,0,0,0,1.7658523976586,0,0.343135620597051,0.109750285408626,0,0,0.462942225792648,5.86454949558584,1.03993478527958,0,0.115930404975077,1.05667824812239,0.144366447761074,0,0.570762456703795,0,0,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0,0,0.088048434013226,1.65862492432618,0.432359860250884,1.13618190083742,0,0.381988425558278,0,0,0,0,0,0.672786506072164,0.87192013766656,0.4400297149257,0,3.57656445851882,0,0.26593811658487,0,1.28603687131071,1.41849132023278,2.66422179016099,2.28764789853036,1.08524321078289,0,0,1.06617584622764,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0.336255431980582,6.10795356625974,4.52817907204986,4.62034930607094,0.254094624222463,0,0,0.502548796003046,1.27587750330633,0.749007023947182,14.9580729602012,0.828831026872071,1.71768088406796,7.00238729483548,2.17012018959788,0,0,0.157702415033935,0,1.20378439891088,4.5481500811197,2.0694614258501,0,0.184369168541703,0,7.44044398358414,12.3531632571908,5.37596867919507,3.45142721309787,4.802740101155,0,0,0.604780586659361,0,0.153461973288062,0,0.128139149255701,0,0,1.48418066444991,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0,0,0,0,0,0.105551628892876,0,0,0.863663664408557,1.54227252690289,0.812839312631559,0,0,0,0,0,0,0,0,0.325378394664303,0.9273691048295,0,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0.429680979473094,0.290033387828457,0.255679882248303,0.178064071293475,0,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0.372158369359667,0.632758849437452,0.571890581771475,0,1.71175595213568,0,0,0,0.274537029736055,0.235624804691373,0,0,0,1.46290121726877,0,0,0,0,0,0,0,0,0.578775534266688,1.31178950409327,0,0,0,0.143411352204052,0.392996164052485,0,0,0,0,1.89736586882858,5.94889024416471,0.288666338176536,0,0,0.847294206991012,0,0,0,0.689170200620878,2.02979043692868,3.0585488285695,1.70894156152249,2.38231775457789,3.70226045777575,0,1.62009431171434,3.17250070517708,0.106824071127473,0,0,0,0,4.19736875755643,0,0.199579371432817,0,0.635020748171649,0,0,0,0,0,0.846458889008016,0,0,0.425846237690326,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0.296964680832639,0.921482106297696,0.994147647766298,0.140669416410513,0.111308705022906,0,0.844501632511974,0.796991953004279,1.10513566212459,0,0.20453736500431,0,0,0,0,0,0.394573622547734,2.3948309234694,0,3.87733098438087,1.29875337426592,3.99227596002388,0,0,1.44999915086959,0.1137934482855,0.254253650292766,0,0,0,0,0,0.60298219312704,0,0.442317039724898,0.886642856860642,1.09692698576986,0,0,0.769502585037971,0,0,0,0,0.638002319463839,0,0,0,0.156980256395025,0,0,0,0,0.189753732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| ||
|short_description=p6@CCND3 | |short_description=p6@CCND3 | ||
}} | }} |
Latest revision as of 19:32, 18 September 2015
Short description: | p6@CCND3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CCND3_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 71bp_to_ENST00000505672_5end |
EntrezGene: | CCND3 |
HGNC: | 1585 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 7.63e-24 | 18 |
alpha-beta T cell | 7.63e-24 | 18 |
immature T cell | 7.63e-24 | 18 |
mature T cell | 7.63e-24 | 18 |
immature alpha-beta T cell | 7.63e-24 | 18 |
lymphoid lineage restricted progenitor cell | 8.82e-20 | 52 |
lymphocyte | 3.24e-19 | 53 |
common lymphoid progenitor | 3.24e-19 | 53 |
T cell | 1.31e-17 | 25 |
pro-T cell | 1.31e-17 | 25 |
CD8-positive, alpha-beta T cell | 1.70e-17 | 11 |
CD4-positive, alpha-beta T cell | 9.88e-10 | 6 |
leukocyte | 6.29e-09 | 136 |
nongranular leukocyte | 6.79e-08 | 115 |
B cell | 3.11e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
blood | 5.82e-10 | 15 |
haemolymphatic fluid | 5.82e-10 | 15 |
organism substance | 5.82e-10 | 15 |
gland of gut | 6.18e-07 | 10 |