FFCP PHASE1:Hg19::chr5:82834000..82834017,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:82834000..82834017,+ | |||
|coexpression_cluster_id=C456 | |coexpression_cluster_id=C456 | ||
|description=CAGE_peak_at_chr5:82834000..82834017,+ | |description=CAGE_peak_at_chr5:82834000..82834017,+ | ||
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|ontology_enrichment_celltype=CL:0002057!3.21e-20!42;CL:0000860!1.10e-17!45;CL:0002194!4.24e-10!63;CL:0000576!4.24e-10!63;CL:0000040!4.24e-10!63;CL:0000559!4.24e-10!63;CL:0002009!2.49e-09!65;CL:0000048!4.57e-09!430;CL:0000034!9.10e-09!444;CL:0000723!2.85e-08!436;CL:0000055!4.41e-08!180;CL:0000839!5.01e-08!70;CL:0000557!1.02e-07!71;CL:0000057!1.14e-07!75;CL:0000766!2.71e-07!76;CL:0002334!3.34e-07!12 | |ontology_enrichment_celltype=CL:0002057!3.21e-20!42;CL:0000860!1.10e-17!45;CL:0002194!4.24e-10!63;CL:0000576!4.24e-10!63;CL:0000040!4.24e-10!63;CL:0000559!4.24e-10!63;CL:0002009!2.49e-09!65;CL:0000048!4.57e-09!430;CL:0000034!9.10e-09!444;CL:0000723!2.85e-08!436;CL:0000055!4.41e-08!180;CL:0000839!5.01e-08!70;CL:0000557!1.02e-07!71;CL:0000057!1.14e-07!75;CL:0000766!2.71e-07!76;CL:0002334!3.34e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.31e-24;33!CL:0002057;9.31e-24;33!CL:0000473;9.49e-17;39!CL:0000234;9.49e-17;39!CL:0000576;1.67e-13;48!CL:0002334;7.91e-13;12!CL:1000306;1.06e-07;4!CL:0002547;1.06e-07;4 | |ontology_enrichment_celltype_v019=CL:0000860;9.31e-24;33!CL:0002057;9.31e-24;33!CL:0000473;9.49e-17;39!CL:0000234;9.49e-17;39!CL:0000576;1.67e-13;48!CL:0002334;7.91e-13;12!CL:1000306;1.06e-07;4!CL:0002547;1.06e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.71e-25,42;CL:0002057,3.71e-25,42;CL:0000473,6.85e-21,48;CL:0000234,6.85e-21,48;CL:0002194,5.44e-15,59;CL:0000576,5.44e-15,59;CL:0000040,5.44e-15,59;CL:0000559,5.44e-15,59;CL:0002009,3.07e-14,61;CL:0002334,1.02e-12,12;CL:0000839,1.44e-12,66;CL:0000557,2.90e-12,67;CL:0000048,3.54e-12,427;CL:0000134,6.41e-12,354;CL:0000723,1.12e-11,433;CL:0002320,2.78e-11,361;CL:0000034,4.91e-11,441;CL:0000766,6.96e-11,72;CL:0000219,1.62e-09,386;CL:0000057,7.36e-09,76;CL:1000306,9.93e-08,4;CL:0002547,9.93e-08,4 | |||
|ontology_enrichment_development_v019=CL:0002057;8.13e-19;42 | |ontology_enrichment_development_v019=CL:0002057;8.13e-19;42 | ||
|ontology_enrichment_disease=DOID:2394!1.96e-08!14 | |ontology_enrichment_disease=DOID:2394!1.96e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;7.33e-11;14 | |ontology_enrichment_disease_v019=DOID:2394;7.33e-11;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,1.12e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!1.44e-12!167;UBERON:0000468!4.97e-11!659;UBERON:0003081!3.88e-09!216;UBERON:0000926!9.27e-09!448;UBERON:0004120!9.27e-09!448;UBERON:0006603!9.27e-09!448;UBERON:0000922!1.74e-07!612;UBERON:0000467!1.81e-07!625;UBERON:0000480!2.38e-07!626;UBERON:0002390!6.20e-07!102;UBERON:0003061!6.20e-07!102 | |ontology_enrichment_uberon=UBERON:0002204!1.44e-12!167;UBERON:0000468!4.97e-11!659;UBERON:0003081!3.88e-09!216;UBERON:0000926!9.27e-09!448;UBERON:0004120!9.27e-09!448;UBERON:0006603!9.27e-09!448;UBERON:0000922!1.74e-07!612;UBERON:0000467!1.81e-07!625;UBERON:0000480!2.38e-07!626;UBERON:0002390!6.20e-07!102;UBERON:0003061!6.20e-07!102 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;3.54e-11;9!UBERON:0000042;3.54e-11;9!UBERON:0003688;1.61e-10;6!UBERON:0002358;1.61e-10;6!UBERON:0003684;1.61e-10;6!UBERON:0001178;1.61e-10;6!UBERON:0004797;1.06e-07;4!UBERON:0000415;1.06e-07;4!UBERON:0007240;1.06e-07;4!UBERON:0005742;1.06e-07;4!UBERON:0005734;1.06e-07;4!UBERON:0004664;1.06e-07;4!UBERON:0004663;1.06e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0004457;3.54e-11;9!UBERON:0000042;3.54e-11;9!UBERON:0003688;1.61e-10;6!UBERON:0002358;1.61e-10;6!UBERON:0003684;1.61e-10;6!UBERON:0001178;1.61e-10;6!UBERON:0004797;1.06e-07;4!UBERON:0000415;1.06e-07;4!UBERON:0007240;1.06e-07;4!UBERON:0005742;1.06e-07;4!UBERON:0005734;1.06e-07;4!UBERON:0004664;1.06e-07;4!UBERON:0004663;1.06e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.47e-14,315;UBERON:0004120,1.47e-14,315;UBERON:0006603,1.47e-14,315;UBERON:0002384,1.43e-11,371;UBERON:0003081,2.00e-10,203;UBERON:0003688,2.29e-10,6;UBERON:0002358,2.29e-10,6;UBERON:0003684,2.29e-10,6;UBERON:0001178,2.29e-10,6;UBERON:0002371,6.42e-10,76;UBERON:0002390,7.84e-09,98;UBERON:0003061,7.84e-09,98;UBERON:0001474,1.16e-08,82;UBERON:0004457,8.74e-08,12;UBERON:0000042,8.74e-08,12;UBERON:0002204,9.44e-08,167;UBERON:0000415,9.93e-08,4;UBERON:0007240,9.93e-08,4;UBERON:0005742,9.93e-08,4;UBERON:0005734,9.93e-08,4;UBERON:0004664,9.93e-08,4;UBERON:0004663,9.93e-08,4;UBERON:0002193,2.76e-07,108;UBERON:0004765,2.83e-07,90;UBERON:0001434,4.84e-07,100;UBERON:0002405,8.01e-07,93 | |||
|phase1_expression=1.99846217197612,3.8538094300377,2.11431606143957,2.00146596706261,2.23480547213644,3.48935409640147,0,0,1.56711376919903,0,0,0,0,0.123766352960047,0,1.34465029290355,1.20538905604795,1.46062018077475,1.95173119516203,0.123121058076788,0,0,0,1.09499540058307,0.251085279189606,0,0,0,0,0.767658796194425,0.309632246632152,0,0,0,0,0,0,2.21598163412751,4.21143339687298,2.38711957787437,0,0,0,4.21654892460738,0.377875943688809,0.485168122375632,4.41615170120801,0.411167888021826,1.85823822537062,4.89077066947656,2.0492856522328,1.6553756092201,1.72372840368309,3.87290810150296,1.35426486594342,8.094420600332,2.45615535052061,0.674170453335254,7.03992952453076,0.641858054152187,1.27867425159808,1.64925650093358,1.79517291859469,0,10.1573233520004,1.13477044938228,1.24564449799115,6.28121663141858,4.69334626578181,1.3031330682307,3.02699751316684,0.736555271975129,0.949387162322653,0.845021145247767,0.425208599930087,0.209658645508376,1.57260083605093,1.95229960693958,2.4108838004562,0,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.12786256184353,1.44575660953827,0.50133791063589,0.724232594804119,0,0,0.0945348171640679,0.443458794925128,1.31752178539689,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,1.64619665163954,3.44263870114369,8.3182620017156,2.12801029319014,1.12135520028461,0,2.71334303258876,0,1.34710672069688,0.163461903113459,0,0.576175924479999,0,0.312160076830321,0,0.298897361103602,0,0.161872944368132,0.140450806702248,0,0,0.206651562351531,0,2.22540236350701,0,0,0.168336113954066,0.250237039743928,0,0,0.612975591598039,0.45071417671979,0.226864366320042,1.4351170855109,0.427114777637135,0,0.300091096084402,0.515262646192195,1.28820270022815,0,1.68776332241266,0.68205903612839,0.504867548488229,0.276149695926898,0.161646056818812,1.77504796258307,0.302256294682921,0.339121184620975,0,0,0,0.487894824518382,0.530119073285941,0.348581828608555,0.725627385107593,0.504641701751257,0.36497735907583,0,4.5026865673502,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,1.44331342025273,0,1.87853910777315,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0.16798212819886,0.141775097242386,0.268675568108545,0.290633938513962,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0.646358578788889,0,0,0.797814349754612,1.04007436911366,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0.599837947092342,0,0,0,0.239624855491583,0,0,0.289562613335158,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0.637938751653163,0,0,0,0.36807447515742,0,0.271265023699736,1.03985430765404,2.67643483195743,0.157702415033935,0.585707074963566,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0.620304078368662,1.2942852049117,0.853820462427555,0,0,0,2.97729369382532,2.455391572609,5.61320188866147,2.43464383585832,1.53512174720011,6.4341568457443,0,1.07946785661859,1.59805552781814,0.246381468041427,5.19254429183621,1.04589340613963,0,1.40354529212299,0,0.459257792658427,0.364182336013434,0,0,0.231046011313244,0,2.92278449306521,0.422206515571503,0,0,0.215915916102139,0,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,3.21367859688319,0.290012154876366,0.770243085573222,0.614014698904518,0.413509717453592,0.214840489736547,1.0151168573996,0.426133137080504,0.890320356467374,0.165284915360978,0,0.382838137483752,0.10115778085555,0,3.46293581513704,0,0.616067160352178,0.532306030317022,0,0.9266210955196,0.286249773483982,0,0.316379424718726,0,0,0,1.27281299170375,0.78494864019923,0.359744915166629,1.09814811894422,0.942499218765491,0,0,0.421258456238981,0,0.731140468893853,0,0.136499911407986,1.27264888758341,2.26016233240486,0,0.66343897524122,0.876901770507525,0,0,0.608731130888112,0,0.281695602532241,0.286822704408103,0.0982490410131212,0,0,1.26664581178598,1.31717957183961,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0,0,0,3.82318603571188,0.569647187174163,0.714695326373367,0.822724546172388,1.29694662238543,0.540031437238115,1.58625035258854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75809815126273,0,0,0,0,0,0,0,0.140669416410513,0.333926115068718,0.824019371133798,0,1.39473591775749,0,0,0,0,1.24415835064723,0.0898683511473268,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0.694499979733169,0,0.241192877250816,0,0,0,0,0,0,0.461701551022782,0.569710279235006,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0.979396848954886,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0.134802265961354,0.802577647298789,0.234264445725339,0,0,0,0.394584402849391,0,0,0.947798694427319,0,0,0,0,0,0,0,0,0.347119476670262,0,0,0,0,0,0,0,0.0969890164884194,0,0.451961481561065,0,0,0,0,0,0,0.19980960958213,0,0,0,0.288109595976299,0,0,0,0.104602846312333,0,0,0,0.547621515567972,0,1.28929632425987,0.262887354279314,1.95497680890578,0.458320848023367,0,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| ||
|short_description=p@chr5:82834000..82834017,+ | |short_description=p@chr5:82834000..82834017,+ | ||
}} | }} |
Latest revision as of 16:56, 30 July 2015
Short description: | p@chr5:82834000..82834017, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:82834000..82834017, + |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.71e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.71e-25 | 42 |
defensive cell | 6.85e-21 | 48 |
phagocyte | 6.85e-21 | 48 |
monopoietic cell | 5.44e-15 | 59 |
monocyte | 5.44e-15 | 59 |
monoblast | 5.44e-15 | 59 |
promonocyte | 5.44e-15 | 59 |
macrophage dendritic cell progenitor | 3.07e-14 | 61 |
preadipocyte | 1.02e-12 | 12 |
myeloid lineage restricted progenitor cell | 1.44e-12 | 66 |
granulocyte monocyte progenitor cell | 2.90e-12 | 67 |
multi fate stem cell | 3.54e-12 | 427 |
mesenchymal cell | 6.41e-12 | 354 |
somatic stem cell | 1.12e-11 | 433 |
connective tissue cell | 2.78e-11 | 361 |
stem cell | 4.91e-11 | 441 |
myeloid leukocyte | 6.96e-11 | 72 |
motile cell | 1.62e-09 | 386 |
fibroblast | 7.36e-09 | 76 |
fibroblast of tunica adventitia of artery | 9.93e-08 | 4 |
fibroblast of the aortic adventitia | 9.93e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.47e-14 | 315 |
mesoderm-derived structure | 1.47e-14 | 315 |
presumptive mesoderm | 1.47e-14 | 315 |
connective tissue | 1.43e-11 | 371 |
lateral plate mesoderm | 2.00e-10 | 203 |
omentum | 2.29e-10 | 6 |
peritoneum | 2.29e-10 | 6 |
abdominal cavity | 2.29e-10 | 6 |
visceral peritoneum | 2.29e-10 | 6 |
bone marrow | 6.42e-10 | 76 |
hematopoietic system | 7.84e-09 | 98 |
blood island | 7.84e-09 | 98 |
bone element | 1.16e-08 | 82 |
cavity lining | 8.74e-08 | 12 |
serous membrane | 8.74e-08 | 12 |
musculoskeletal system | 9.44e-08 | 167 |
artery wall | 9.93e-08 | 4 |
tunica adventitia of artery | 9.93e-08 | 4 |
adventitia | 9.93e-08 | 4 |
tunica adventitia of blood vessel | 9.93e-08 | 4 |
aorta tunica adventitia | 9.93e-08 | 4 |
aorta wall | 9.93e-08 | 4 |
hemolymphoid system | 2.76e-07 | 108 |
skeletal element | 2.83e-07 | 90 |
skeletal system | 4.84e-07 | 100 |
immune system | 8.01e-07 | 93 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.12e-10 | 14 |