FFCP PHASE1:Hg19::chr17:41712493..41712497,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:41712493..41712497,+ | |||
|description=CAGE_peak_at_chr17:41712493..41712497,+ | |description=CAGE_peak_at_chr17:41712493..41712497,+ | ||
|id=chr17:41712493..41712497,+ | |id=chr17:41712493..41712497,+ | ||
|ontology_enrichment_celltype=CL:0002076!2.15e-15!43;CL:0000223!9.66e-14!59;CL:0002368!3.88e-11!13;CL:0002202!1.08e-09!9;CL:0002632!1.08e-09!9;CL:0002251!1.36e-09!21;CL:0002328!1.08e-08!3;CL:0000220!3.34e-08!246;CL:0002321!4.75e-08!248;CL:0000068!5.32e-08!3;CL:0000069!5.32e-08!3;CL:0000307!5.32e-08!3;CL:0000377!5.32e-08!3;CL:0000066!6.23e-07!254;CL:0000076!6.99e-07!62 | |ontology_enrichment_celltype=CL:0002076!2.15e-15!43;CL:0000223!9.66e-14!59;CL:0002368!3.88e-11!13;CL:0002202!1.08e-09!9;CL:0002632!1.08e-09!9;CL:0002251!1.36e-09!21;CL:0002328!1.08e-08!3;CL:0000220!3.34e-08!246;CL:0002321!4.75e-08!248;CL:0000068!5.32e-08!3;CL:0000069!5.32e-08!3;CL:0000307!5.32e-08!3;CL:0000377!5.32e-08!3;CL:0000066!6.23e-07!254;CL:0000076!6.99e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0002368;9.18e-32;13!CL:0002202;9.19e-30;9!CL:0002632;9.19e-30;9!CL:0000307;2.78e-23;3!CL:0002328;6.80e-23;3!CL:0002076;7.98e-10;42 | |ontology_enrichment_celltype_v019=CL:0002368;9.18e-32;13!CL:0002202;9.19e-30;9!CL:0002632;9.19e-30;9!CL:0000307;2.78e-23;3!CL:0002328;6.80e-23;3!CL:0002076;7.98e-10;42 | ||
|ontology_enrichment_celltype_v019_2=CL:0002368,8.08e-32,13;CL:0002202,8.54e-30,9;CL:0002632,8.54e-30,9;CL:0000068,3.29e-23,3;CL:0000069,3.29e-23,3;CL:0000307,3.29e-23,3;CL:0000377,3.29e-23,3;CL:0002328,5.15e-23,3;CL:0002076,4.92e-14,42;CL:0000223,4.11e-10,58;CL:0000066,5.39e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000377;2.78e-23;3!CL:0000223;5.35e-07;58 | |ontology_enrichment_development_v019=CL:0000377;2.78e-23;3!CL:0000223;5.35e-07;58 | ||
|ontology_enrichment_disease=DOID:1749!2.66e-15!14 | |ontology_enrichment_disease=DOID:1749!2.66e-15!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.68e-19;14 | |ontology_enrichment_disease_v019=DOID:1749;2.68e-19;14 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,2.68e-19,14 | |||
|ontology_enrichment_uberon=UBERON:0003729!2.19e-12!5;UBERON:0003343!3.71e-10!4;UBERON:0004785!3.71e-10!4;UBERON:0004815!1.08e-08!3;UBERON:0002031!1.08e-08!3;UBERON:0007196!1.27e-07!14;UBERON:0001558!1.27e-07!14;UBERON:0000344!9.35e-07!12 | |ontology_enrichment_uberon=UBERON:0003729!2.19e-12!5;UBERON:0003343!3.71e-10!4;UBERON:0004785!3.71e-10!4;UBERON:0004815!1.08e-08!3;UBERON:0002031!1.08e-08!3;UBERON:0007196!1.27e-07!14;UBERON:0001558!1.27e-07!14;UBERON:0000344!9.35e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;6.80e-23;3!UBERON:0002031;6.80e-23;3!UBERON:0007196;4.86e-18;15!UBERON:0001558;4.86e-18;15!UBERON:0002185;3.72e-14;5!UBERON:0003126;1.50e-10;7!UBERON:0001005;1.50e-10;7!UBERON:0000485;2.19e-10;7!UBERON:0000065;4.07e-09;44!UBERON:0005178;1.85e-08;34!UBERON:0002224;1.85e-08;34!UBERON:0005181;2.26e-07;35!UBERON:0000072;4.00e-07;37 | |ontology_enrichment_uberon_v019=UBERON:0004815;6.80e-23;3!UBERON:0002031;6.80e-23;3!UBERON:0007196;4.86e-18;15!UBERON:0001558;4.86e-18;15!UBERON:0002185;3.72e-14;5!UBERON:0003126;1.50e-10;7!UBERON:0001005;1.50e-10;7!UBERON:0000485;2.19e-10;7!UBERON:0000065;4.07e-09;44!UBERON:0005178;1.85e-08;34!UBERON:0002224;1.85e-08;34!UBERON:0005181;2.26e-07;35!UBERON:0000072;4.00e-07;37 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,5.15e-23,3;UBERON:0002031,5.15e-23,3;UBERON:0007196,4.65e-18,15;UBERON:0001558,4.65e-18,15;UBERON:0002185,3.15e-14,5;UBERON:0003126,1.61e-10,7;UBERON:0001005,1.61e-10,7;UBERON:0000485,2.55e-08,9;UBERON:0005178,3.83e-08,34;UBERON:0002224,3.83e-08,34;UBERON:0005181,6.44e-08,35;UBERON:0001004,7.12e-08,74;UBERON:0000065,1.01e-07,54;UBERON:0008947,2.60e-07,38;UBERON:0003258,2.60e-07,38 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0.919421224478927,1.8072355126695,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0.486634870302636,0,0.221729397462564,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.818238361772504,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,1.1240175325762,0.804231779293047,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70161193135412,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616838775210622,0,0.246381468041427,0.519254429183621,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0.154048617114644,0.15350367472613,0,0,0,0,0,0,0,1.78657797492418,0.2023155617111,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0.0962221127255121,2.01090682660736,3.26672954583968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95862965542299,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0.166211681900156,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0.164831716762333,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,3.83004754662109,0,0,0,0,0,0,0,0,0,0,0,0,3.24949060701477,0,0,0,0,0,0.298509605773748,0,0.554805861502613,0,0,0,0,0,0.15543720058278,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0.363697318405119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.943757786781923,2.01771458373847,0.231051332300676,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0.348724276104376,0,0,0.414432328326074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,1.05868461514708,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0.506794004045748,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.325613074443898,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0.919421224478927,1.8072355126695,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0.486634870302636,0,0.221729397462564,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0.818238361772504,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,1.1240175325762,0.804231779293047,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70161193135412,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.616838775210622,0,0.246381468041427,0.519254429183621,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0.154048617114644,0.15350367472613,0,0,0,0,0,0,0,1.78657797492418,0.2023155617111,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0.0962221127255121,2.01090682660736,3.26672954583968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.95862965542299,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0,0.166211681900156,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0.164831716762333,0,0,0,0,0,0.160753148465019,0.137539436597234,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,3.83004754662109,0,0,0,0,0,0,0,0,0,0,0,0,3.24949060701477,0,0,0,0,0,0.298509605773748,0,0.554805861502613,0,0,0,0,0,0.15543720058278,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0.363697318405119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0.943757786781923,2.01771458373847,0.231051332300676,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0.348724276104376,0,0,0.414432328326074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,1.05868461514708,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0.506794004045748,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0.0717222053926763,0,0.325613074443898,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:41712493..41712497,+ | |short_description=p@chr17:41712493..41712497,+ | ||
}} | }} |
Latest revision as of 17:15, 25 July 2015
Short description: | p@chr17:41712493..41712497, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:41712493..41712497, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 8.08e-32 | 13 |
epithelial cell of tracheobronchial tree | 8.54e-30 | 9 |
epithelial cell of lower respiratory tract | 8.54e-30 | 9 |
duct epithelial cell | 3.29e-23 | 3 |
branched duct epithelial cell | 3.29e-23 | 3 |
tracheal epithelial cell | 3.29e-23 | 3 |
tracheoblast | 3.29e-23 | 3 |
bronchial epithelial cell | 5.15e-23 | 3 |
endo-epithelial cell | 4.92e-14 | 42 |
endodermal cell | 4.11e-10 | 58 |
epithelial cell | 5.39e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 5.15e-23 | 3 |
epithelium of bronchus | 5.15e-23 | 3 |
tracheobronchial tree | 4.65e-18 | 15 |
lower respiratory tract | 4.65e-18 | 15 |
bronchus | 3.15e-14 | 5 |
trachea | 1.61e-10 | 7 |
respiratory airway | 1.61e-10 | 7 |
simple columnar epithelium | 2.55e-08 | 9 |
thoracic cavity element | 3.83e-08 | 34 |
thoracic cavity | 3.83e-08 | 34 |
thoracic segment organ | 6.44e-08 | 35 |
respiratory system | 7.12e-08 | 74 |
respiratory tract | 1.01e-07 | 54 |
respiratory primordium | 2.60e-07 | 38 |
endoderm of foregut | 2.60e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.68e-19 | 14 |